Array 1 2214-3381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDTY010000080.1 Pseudomonas aeruginosa strain 8-24 GKFMLNIA_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2214 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 2274 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 2334 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 2394 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 2454 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 2514 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 2574 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 2634 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 2694 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 2754 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 2814 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 2874 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 2934 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 2994 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 3054 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 3114 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 3174 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 3234 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 3294 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 3354 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 14034-11906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDTY010000080.1 Pseudomonas aeruginosa strain 8-24 GKFMLNIA_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14033 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 13973 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 13913 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 13853 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 13793 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 13733 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 13673 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 13613 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 13553 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 13493 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 13433 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 13373 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 13313 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 13253 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 13193 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 13133 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 13073 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 13013 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 12953 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 12893 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 12833 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 12773 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 12713 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 12653 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 12593 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 12533 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 12473 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 12413 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 12353 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 12293 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 12233 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 12173 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 12113 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 12053 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 11993 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 11933 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //