Array 1 45216-45372 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEF01000013.1 Ruminococcus sp. AF33-11BH AF33-11BH.Scaf13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 45216 24 100.0 41 ........................ GGGATTTCTTTAACCGTTTCCATAAGTGCATCAATCTTTAC 45281 24 100.0 44 ........................ TCGTAGTCTTTCGCCGCCAGAGATCGTGGAGAATACAGCTTTAC 45349 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 3 24 100.0 43 ATTCCAATATGGTTCTACTTTAAT # Left flank : ATTTTATTGATAAACAGGAACGTCGGAATCTGGTATCTTGCCAGAAGTCTCCATAAGGTCATAGTATGCCCCTGCACACCATCCGCTCCATTTATCACAAGAATCGCATAATCCAGAACCTGCAGTGTCCTCTCCATTTCCGCCGAGAAATCCACATGCCCCGGCGTATCTAGCAGAGTTATCCCCCTGTTTCCCAATTCAAACTCCGCCTGCTTGGAAAAAATCGTAATTCCACGCTCCCGCTCCAGGTTATAGGTGTCAAGATACGCATCCTTATGATCCACACGCCCCAGCTTACGGATTTTTCCCGTTAAATATAAAATCCCCTCCGACAACGTAGTCTTACCTGCATCTACGTGGGCAAGGATACCAATGACAAGTTTCTCCATAGTATATTTAAAAGCTCCTTTTTCTTTATAAATTGATGTATACGTATTGGCTTAAATAAAATTAATCATTTGTATCAATTAAATAACTATTTTAACATAAGAATCTATATA # Right flank : TCCATAGCTGTCAGTTCCGCATATTTTTTATGCTTATTTGCTCATTTTTGTCGACTTCACTATATCTGTTCTATTTTCCCATTCATTTTATCATGTTTTTCATCAAAAAACCACTCATTCCCTTTGTTTACATACCATTGTCGACCTCTTCGCATTTTTATTTTATCGAACATCGACAGAATTTTTCATTATTAATCTACATCATCTGCAAATTCAATTCTATAATATCCCATTTCATCATATCGACATTGCATATGCAATAGTTTTTATTATTAAGTATAATTTTATAATACTTGGTTTATATTTGTTTTTTTATTTCTTGCACTTGTTTACTGATTTGTTATATACTTTAATTGTATCTGTTGTTCCACATTGGAATTTCTCATTGCCAAAGTTAAACAGGTATCTATATCTTTAACTGGCATCATTGGAGTAACAGAAAAGAGCGCGCATGGCAAATGCACGCTCTTTTCTGTTACTCCACCTTTATATCCATTTTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCAATATGGTTCTACTTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [88.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 3528-2965 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEF01000006.1 Ruminococcus sp. AF33-11BH AF33-11BH.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3527 36 100.0 29 .................................... TGGGGTTCGCTTTATCTAAATATACTCCT 3462 36 100.0 29 .................................... TACTGACAGGAGAGTGAGGCAAGATAGGA 3397 36 100.0 30 .................................... CGAATTCCATGCCCTCTGTACGTCCTTGCA 3331 36 100.0 30 .................................... ATGACATACAAGCTGATTGATATGTACAAA 3265 36 97.2 30 .........T.......................... CTACCTGGTATGTGACAGTGTCACCAACCA 3199 36 100.0 30 .................................... AACGGCATCAGAATTAAATCCATATGTTGT 3133 36 97.2 29 .........T.......................... GATAAGTTTTCTTAAAGCTTCCTTAATCT 3068 36 97.2 30 .........T.......................... CATACGTGCGATAAATGTTGTCATATCTTT 3002 36 88.9 0 .....................A...A.A...T.... | G,A [2968,2972] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.8 30 GTTTGAGAGCAGTGCAAATTCGTAGGGGAATCAAAC # Left flank : CCAAAATGACGACAAGAATGCAGAATGTTGCGGTAGATGAGAGTCATTATCTGGAAACAAAGGAAATGATTGGAAAATGGGAGCAATACCTCATGAAATTATCATTGGATCTGGTTGGAGCTTTTGAATTTTCAAAAATATCAATTGAGACATTGATTAAAGCTGCGGGAATTCGTGTAGACGATGATTATGACAACCTGGGAGAACAACTGTTGGATTATTTTGAATTAGTTCAGGAATATGATGGAAAGAAATTATTCATTCTGGTAAATTTGCGGAGTTATCTTTCTGATGCAGAGATGAATTTATTTCTGCAGAATATAATAGAAAGAGATATACAGATACTGATACTGGAAAGTAGCGAACATCCAATTCTTGAATGTGAATGCAGACATATTGTGGATGCAGATTTCTGCATTTTGTGTTAGTATAGGGGTGAGTAAATACAACTTGCGAAATTGCACAAGTGATTCGCAGATCATTTATTTCAAACATTTGAG # Right flank : AGTAGTTTATCTAAATTAAATGATTTTATAGAAAGAAAGCAGGTGAAACGCAATGAACGTTATATGTTTCCACAACCCGGATGAAGAAAATGGCTATTTGAGCAACTGGTATCTTAGTCATTTCACAGTCAATGGAATAGATTTTTCGTCAATGGAGCAGTTTATGATGTATCAGAAGGCATGTCGCTTTCATGATGAAAAAATAGCTAATGACATACTTCATACAGATAATGTTGCAGAGATTAAGAAATTAGGCCGTAAAGTACATGCCTATGATGAAAATGTCTGGAATGGTGTAAGGCAGCTTATTGTTTATGAGGGATTAAAAGCGAAATTCAGTCAAAACGCAGAATTGAAACAAAAACTTGTTGATACAGGTGATGCTGTGTTAGCTGAATGCGCAGTAAGAGATCAGATTTGGGGAATTGGTTTATCCATGAGAGATCCAAACAGGTTTGAGCGAAGCAAATGGAGAGGCAACAATCTTCTGGGATATGCTT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGCAGTGCAAATTCGTAGGGGAATCAAAC # Alternate repeat : GTTTGAGAGTAGTGCAAATTCGTAGGGGAATCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //