Array 1 1490-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUG01000011.1 Methylomonas methanica strain R-45363 contig_10_(6..40727), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1489 29 100.0 32 ............................. TATTCAGGGGGCTCAAGGCTTAACGTTGAGAG 1428 29 100.0 32 ............................. TGTAATCTGTCACTGTAATGTGATGTAAATCA 1367 29 100.0 32 ............................. TATTCAGTTGTAAGAGAACACCCATCGACAAA 1306 29 100.0 32 ............................. CGCGCAGGCTGTTGACGTTTCGCTTTTTTTAT 1245 29 100.0 32 ............................. GGTATCGGGCGGCAAATCAGGGCAGACCATAC 1184 29 100.0 32 ............................. AAATGTTTTTGATTGAAGAGCTAACCGATGAA 1123 29 100.0 33 ............................. TACGAATACCAATCAGTGATACCGCTATCGGAA 1061 29 100.0 32 ............................. GCAAATGCCGAAGGCCTACATAGCTGTCGTTG 1000 29 100.0 32 ............................. CCACCCTAACGTTTTAAAAATTTCATCCATCG 939 29 100.0 32 ............................. CGATAAATACAAACAGATCTCGATGGATATCG 878 29 100.0 32 ............................. ACAAACAAAAGGGGCGGATGGCCCGCCCCGTG 817 29 100.0 32 ............................. TCTAACGGTTTTCATATCCCCTCACCCTTGCC 756 29 96.6 32 ............................A GTGGCAGAGCTGACCATCAAATTGAAATTTAA 695 29 100.0 32 ............................. CGATTCAAAAATAGATCATGATTTTAAAAAAA 634 29 100.0 32 ............................. CCGGCGTCGCCCAGATCCCACTGTGATTCGAT 573 29 100.0 32 ............................. GTTTGCTCGATCAGCAACGCGCAGGCGTCCAT 512 29 100.0 32 ............................. GTTTGCGGGATTTTCAACTGGCCTTTCACGCC 451 29 100.0 33 ............................. CATTTAAATCTGCCCCCATGGCTACACTAATCA 389 29 100.0 32 ............................. CGTAATTAACGGCGATTCTGTGATGGCTGATC 328 29 100.0 32 ............................. AGAACGTGCCGTAGTTGGTTGTATCCTCGCCT 267 29 100.0 32 ............................. GTTGAGTTGTACATCCTGGATCTCAACAGCAT 206 29 100.0 32 ............................. TTACGCGGCGTACCACGCTGGCCCAATACGTC 145 29 100.0 32 ............................. ATGTGACGCTTGAAATGAATATTACTGATGAC 84 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CCGGCCATTCCCAACACAGAGAGTATCGGCGATGTTGGTCATCGTAGTTGAAAACGTTCCGCCCAGGCTGCGTGGGCGCTTGGCGGTATGGCTAATCGAAATTCGCGCCGGCGTCTATGTCGGCGACTTGTCTGCCAAGGTGCGCGAAATGATCTGGTCGCAAATCGAGGATGGCTTGGAAGATGGCAACGCGGTAATGGCTTGGTCCACCAACACCGAATCCGGTTTCGATTTTATGACGCTGGGTAAAAACCGCCGCCTGCCGGTCGAACTGGACGGTTTAAAACTGGTGTCGTTTTTTCCGCTGGAAGATGCGGATTTGTCTCCCTAGCCCTCAGGGAGATGGCCGGGGTGAGGATAAAATGCGCACTAAATTCCTGCTGGGATATAGGGCGCTGTAAGCGGTTTCGTCGGCTTTTTAACAACTTGGAAAAGGCAAAAAATTCGGTAGAAATTTAGCCGGGTTATTTTTATATGCGTAACAATAAGTTACGATTAGT # Right flank : GCCGCGACGGATTCAGGCACCTTCGAAGACGGCGCGTTCCCCGCACCCGCGGGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-2124 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUG01000129.1 Methylomonas methanica strain R-45363 contig_90_(56..27625), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 1 29 96.6 32 ...........C................. CCGCGACGGATTCAGGCACCTTCGAAGACGGC 62 29 100.0 32 ............................. GCATTATTTACGCCGTCGATGATGCAGGAAAT 123 29 100.0 32 ............................. GGGGAGAGGATGTTTAAGGCTAATTTGTTGGA 184 29 96.6 32 .........................G... TAATAAATAACCAAGAACAAATAACCAATACA 245 29 100.0 32 ............................. GCAATCGTGGAAACAGCGGGACATTTGGCGGA 306 29 100.0 32 ............................. TGGGCTTGCGATCTGGATGCGGAGCGGATGTT 367 29 100.0 32 ............................. TAGGCGTTGTCCTGTGTGTAATTCGGCCACGG 428 29 100.0 32 ............................. CTGTGCGGTTTCGAACTGTTTATCGTCGCCAA 489 29 100.0 32 ............................. GCAGCGGCGCCGACAGTAGCCGCGTCAGTACC 550 29 100.0 32 ............................. TAATCGCCCATCGTGGTTTTGCTGTAGAAATT 611 29 100.0 32 ............................. CAGTGCCATCCTCTAGCGTGCCTTTTGAATGT 672 29 100.0 33 ............................. GGAGGAACAAACCGTTATCCATGGGAACCCCGC 734 29 100.0 32 ............................. TCGTTGCCATACCACATATCTTTGAATAGCTA 795 29 100.0 32 ............................. TGAGGTGCTGCCAAGTATCTATGCTAAGGAAC 856 29 100.0 32 ............................. TCAGCGTTAAACATGTCGAGTTCGTCGAATGC 917 29 100.0 32 ............................. TGTGGATGATGACAATCAAGCACGTGTTCTAA 978 29 100.0 32 ............................. GTGGTAAAGCTCACCAACTTATGTATGATGCT 1039 29 100.0 33 ............................. CAAATCAACACCACCAAAGATGTGGATGTGGAA 1101 29 96.6 32 ............................C TTTGCGTCCACGTTTTCTTTGTGTCACGGTTT 1162 29 100.0 32 ............................. GGATTAGCACCACTAACGAAAGAATCTAAGGC 1223 29 100.0 32 ............................. GCGGCAGGTTTTGATTTGTGCCGCTGACACCT 1284 29 100.0 32 ............................. CAAGACAACGACAGCAAAATAGACGGCGCGAG 1345 29 100.0 32 ............................. TATCGAACATCCAAACCCCGGAGTATGTTGAT 1406 29 100.0 50 ............................. CCAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACAAGAAC 1485 29 100.0 32 ............................. AAAAACTAAAAATGCTCGAAGAGTGGCAAGCC 1546 29 100.0 32 ............................. CCAGTAACCACGGCACGCCGGTATCGGATAGC 1607 29 96.6 32 .....................T....... GTGCCGGCGATGATGAAACCGGTGGCGATGAT 1668 29 100.0 32 ............................. TAAATTACTGTGCTGTCAATGACGTTGCAACG 1729 29 100.0 32 ............................. GCCGGCCCATAGTTCGCGTTTGGTCTGGTCAT 1790 29 100.0 33 ............................. CACTGTCAGAATCATCGTTTTACCATTACCCTC 1852 29 100.0 32 ............................. ACCGAGATTCCAGGTAGCCTTATAAAAATTCA 1913 29 100.0 32 ............................. CAACGTTCTTGCCCCAGAGATAGCCGAGCAAA 1974 29 100.0 32 ............................. GCGACGACCATATACGCAACCTCAAAACTGCG 2035 29 100.0 32 ............................. CTGGTGGACAGTAGCAAATAGCCGGCGACTTT 2096 29 89.7 0 ..........................TTA | ========== ====== ====== ====== ============================= ================================================== ================== 35 29 99.3 33 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : | # Right flank : ACTTGTTGTTGCCTTTCTGTGGCTCTGTTGCAAGTGTCGATACATGGTGTACGGGGGTTATTCTGCCGCAACGGGTATTTCTGATCGGTTTACCGGCAGGGAAATTGCTAAAATGGCTTGTCGGCAGGCGAAGTGGATGATCTCCGGTATTCGTTGATTCGGTTCGTATTGGCTCGGTTCCCCGGGATTAGAAGAGGAATTTATATGATGTTGCAGCAAGGCTTCGCCGAAGTTAACAGGGTCGATGTGCCGGGTATGACGGCCTTAAGCGGCCGCAAATGCCGCGGATTTGCTGTTGTCATTAACTTGATATGATCAATATTCCACCCAAACGCGGTCTGGGCCGGGGGCTTGAAGCTTTATTAACCGATATGCCGGCTAAACCGGTAACGGATAAACAAAGCATTAAGGCTGATGCAGTGCAGGTGCGAGCTGTCCGCCAAGAAAATAGCCATTTGCTTCAAGAAGCCGAAGCGTTAAAGACCCTGTTGGAGGAGCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38151-37703 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUG01000071.1 Methylomonas methanica strain R-45363 contig_3_(1..123354), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38150 28 100.0 32 ............................ AAAGCCGTCTCAGCCGGCCCCAACCCCGCCAA 38090 28 100.0 32 ............................ ATTGATCGGCGATCCTGGCGACGGCGGCAACC 38030 28 100.0 32 ............................ AAAGCCATCGAGAAGCAAGTCTCCAATTCCAA 37970 28 100.0 32 ............................ GTCTCGCACTGCCCGGTCGAATGCTTCGAAGG 37910 28 100.0 32 ............................ GTATCCCGGTTGGTGGGACCGACGCCGATAAA 37850 28 100.0 32 ............................ AATATCACGCAAGACAGTTTGAAGCGGATTAT 37790 28 100.0 32 ............................ AGCATAGCGCCGAGCGTGCCGAGTGGTTGGTT 37730 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : CATTGCACCGGTGTTCGACCCGTACCCGACAAGCTGCTGGGATACGCGGTTTATCGGCGCGCGCAACCCAAAACCAACCCGGAACGATTGGCGCGACGCTATGCCAGACGCCACGGACTGGATTTGGCGACCGCGCTGAACATGACGGTGGAAGTGCGCGCCGCGGTGGAGAACGAGGCTTATCCGCTGGCGTTTCGTTATTGCGATATGCTCAAGCCTTCGGTGGCCTTGCCTTTTATTCGTCTGCAAAGCTTGAGTGGCGGGCAAACCTTCTGTTTATGGGTCGCCAAAACCGAAACCACCGCGCCGGTGGCCGGCAATTTCAACGCCTACGGTCTGAGCAGCGTAGCCACCGTACCGGAATTTTGACCCAAAATTTTCCGCTCTTTAACAATATGAACTAAATCAGCCGGTTACGAACAACAGCTTTACGGATGGTAAAAACAGGTCAAACCGCCCGCAACCCTTGTCGCAACAGGCTTCCCGTTTCGTTATAATCA # Right flank : TACAAATGTCTTAAGTGCGGGAAACACTTCCCGGAGATTATGGCAACCGTTCAGTGACAGAGCAGTGGATTGCGCGCCGATTCGCCATTTTTGCTGCATATCGCGGCCGAGACCATCTAGTCAGCACCGGAATACAGCCGCCCACATGGTAGTTATATTGCTGGTCGCTATCGGTTTTTACCCGGAAATAAGCGGTCATCCCTAGGCCACCCGGTTTCTATCGTAAATTGGTTTTTTCCCACTCCCAGAGCCCGAACGGTTCTGTCCCTCAGGGCATCTTGAGTCACGGCACGCGCAACACAAGCGCCGCTCAGTTTTTATTCAGCCACCTACAAATAGGCAGGGAACCCTACCAGAGTAGGGTGTTGGGACGCTAGGCAGGTTTGTTAACATGTATTTCGAAGTCCACTATTGGACCGACCATTTTAAATAGGAATTTGCCATGAAAATCAATCTGAAATCCCTTGCACTAGGCTTAATGCTGCCGGTATTGCCGGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13358-13751 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUUG01000089.1 Methylomonas methanica strain R-45363 contig_56_(21..18080), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13358 28 100.0 33 ............................ TGTCAGTTATCTGGACAAGACATTGTCGTCTGC 13419 28 100.0 33 ............................ CCATACACACGCCCCCGCACAAACAACGGATGC 13480 28 100.0 33 ............................ TAATAGCAGTTGCTGTCTTCCCGGTACCTGTCG 13541 28 100.0 33 ............................ TGGAGGTAGCGTTACTAGATAACTACCGACATA 13602 28 100.0 33 ............................ CAAGCCCGTGATGTTGCGCCAGGTGCAGATTTA 13663 28 100.0 33 ............................ CCGCAACGAATCACGGCAATACGAAAACATGCC 13724 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : AAGCCGGAAAAACAAACTGTATTTCGCCTTTCGCGAGTTGGGCCGGGTCGTCCGCACCATATTCCTGCTGGAATATATCTGCGACGACGCGCTACGCCAGGTTATCCAGGCGGCACAAAACAAGTGCGAAGGATTCAACAACTTTGCTCAGTGGGCCTATTTCGGATCGGACACCATCGAGGAAAATGTGCGCGAGGATCAGTTGAAGATAATCAAGTACAATCACCTGATTGCCAATCTGATGATTTTCCACAACTGTCATACGATGACGCAGGCGTTCAAAGAGCTTGAAGCTGAGGGAATGAAACTAACGCCAGAATTGGCCGCTGCGTTTAGTCCATTTCGCACACATCACGCCAATCGTTTCGGCAAATACGAGCTTCGGGAGCGGGATTTGGAACCGATTGACTACGGTGTGATGTTCCAGATGTAATCAAAATCAGGGATGTTACTCATTTACGAAGGAATCCTTACGCTCCCCCATACCGAGCTGCAATTCA # Right flank : CTAAGAGCTGTAACATCAGATGCGAAAAAACCTTCCACTTGCACACCCAAGGTCATGTGAGTTGCGCGGCTTGTGTGTTACGTGCTGCACACTAATTGAACCAACTTGCACATGAGAATCTGGAGAAATCAGCCACTTAAAGCCGTACGTAACGGCGGCAAAATATTGCCGCTTATTATTGGTGCTAGCTTCGAGTAGCGGCAAGCCGATACCGAAAAGGCCATCAGAACGCCATAAAACTGTCAAAATTCGCTGGCACAAATTATGCTTACAATTTAAAAACTGATTTTGAATGTTTGAATTACCGTTTAACAAGGAGATAGAGCATGTTTGTAAATACGACATCGAATACGCACCCGACTTACGGCACCTCATCCGTTGCCCGCAATTATCAATCTAACTCAGCCAACAATATCATCGCTGGTAATACTGCGAGTAGCGGTGATAGCGTACAAATAAGTGGCTCCGCATATAAGGCTTTAAACGACTCAAATGCCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //