Array 1 81360-83463 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNX01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81360 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 81421 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 81482 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 81543 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 81604 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 81665 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 81726 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 81787 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 81848 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 81909 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 81970 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 82031 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 82092 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 82153 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 82214 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 82275 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 82336 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 82397 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 82458 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 82519 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 82580 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 82641 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 82703 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 82764 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 82825 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 82886 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 82947 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 83009 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 83070 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 83131 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 83192 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 83253 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 83314 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 83375 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 83436 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 99971-102013 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNX01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99971 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 100032 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 100093 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 100154 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 100215 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 100276 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 100337 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 100398 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 100459 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 100520 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 100581 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 100642 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 100703 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 100764 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 100825 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 100886 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 100947 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 101008 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 101069 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 101130 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 101191 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 101252 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 101313 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 101374 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 101435 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 101496 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 101557 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 101618 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 101679 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 101740 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 101801 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 101862 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 101923 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 101984 29 93.1 0 A...........T................ | A [102010] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //