Array 1 201-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969468.1 Streptococcus sp. DD11 scaffold00077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 200 32 100.0 33 ................................ ATCGCCGAACCAAAAGCCTGCGACATATGCAGA 135 32 100.0 34 ................................ AAGGGTGCCAGCTGGTCTGATAATGTTTGGGCCA 69 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : GAGCGCGAGCCTGAGTTACACATCGACACCTAGAGGACTCGCGCAAAAGAAATAGAACTATAGTGGTAAAAATCTAGTTTTTATTAAGGAAAAGAGCCTAATAAATCTTAGATTTAGCCACAAACGGTGCAACTATGCGC # Right flank : TTGGAATGCTGAACCTAACATGAAAGTCCAACGGTGTC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 66481-65945 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969397.1 Streptococcus sp. DD11 scaffold00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 66480 29 100.0 47 ............................. CGAATGCCAAGTTCTTCCTGCAATAAATCCAAATCAAGGTAAGACCC 66404 29 100.0 44 ............................. TTTATTCTCCCCCTTTCTGTCCAGGGTTCGTGTTCTGTAAGACC 66331 29 96.6 42 ....................T........ TTTTCCAAATACGCCTTTACATCTGGATCTAACTGTTTAGAA 66260 28 72.4 42 A....TTC...-..C.....T.....G.. ATTTGTTTGGTTGTAATCGTCCAGCAGTAATCTTATTTAGGA 66190 28 75.9 43 .T...CTC...-..C.....T........ GTATATTGAGGAGTGTCATCAGAAGGTGTAATATAGTTTAGAA 66119 28 82.8 45 .....TTC...-........T........ TGTTGTTTTTCCGCTTTTTGTATTTTTCGTATGTTTGGTAAGAAC 66046 29 100.0 44 ............................. AGAATGAATTTTCATATTCTTCTCCTTTAAATTATGGTAAGAAC 65973 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================== ================== 8 29 91.0 44 CCCCAGCAACCTCGAGAGGGGACGGAAAC # Left flank : AGTCACCTCGGGAGGGGACGGAAACATTAAATCCGAACGCTCAGCCAACAATCACCATGATGTAAGAACCCCCAGTCACCTCGGGAGGGGACGGGAACATTTCAATTTGTTCTGTACCAATGACATAATTTCCTGCACAATTCACTTCGCGAGGGGACGGAAACTCTTGCCCATTTGAACATAGTTCAAAATCGTCACTTGTAAGAACCCCCAGCAACCTCGTGAGGGTACGGAAACGAATGCATTTCAGCATGGAAGAAATCGCTTACTTGTAAGAACCCCCAGCAACCTCGAGAGGGGACGGAAACTTTCGGTTCATAGGCCCAAACTTGTGCTTTTTCTACTGTAAGACCCCCCAGCAACCTCGAGAGGGGACGGAAACAATACACCCATAACCGCTAAATTTTCCATAATGCGTAAGAACCCTCAGCAACCTCGAGAGGGGACGGTAAACATAAAGCGGTCCTTGAGATACTNNNNNNNNNNNNNNNNNNNNGAAA # Right flank : GCATATTAAACTCCTTATATTCTTTGTTTTCTATAGTAAGAACCCCCAGCAACCTCGAGAGGGGANNNNNNNNNNNNNNNNNNNNAGTCCCTAGTTAAGTAATCAAAAACCCTCGGTAAGAACCCCCAGCAACCTCGAGAGGGGACAACAAACTGGGAAATGACGCTTTTCAATAGATTGAGTATTTAAAATAAGAAAAGTCTTGACGACGCTTTCAAAATTTGATATGATAATAATTGTAAAAAATCAGTACTGATAAGACTTTAAAAGGGCGCCCTTGTTCGGTGAAAAATACTTTCACCGTTTTTGGGCGCTTTTTCTTATATAGAAGGGGATGAAAATGTGAAAAAAATACGATTGCACCTTTCAAAGACTTCTTTGAAGGATGATGATTTAGTCTGTAAGCTGCAGGGCTTTCTCATGGGGCGGATCTCTGATGACTTTGCCTCCTTTCTCCATCAGCAGGAGACCAATCCCTACTCGCTGAATCTTCGTTCGAC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCAGCAACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 2 80965-78333 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969397.1 Streptococcus sp. DD11 scaffold00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================== ================== 80964 32 100.0 35 ................................ AAAGTAGCTATGCACCATATTCCCGACCAGCAGAG 80897 32 100.0 35 ................................ TTCGTGTAGGTCATCAGTCATACTTCGTCCCCCGC 80830 32 100.0 34 ................................ TTCTTGCACAGGTCGTCGAAGTAGATAGCAAATA 80764 32 100.0 35 ................................ TATGCCGGCTGGAACATGACCAACGGCCCGAGTGG 80697 32 100.0 35 ................................ CCTGATGTAATTGAGGCTTACAAGTTGGCTGATTA 80630 32 100.0 34 ................................ GTGACACATTTGAAGCCAAACAGTCAGCTTGACC 80564 32 100.0 34 ................................ GTTACAAGCTGCCTGCCGTATCACGAATTTGGCC 80498 32 100.0 35 ................................ TTCAGTCTTCATGACATTAAAGAGATAAGACTTGC 80431 32 100.0 34 ................................ TGTCAGGGTAACTGCCATACGTTCGCGCAGTGGC 80365 32 100.0 33 ................................ TGTGCTGTGCGCCTTATAGACGTTTAACACAAA 80300 32 100.0 33 ................................ GGCAATGCCGTTGAAATTGACTTTTCCGATAGC 80235 32 100.0 46 ................................ NNNNNNNNNNNNNNNNNNNNAAGGAGACCGTACGAGGCCAAAGCGT 80157 32 100.0 35 ................................ TTTTGCCGACATGATATTTTGCTCTTGCAACTCCG 80090 32 100.0 34 ................................ CAAGTCTGCAGCTTATACTTTTTCAACACCCGAG 80024 32 100.0 34 ................................ CTCTGGATATATCCATCAGCGACTGCCTGCTTGG 79958 32 100.0 34 ................................ TTCAAACTTAGTGCCCTCGCCAGCCGCGGCTTTC 79892 32 100.0 36 ................................ TAAGCCAGTGCGTCGGTATGTCCGGGTTACTATCCC 79824 32 100.0 33 ................................ TTGGACACGCCGGGCCCTTGCTAAGAGCAGCCG 79759 32 100.0 34 ................................ ATGGCCGGCGTGGTCGTTAGCTATGCCGAGCTAA 79693 32 100.0 35 ................................ ACAGTGTCCGCACGGCTTCGCTTCCTCTTCACCTC 79626 32 100.0 35 ................................ TGTATTGCTCTGCAAAGGCCAGCAGCGCCTTGTCG 79559 32 100.0 35 ................................ AACGTTATAAGGCTCTTCCCAGTTGGAAAATGCGC 79492 32 100.0 35 ................................ TTATCCTCGTTCGTTTCCAGGAACACTACACTATT 79425 32 100.0 34 ................................ TACAAGTGTGGCTATGACGGCCAAGCGCAGCAAG 79359 32 100.0 33 ................................ TCAGGATTGGAGCGTTACCAATCACTCCCTTAA 79294 32 100.0 34 ................................ TGAAACTTCATCGGGTGTATAGTCTTGCATATTA 79228 32 100.0 36 ................................ AACAATTACTTTGAGCACCACCCGCTTAACAAGTCC 79160 32 100.0 34 ................................ TGGATAAGCCAGAGTTAAAAATTCCGGAAGAACC 79094 32 100.0 34 ................................ GAAAGCTAACTTACTGGACGAAGAACAGGGTATA 79028 32 100.0 34 ................................ CTGCACGCTGTAAGCAAGCTTGAAATGGTCGCAG 78962 32 100.0 35 ................................ ATGTCAGGGTTGAGTTGATACTGCTCTTCCCTAAA 78895 32 100.0 34 ................................ ATGTAGTTCGCTGTGTCGCTCTCTGCGCTGTCGT 78829 32 100.0 34 ................................ ATCAGCCTTTTTCTCTTGCTCTTCGGCCCATTTG 78763 32 100.0 33 ................................ CGGCATAAAAGGGATTTTTAGCTGTCCTTCCAC 78698 32 100.0 33 ................................ TGGGTCTTTCTCAGCCTGCTCACGATACTTTTG 78633 32 100.0 33 ................................ TTCGATGACGGCCGTATCAATCCGAATGGTCGG 78568 32 100.0 35 ................................ CGGTGCTAATGTCCTCTTTGCGGAAATCCCTGAAG 78501 32 96.9 36 ..T............................. CACACACAGCTTGGAAATACCGATACAAGGTTAATC 78433 32 100.0 37 ................................ ATCCCAGTACAGCCGAATGGTTTCCTTGCCCTGGTAC 78364 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================== ================== 40 32 99.9 35 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CGTGTTCAAAATTCGGTTTTTGAATGCTCAGTCACTCCCGCAGAATTTGTAGAGATAAAAAATGAACTATTAAGAATCATTGACCAAGAATCCGATAGTGTCCGATTTTATTTGCTTGGTAAAAATTGGCAGAATCGCTTAGAAACTATCGGTCGTGACGATAGCTACGATCCAGATGTGGGGGTGTTGCTTTTGTAAAATAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGTGGATTGAAATATAGGTCACGCTGTGACCCTCTACGGTCTCTTGCTT # Right flank : GTTTTTGTACTCTCAAGATTTAATTGCAAGACCAAAAAAGAGGCCGCGTCGCCTCTTTTTAGTCTGTTATTGTGTGATTTCTGTCGTTTTCTGAAGGAGTTCCTTATTTTTCTTTAGTTTTGCATTGGTTTGTTCTAGCTTTTCCTGTGATGTTTATGGTTGGAGGAGTAGCTGATCCAAAGCGGCAGTAGGATTTCTCTTAGTTTATCCCCTTCTGGAGCAGAAATGCTGTCATTGAAAGGAAGAGAAGCGGACAGATTATTTTCAAACCTTGGTTTTTCCTTCCAATGTTTCAGGCGCTGGCTTAGCTGGGACTGGACCTCTTGGCTGGCTCGCTGGTGGCAGTTGTTTCATCTGTATACCAGTAAGGAAAGGCTGTGTTGGTGTGTCTTTCTTGTTCCCTGGTATGTGCTTGGCCTGATAAAAGGTGCGAACGGCTCGCCCGGACTCGTTTTAGAGCTGTGTTGTTTCGTTTTTATTTATCATAAAAGAGGCNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-224 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969481.1 Streptococcus sp. DD11 scaffold00090, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1 26 81.2 33 ------.......................... GGGATTTTGAGTACACCAAACCTGCAGGCTTGC 60 32 100.0 34 ................................ CAGTCCCAGAAATCGAACTGAAAGAAGTATCTGT 126 32 100.0 35 ................................ TCGCCTTTATCACCCTTAGCCCCTGCTGCTCCGTC 193 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 95.3 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : | # Right flank : TTCGATGCCATGAAAGCCGCGGCTGGCGAGGGCGTCGCACCCTTCGCG # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //