Array 1 219261-215070 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSXO01000002.1 Streptococcus suis strain WUSS424 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 219260 36 100.0 30 .................................... TCAAAGATTATGAACGTGATAGTAACGCAC 219194 36 100.0 30 .................................... CGATAGCCTCGGTCTTGACCTGGTTAGCCC 219128 36 100.0 30 .................................... ATATTCTTCATATCACTGTTAGCATTACGT 219062 36 100.0 29 .................................... TACCCTTTTAAAATCGCTGAAAAAGCAGA 218997 36 100.0 30 .................................... TCATATCACCGAAGTTATAGATTGTCATAT 218931 36 100.0 30 .................................... CATCATTGTCTCTTCAGCTTGTTTCATTGT 218865 36 100.0 30 .................................... TGACGACTTCCTGTTATCCGCCAGAGCAAC 218799 36 100.0 30 .................................... CCACATCACGTTGATACGCTTCCCACGATA 218733 36 100.0 30 .................................... TATCACATTTGATACAGTAACGAAACAGTT 218667 36 100.0 30 .................................... AGATTATAACACCTTTACTGAAATTCACTA 218601 36 100.0 30 .................................... AAGGCGAAAATCAAAAATCCGATAATCTCG 218535 36 100.0 30 .................................... TGGCTCAAGGTTATCAAACATCTACATCTA 218469 36 100.0 30 .................................... GAAAAAATCTTTTTTAGAGAAAGAAATTTC 218403 36 100.0 30 .................................... TGTTAAAGATGAAGATGTTGACGTGTTTAA 218337 36 100.0 30 .................................... GATAATAAGGTGTGCAGTTGGTTTGAAACC 218271 36 100.0 30 .................................... GTATGATTCCGTTGAAAATTGTACTCGGTG 218205 36 100.0 30 .................................... ATAAGACGGTTCTCATGTGTTTCAACTTGT 218139 36 100.0 30 .................................... TATCCAAAAACAATCGAAGCCATTCTCAGC 218073 36 100.0 30 .................................... CTGTCTATCTCAACAAAGACTCAACTTATG 218007 36 100.0 30 .................................... TCTCAGGACTTCTGATTCTAACGGCTCTAC 217941 36 100.0 30 .................................... TTGATCATCACTGTCAATAAAGGAAAAGAT 217875 36 100.0 30 .................................... CATCAAGAGGTTACAACACTGCGTCTTACT 217809 36 100.0 30 .................................... TGACAGTCTAACTGGGGCACTTGAGGCCTT 217743 36 100.0 30 .................................... CTATCGCTGTGGCAGTTGGATTGATTGCTG 217677 36 100.0 30 .................................... CGTTATCGGCATATTTAACCCATGTATACA 217611 36 100.0 30 .................................... ATAGTCATACCAGGACTGTTCAGTCTCCGT 217545 36 100.0 30 .................................... AACATCTTCTATATTCTTAACATACCCTCC 217479 36 100.0 30 .................................... GCTTGAAAGTCAAGGACGTTAAGGGTGACA 217413 36 100.0 30 .................................... TACAAGCCTATGGAAATTTTTATGCTGTTA 217347 36 100.0 30 .................................... TGAAGCAAATGCTACTTTCACAGAAGCTTT 217281 36 100.0 30 .................................... TAACGCTTATGCGTTTCCTTATGTTATTGT 217215 36 100.0 30 .................................... TTCAAGTTTGTCTTTGCTCGCACGAGCATT 217149 36 100.0 30 .................................... TAATGGTAGAGATGGTGCTCCTGGACCCGC 217083 36 100.0 30 .................................... CACATTCGTAGCGGTAGATGATGCACGTCT 217017 36 100.0 30 .................................... GTCTTCGTAATGTTTCTGCAGAGACAGAAG 216951 36 100.0 30 .................................... GCACGGCTTAAACGTGTAACAGTAGCTGAT 216885 36 100.0 30 .................................... TGGGCTGAAAATCTATTTGAAAGTTCCGAA 216819 36 100.0 30 .................................... GGCTGACGTCACTAGTGAGATGATACCGTC 216753 36 100.0 30 .................................... AGACTGATCGCAATATTCACCGTCTCCTTG 216687 36 100.0 30 .................................... TTTTCTCCTCTCTTATGATATAATAAGAGC 216621 36 100.0 30 .................................... GTATAATCCATCTTTATAGTCATATCCAAG 216555 36 100.0 30 .................................... GTTAGACATATAGTCAATCGCATTACCCCA 216489 36 100.0 30 .................................... AACGTGGTAGACGCCAATCTTAGTCACGTT 216423 36 97.2 30 ..........................A......... TAAATTAGTATTAACAACTATTGGAGTAAT 216357 36 100.0 30 .................................... TTCAATGCAACAAAAAAAGCACCAACCACA 216291 36 100.0 30 .................................... CGGCCTGCGCGCTCTCTTCGATTGCTGCGA 216225 36 100.0 30 .................................... GTTAGACACCCACAAGACACACAGCATAGA 216159 36 100.0 30 .................................... TTTACCAGAATACTTCATGGATTAAGCCCC 216093 36 100.0 30 .................................... AAACTAATAATGGAACGACGAAAACAACAA 216027 36 100.0 30 .................................... GAGCAAGCCAGTATCTAACTGCTAGCCGTG 215961 36 100.0 30 .................................... CGGGAACGAGCACAAATATTCAATTTGGTC 215895 36 100.0 30 .................................... TGAGAAAGGAAAGGAAATCCTTTTACACTA 215829 36 100.0 30 .................................... TCGCTTGTCAAGCCTTGAGACTTACAAGGA 215763 36 100.0 30 .................................... AGAAATATATGTTACCGTGTGTTCAGTTAA 215697 36 100.0 30 .................................... GAGTGAGGGGGCGAAACTCCAACAGTCACT 215631 36 100.0 30 .................................... TCTCAGAAAATGGGCTTCTTCGACACCTAG 215565 36 100.0 30 .................................... GTTTTCTGGCACAATGTAAACGGTTTTCGT 215499 36 100.0 30 .................................... TACCGTAGGTGTGAAGGTGTCAGCATTCAA 215433 36 100.0 29 .................................... TTTGGTCTATCGGCTAGCTTTAGCGGTGG 215368 36 97.2 30 ..............C..................... CACCATTACACAAAACCAAACACCAACATC 215302 36 97.2 30 ..............C..................... CTATTCGTGGTTATCAACCATCTGTACATT 215236 36 97.2 30 ..............C..................... ATGATATGTGATTGTGATGGTTGTCTTATC 215170 36 97.2 29 ..............C..................... CCTATCACACAGATGATTGGTTTCCTTCC 215105 36 91.7 0 ..............C...................CA | ========== ====== ====== ====== ==================================== ============================== ================== 64 36 99.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTATTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATTGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTAGCTGAGACGAATGGTGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : TAAACTTTCAAAGTTCAAATGACGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTCCCTCTTGTCCATTCAAAGTTTTCCATGATATACTATATGTAATCGTTTTACTTCAAAGGAGATAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGGCTGACGGCATGATTGTTGGGCTAGGGACTGGCTCGACGGCTTACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAGGAGGGCTTACAAATCACAGGCGTAACGACCTCTCATGCCACGGCTGAGCATGCTGCGTCCCTCGGGATTCCCCTAAAAAACATCGACGAGGTCGATCACGTGGACTTGACGGTGGACGGAGCCGATGAGGTGGACGGAGCCTTTAATGGTATCAAGGGTGGCGGAGCGGCGCTTCTCATGGAGAAGGTGGTCGCGGTCAACAGCAAGGACTGCATCTGGATCGTCGATGAGTCTAAGGTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 141302-145624 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSXO01000001.1 Streptococcus suis strain WUSS424 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 141302 36 100.0 30 .................................... TCAAAGATTATGAACGTGATAGTAACGCAC 141368 36 100.0 30 .................................... CGATAGCCTCGGTCTTGACCTGGTTAGCCC 141434 36 100.0 30 .................................... ATATTCTTCATATCACTGTTAGCATTACGT 141500 36 100.0 30 .................................... ATATTCTTCATATCACTGTTAGCATTACGT 141566 36 100.0 29 .................................... TACCCTTTTAAAATCGCTGAAAAAGCAGA 141631 36 100.0 30 .................................... TCATATCACCGAAGTTATAGATTGTCATAT 141697 36 100.0 30 .................................... CATCATTGTCTCTTCAGCTTGTTTCATTGT 141763 36 100.0 30 .................................... TGACGACTTCCTGTTATCCGCCAGAGCAAC 141829 36 100.0 30 .................................... CCACATCACGTTGATACGCTTCCCACGATA 141895 36 100.0 30 .................................... TATCACATTTGATACAGTAACGAAACAGTT 141961 36 100.0 30 .................................... AGATTATAACACCTTTACTGAAATTCACTA 142027 36 100.0 30 .................................... AAGGCGAAAATCAAAAATCCGATAATCTCG 142093 36 100.0 30 .................................... TGGCTCAAGGTTATCAAACATCTACATCTA 142159 36 100.0 30 .................................... GAAAAAATCTTTTTTAGAGAAAGAAATTTC 142225 36 100.0 30 .................................... TGTTAAAGATGAAGATGTTGACGTGTTTAA 142291 36 100.0 30 .................................... GATAATAAGGTGTGCAGTTGGTTTGAAACC 142357 36 100.0 30 .................................... GATAATAAGGTGTGCAGTTGGTTTGAAACC 142423 36 100.0 30 .................................... GTATGATTCCGTTGAAAATTGTACTCGGTG 142489 36 100.0 30 .................................... ATAAGACGGTTCTCATGTGTTTCAACTTGT 142555 36 100.0 30 .................................... TATCCAAAAACAATCGAAGCCATTCTCAGC 142621 36 100.0 30 .................................... CTGTCTATCTCAACAAAGACTCAACTTATG 142687 36 100.0 30 .................................... TCTCAGGACTTCTGATTCTAACGGCTCTAC 142753 36 100.0 30 .................................... TTGATCATCACTGTCAATAAAGGAAAAGAT 142819 36 100.0 30 .................................... CATCAAGAGGTTACAACACTGCGTCTTACT 142885 36 100.0 30 .................................... TGACAGTCTAACTGGGGCACTTGAGGCCTT 142951 36 100.0 30 .................................... CTATCGCTGTGGCAGTTGGATTGATTGCTG 143017 36 100.0 30 .................................... CGTTATCGGCATATTTAACCCATGTATACA 143083 36 100.0 30 .................................... ATAGTCATACCAGGACTGTTCAGTCTCCGT 143149 36 100.0 30 .................................... AACATCTTCTATATTCTTAACATACCCTCC 143215 36 100.0 30 .................................... GCTTGAAAGTCAAGGACGTTAAGGGTGACA 143281 36 100.0 30 .................................... TACAAGCCTATGGAAATTTTTATGCTGTTA 143347 36 100.0 30 .................................... TGAAGCAAATGCTACTTTCACAGAAGCTTT 143413 36 100.0 30 .................................... TAACGCTTATGCGTTTCCTTATGTTATTGT 143479 36 100.0 30 .................................... TTCAAGTTTGTCTTTGCTCGCACGAGCATT 143545 36 100.0 30 .................................... TAATGGTAGAGATGGTGCTCCTGGACCCGC 143611 36 100.0 30 .................................... CACATTCGTAGCGGTAGATGATGCACGTCT 143677 36 100.0 30 .................................... GTCTTCGTAATGTTTCTGCAGAGACAGAAG 143743 36 100.0 30 .................................... GCACGGCTTAAACGTGTAACAGTAGCTGAT 143809 36 100.0 30 .................................... TGGGCTGAAAATCTATTTGAAAGTTCCGAA 143875 36 100.0 30 .................................... GGCTGACGTCACTAGTGAGATGATACCGTC 143941 36 100.0 30 .................................... AGACTGATCGCAATATTCACCGTCTCCTTG 144007 36 100.0 30 .................................... TTTTCTCCTCTCTTATGATATAATAAGAGC 144073 36 100.0 30 .................................... GTATAATCCATCTTTATAGTCATATCCAAG 144139 36 100.0 30 .................................... GTTAGACATATAGTCAATCGCATTACCCCA 144205 36 100.0 30 .................................... AACGTGGTAGACGCCAATCTTAGTCACGTT 144271 36 97.2 30 ..........................A......... TAAATTAGTATTAACAACTATTGGAGTAAT 144337 36 100.0 30 .................................... TTCAATGCAACAAAAAAAGCACCAACCACA 144403 36 100.0 30 .................................... CGGCCTGCGCGCTCTCTTCGATTGCTGCGA 144469 36 100.0 30 .................................... GTTAGACACCCACAAGACACACAGCATAGA 144535 36 100.0 30 .................................... TTTACCAGAATACTTCATGGATTAAGCCCC 144601 36 100.0 30 .................................... AAACTAATAATGGAACGACGAAAACAACAA 144667 36 100.0 30 .................................... GAGCAAGCCAGTATCTAACTGCTAGCCGTG 144733 36 100.0 30 .................................... CGGGAACGAGCACAAATATTCAATTTGGTC 144799 36 100.0 30 .................................... TGAGAAAGGAAAGGAAATCCTTTTACACTA 144865 36 100.0 30 .................................... TCGCTTGTCAAGCCTTGAGACTTACAAGGA 144931 36 100.0 30 .................................... AGAAATATATGTTACCGTGTGTTCAGTTAA 144997 36 100.0 30 .................................... GAGTGAGGGGGCGAAACTCCAACAGTCACT 145063 36 100.0 30 .................................... TCTCAGAAAATGGGCTTCTTCGACACCTAG 145129 36 100.0 30 .................................... GTTTTCTGGCACAATGTAAACGGTTTTCGT 145195 36 100.0 30 .................................... TACCGTAGGTGTGAAGGTGTCAGCATTCAA 145261 36 100.0 29 .................................... TTTGGTCTATCGGCTAGCTTTAGCGGTGG 145326 36 97.2 30 ..............C..................... CACCATTACACAAAACCAAACACCAACATC 145392 36 97.2 30 ..............C..................... CTATTCGTGGTTATCAACCATCTGTACATT 145458 36 97.2 30 ..............C..................... ATGATATGTGATTGTGATGGTTGTCTTATC 145524 36 97.2 29 ..............C..................... CCTATCACACAGATGATTGGTTTCCTTCC 145589 36 91.7 0 ..............C...................CA | ========== ====== ====== ====== ==================================== ============================== ================== 66 36 99.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTATTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATTGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTAGCTGAGACGAATGGTGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : ATAAACTTTCAAAGTTCAAATGACGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTCCCTCTTGTCCATTCAAAGTTTTCCATGATATACTATATGTAATCGTTTTACTTCAAAGGAGATAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGGCTGACGGCATGATTGTTGGGCTAGGGACTGGCTCGACGGCTTACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAGGAGGGCTTACAAATCACAGGCGTAACGACCTCTCATGCCACGGCTGAGCATGCTGCGTCCCTCGGGATTCCCCTAAAAAACATCGACGAGGTCGATCACGTGGACTTGACGGTGGACGGAGCCGATGAGGTGGACGGAGCCTTTAATGGTATCAAGGGTGGCGGAGCGGCGCTTCTCATGGAGAAGGTGGTCGCGGTCAACAGCAAGGACTGCATCTGGATCGTCGATGAGTCTAAGGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //