Array 1 9123102-9123914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015726.1 Streptomyces sp. RTd22 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9123102 29 93.1 36 ....T.C...................... GTGGAGGGGCCAAACCTTCGGCCGCCAGCCCATCGC 9123167 29 86.2 35 A....T......T...A............ CCAGTTGCCCCTTGCATCCGCGTACCCGGACCGTA 9123231 29 86.2 35 .....T.......A...........T.G. CCGACTGGCGTCACACGATCCACGCCAGCGCGCCG 9123295 29 96.6 35 .....T....................... AAGTCCATCTCGGGCGTGATCAACGGGACGCCGTT 9123359 29 100.0 37 ............................. ATGTCCGCGCACGTCGACCGGCGGGGCAGTCCGCGAC 9123425 29 100.0 37 ............................. CCGGGGGATGGACGGTCAGCCGTGGGGTGCGCTGGTA C [9123436] 9123492 29 100.0 36 ............................. GGACGGGGGTCAGGGTGTCCCCCACCACCGTGTTGG 9123557 29 100.0 37 ............................. TCGAATGGGAGGGCGAGCTGAAGGACACCCTGCTGGG 9123623 29 100.0 36 ............................. TGGTGGCTGGCCGGGTGTTCATCACCCCGTCCGCCC 9123688 29 100.0 37 ............................. TCGACGAAGGCCCCGTCACCATCAGCGGCAAGTCGCT 9123754 29 100.0 38 ............................. CGCCACGCTCCTGTCCCTGGCCTGCTTGCGGGACCACT 9123821 29 100.0 36 ............................. CGGCTCGGTCGGCGGCCATCCCCGGGCCGCGCCCCG 9123886 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 97.1 36 GTTGCGACCCCTCCAGGGGTGATGACGAC # Left flank : CGCCCGCCGCACCTCGATCTCCGACAGCACCCACGTCCGCGACCCGGTCTCCTCCAAGAACTCCGCCGACGGCTCTGGCTGCACCCCTCCCCACCAGTGCGTATCCCCGGCCGCCAGGGTGTAGCCGAACACGAACCCGACGAGCCGTCCCTCGTCCCGCGCAACCACCAGGGTGAAGCCAGGTCGCGTGAGCTGCTTTTTCGCCCGGCGGCGGAACGCGGACGTCTTTTCCTCGCCTGGCTCCGCCCCGTACGCGTCCGCGTAAGCGTCACACAACTCCTCCAGCAGCGCGGTGGCATCCTCGCCGTCGTGGTGCGTCAGGGACACGGTGTTCATCGTCATGTCGGCAAGGCTAAGACGGTCCACCACGCGGGAACAGGGGCCCATACCCCACCAGGCGATCAGGCGTCTCTGAGGTCGCAGCTTCAGAGGTCCGCACAAACACGATGACCGAACCCTGCATATTGTTCAGGAATTAGCGTCACCGTCACCACGAAGAG # Right flank : CCCGAGGGTAAAGCCGCAGGTCGGAGCTGCCTTGCGGTGGCATTCCGGAACAGGTTTTGCAGCGATCCGGCGGTAGTGCATCAGTGCAGGTCAGAGCGATGAGCTTTCGGGGTGCCTCGTGCTGTGCCGAGTGGCTGTCAGTGGTGCCCGGTAGTTTGCGGGTTCGGTTCCACTGAGGGCAACTCCGTCAGCAGCGCTAGAGTCCTGAAGTACAGCTTGTAGCATGGAAAAATACACTTCGCTAGATTTGGTGGTAATCATCCCTTACCTTCCTGAGTTCAGCTAAGGTCCGATTCATCGCAGTGCCCACCCTGGGGGACATCGGTGGGCACTGGACAGAGCCGTTTGGGGGTGTAATGCGGATCAGGGTGGACGTCGATACGGACACACCAAGCCTGCGATGGGAGGACGTGCACGGGCCAGCGCGGGCGGTGATGTACGAGCTGCTCGGCAGCCAGGACACAGTCTTGGCCCGGACGTTGCACGACGAGGGGTGGAAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACCCCTCCAGGGGTGATGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 9132407-9133874 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015726.1 Streptomyces sp. RTd22 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 9132407 29 100.0 37 ............................. ATCACCAAGACGACCCCGCCGGTCCAGCTTGTGACGC 9132473 29 100.0 34 ............................. CAGGGGAACGGGACGGGGACGTGGCAGTACTCCG 9132536 29 100.0 37 ............................. ACGATGACGACTTCGGCGAAGTGGTCCGAGAGGACGC 9132602 29 100.0 37 ............................. CCCGGGAGCGGAACGCCAACCGGCGCGCTGTCCTCGT 9132668 29 100.0 37 ............................. ACGCCGACCAGGCCCACGAGTACGACGACGGCTACGG 9132734 29 100.0 40 ............................. AGACCATCCGCTACACAGCCGACGTCGTAGCCGTCACCCC 9132803 29 100.0 37 ............................. TGGACCAGGTGCTCGGCCGTGGCTACCGGGCGAGCGG 9132869 29 100.0 35 ............................. CCCTGGTCGTGGTCGCCCATGACTCCCTCGTCCTC 9132933 29 100.0 36 ............................. TCGGTGAGGGCGATGGAGACGAGACCGCGGTTGCTG 9132998 29 100.0 35 ............................. TGCGGGGCGAGCTGCCCGAGGGCGGTGGTCATCTG 9133062 29 100.0 37 ............................. CCAAGGGCGTGGGAGGCGCGGGGGGCGCGGGGGTCAG 9133128 29 96.6 39 .......C..................... CCGGTATCAGGATCTCCCAATCCAACCCCGGGTCAGCGC 9133196 29 100.0 36 ............................. GACATGGGCAGGTCTGGGTGCAGCATCGCGCCGGTG 9133261 29 100.0 35 ............................. GCCGGTCGTGGATCGCGCAGGACCCCGCGCGCGCG 9133325 29 100.0 36 ............................. AGGGTGGGGTCGATCCAGTCGCCGCAGAAGCAGCAG 9133390 29 100.0 36 ............................. ACCTGCATGGAGCGGGTCGACAGGGCGTCGAGCAGC 9133455 29 100.0 36 ............................. AGCTTGCACAGGCCCGGGGTGGCGCCGAGGCGGAAC 9133520 29 100.0 35 ............................. GCTGGGGAGGCGTGACGCGCGACGCGGGTACAGCC 9133584 29 100.0 36 ............................. CGCATACCGAGCTGGAGCACCGGGCCCCCGAGCCGG 9133649 29 100.0 35 ............................. GTGAGGTAGCAGGTGACGTACGACGGGGCTTCGTT 9133713 29 100.0 39 ............................. GGCGCGGTGAAGCCGTACGCCACGATGACGTCATTGCCC 9133781 29 96.6 36 .......................T..... GCGATCACGGTGACGGTGCGGCCGGGGCTGCGGCGG 9133846 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 23 29 99.7 36 GTCCTCATCAGCCCTGGAGGGTTCGCAAC # Left flank : GCGACGACCGTCTACCACCGCATGCTCAAGCGGAAGGTCAGTTACGAGGAACTCATCCACCTCGAAGCCCTCAAGATCGTCCGCATGTGCCTCGAAGGCAAGCCGTACAAGCCCTTCCGCCCCTGGTGGTGATCAGCATGTTCGTGATCCTTGTCTATGACACCGCCGTCGAACGCAATCCCAAGGTGCTCAAGACCTGCCGCAAGTACCTCCTCTGGACGCAGCGCAGCGTTTTCCAGGGCGAACTCTCCACTGCCCAGTACCGCGCGCTCATGGCCGCCCTGAACACCACCATCGACCCGGACTACGACAGCATCGTGACCTACACGGCCAGGTCCCCCGACATGGTCGAGTCCAGTACCCTCGGAGTCGCCCTGGGCGGCCCCGGCGACATCCTGTGAATCGCTCTGACCTGCGCAGATGCACTACCGTCGGATCGCTGCAAAATGGCGCTCGCAGATGCGATTGTTTGGCATTCTGACCTGCGACTTTACCGTCGG # Right flank : CACCACTTTCTCGACCATGCCCGCCTTGACCAGGACGCAGCCCTGAGGGTTTCGCGACTCGGACGTCGTGGCTGTGGGACTCATCAGTCCAGGAGTGGGCTCGGCGCAAGCCCCTCTCGACCACGGCCACCGCTCACAGGCCACCTCGTCTGCGAAGTTGCCCGGCAGGTCTGCATCTCGTAGTGATCATCAACGCATGAGGCTGAAGACCACTGCCGCGGCGAGCCCGCCCACGAACGCGCCGACGACCGTCTGAGCGGGTGTGTGGTCGCGGAGGGCGACGCGGGACCAGCCGATCAGGGCGACTCCGGCGAACAGCGGCGCCATGTAGAGGCCATAGGCGATGAGCAGGACTACGGCGACACCCGACGCGACGGCGGTGTGGACGGATACCTTCCACCACACGGTCACCGTGATGGTCAGGGTGAGGCCGGCGAGCATGGCGAGGACGAGGGCGAGGACTTCGCGGGGTCCGTCGAGCGCGACCAGGAGGCCGATGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAGCCCTGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //