Array 1 406-1914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYT01000039.1 Neisseria meningitidis strain NM2032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 406 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 472 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 538 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 604 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 670 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 736 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 802 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 868 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 934 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 1000 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 1066 36 100.0 32 .................................... CTTCCTGCCAATTATCATACATAAGATTTTGC 1134 36 100.0 32 .................................... CTTAAACCAACCGGGTATTCATACACAGCCAA 1202 36 100.0 32 .................................... CTTTAAAATAATAACCCAATACACGATGTTAA 1270 36 100.0 32 .................................... CTTCCTGCCAATTATCATACATAAGATTTTGC 1338 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 1404 36 97.2 32 .........T.......................... CTTTTCTTTTTGTAATTGTTCTGCCTTTTTTA 1472 36 100.0 32 .................................... CTTTATGCCGTTTTCATCCGGCTTGAACATTT 1540 36 100.0 32 .................................... CTTAAACCAACCGGGTATTCATACACAGCCAA 1608 36 100.0 31 .................................... CTTCTGCCGCTTTATTTCTGCCATATCGACG 1675 36 100.0 32 .................................... CTTCCTGCCAATTATCATACATAAGATTTTGC 1743 36 100.0 32 .................................... CTTGTATTCGTCGATGATGGAAACTCGAGCAT 1811 36 100.0 32 .................................... CTTTTAAAACCGCAAACCAGTTTGTATCCTAT 1879 36 97.2 0 .A.................................. | ========== ====== ====== ====== ==================================== ================================ ================== 23 36 99.5 31 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TCTTCTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //