Array 1 437394-438397 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIR01000002.1 Salmonella enterica subsp. enterica serovar Virchow strain 1178 NODE_2_length_674886_cov_51.7057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 437394 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 437455 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 437516 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 437577 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 437638 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 437699 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 437760 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 437821 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 437882 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 437943 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 438004 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 438065 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 438126 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 438187 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 438248 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 438309 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 438370 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 454667-457503 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIR01000002.1 Salmonella enterica subsp. enterica serovar Virchow strain 1178 NODE_2_length_674886_cov_51.7057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454667 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 454728 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 454789 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 454850 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 454911 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 454972 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 455033 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 455094 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 455155 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 455216 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 455277 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 455338 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 455399 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 455460 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 455521 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 455582 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 455643 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 455704 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 455765 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 455826 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 455887 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 455948 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 456009 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 456070 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 456131 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 456192 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 456253 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 456314 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 456375 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 456436 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 456497 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 456558 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 456619 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 456680 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 456742 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 456803 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 456864 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 456925 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 456986 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 457047 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 457108 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 457169 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 457230 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 457291 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 457352 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 457413 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 457474 29 93.1 0 A...........T................ | A [457500] ========== ====== ====== ====== ============================= ================================= ================== 47 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //