Array 1 159543-158172 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEBH01000003.1 Bifidobacterium rousetti strain RST9 NODE_3_length_289798_cov_93.716151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 159542 29 100.0 32 ............................. TCACCGGAGTGCCCGCCAGGGACCGTCACCCG 159481 29 100.0 30 ............................. GCCGGCGCGGTTGCAGTCGATGACGTGGAG AC [159452] 159420 29 100.0 32 ............................. ATGGGGCCGATAGCCATGATTCCTCCATGTTC 159359 29 100.0 32 ............................. ATGCTGCGCACGTCGAATTCGAGGTAGTTGTC 159298 29 100.0 32 ............................. GCCTCACATCCGTGCCACCCATCCTGCAGCCG 159237 29 100.0 31 ............................. GCAGCTGCGGTTTGGCGCCGGCCTCGCCGAC 159176 29 100.0 33 ............................. GCCGTCGAACACGGCCCAATCGGTCGGCTTGTC 159115 29 100.0 32 ............................. GCCACCGCCACCATCACCAAGGACGGCAACAC 159054 29 100.0 32 ............................. AGCGCGCTCGGCATCCACTCGCCATCCACCGT 158993 29 100.0 32 ............................. GCACGGCGTATGGCGGACTCGGCGGAGGCGGA 158932 29 100.0 32 ............................. GCCAAGCCCCACCCCTCCACCCCGAACCAGAC 158871 29 96.6 32 ............................T GGCTCGACCGAATCGGCATGCCCACCCTCCAA 158810 29 100.0 32 ............................. GTCAGGGTGCCGGTCTTCGGGTCGATCTGAGT 158749 29 100.0 32 ............................. GCCCACGCACCGTCACCATCGACGGCGTCACC 158688 29 96.6 32 ........T.................... AACGAGGCGATGCTCTGGCCGGTGGACGTGAA 158627 29 100.0 32 ............................. GCGTCGGATTCGATGTGGCTCAGCTCGCCGTA 158566 29 100.0 32 ............................. CGTTCGGCGACGCCTCCGACAGCGCGGGCCGC 158505 29 100.0 32 ............................. ATCGCGACTACCCCGGCGGCCGCGGTGAGCGC 158444 29 100.0 33 ............................. GCCGTGGACGTGTCAAGCGGCTCGCCGGCGGTG 158383 29 100.0 30 ............................. GCGTGGCGCTAACCTAGTTGCATGACACAA 158322 29 96.6 32 .............G............... GGGATTCTGGGCGCTACGATCGCTCGGAATCC 158261 29 96.6 32 ...T......................... GGCTTGGTCCATGCCACCACCCCACCGGTATC 158200 29 96.6 0 ...T......................... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTTCGCCCCGCACACGCGGGGATGATCCG # Left flank : CTGAGCATTGCGTATTGAATATTGAGTTGCCGGAGCTGACAGGAAACGACTGTGCGAATCGATTTTTTCAGTGAACAAGCAGTCGCCATTTCGGCATAAAATCAGACTGTTCGCCCCGCACACGCGGGGATGATCCGCTCCGGCGGCGTAGGCTTTGCGTTGGAGCATGGTTCGCCCCGCACACGCGGGGATGATCCGGTCGCGATCCGCCTCAAGGAGCGCCTGACCCTGTTCGCCCCGCACACGCGGGGATGATCCGTAGCCGCCGCCGTAGTACTGGCCGTTGCCGTCGTTCGCCCCGCACACGCGGGGATGATCCGACCTCGCAGGCCGACCTCAACGCCGCCAAGGCGTTCGCCCCGCACACGCGGGGATGATCCGTAGCCGCCGCCGTAGTACTGGCCGTTGCCGTCGTTCGCCCCGCACACGCNNNNNNNNNGTTCGCCCCGCACACGCGGGGATGATCCGTAGCCGCCGCCGTAGTACTGGCCGTTGCCGTC # Right flank : CCGCCGAAGCTTGGGCCGAAATGACGGCCGCACAGATCACCAACCCACAGGAGTGGAGACACATCCAGAAATGGTTCCCCCAATCGTCTAGACTAATCAGCAGCATTAGAGGATGCGTTAAATGGTTGACCCGCTTTTCAAGAAGTTCTGCGAGAACGACGAGGGCATATCCGTCGGGGAGCTTCTCGACACCTACGCCAGTGCGTTCAACGCACCTTTTTTCTCCGTGGAAGAGCAGGGGCCATTCATCGCCGACGACGAACTCCGACAGTGGCTTGGCTGGTGCCTCTTCTACGGCAAGCCTCGTGACGAGTACGTTCGCCCCGCGCGCACGGGGATGATCCTGCTGGTTGTAGCCTTCGAAGCCTCTTTGATGAGGGGCTGTCAGCGAAGCTGACTGTGGAGGGTGCGAAGGCAGAGACTTGGAGACCTACAGACCTAGGTCCGCCGTGTCAGGGAATGGCCCTGCCATTCGATGCCGAACGAAGCAGCCGGCGTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCCCGCACACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36253-36993 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEBH01000014.1 Bifidobacterium rousetti strain RST9 NODE_14_length_59271_cov_68.496469, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 36253 30 83.3 31 ...C.........A...A..........TC CCCGTGGGCGCTGCTTGCATCAGTGCTCATG 36314 30 100.0 31 .............................. AGGTACGACTCACGGTCGAAGCCGATTCCAT 36375 30 93.3 31 ........T...................A. CCAACTCGTCCTCGTCCCAGTCAATGTGCAT 36436 30 83.3 30 G.T.......T.................AA ATGTGCATGAAATGGAGGTGTGACATGAGT 36496 30 86.7 31 ........T...T...............GT GGTGTCCAGAGACCCCACTTCCAACACCGTA 36557 30 83.3 31 .T......T.T.................AA GTCCAACGAAAGCGCCTTCGCTCACGATTAC 36618 30 96.7 31 .T............................ TCTCTTTCGCATCGACATGTGCAAGCCGTCT 36679 30 90.0 29 ..........T.................GT TACGATGAGCAGTCTGCTGCAGACGCGTC 36738 30 90.0 31 ..........T.T...............A. GCTTTCACCGTACTTGTTGTTACTTCGCATC 36799 30 90.0 31 .................A.........A.C TGGGATGCCTCATCCGCTACCGCAAAACGGG 36860 30 86.7 8 .T......T...T...............G. AAAGTTAG Deletion [36900] 36898 29 70.0 37 .TT....TT..GA..A........-....C GGATGGAGACAACGAAAACACCGAAATGGAAAGTTAG 36964 30 76.7 0 .TG.....T....A.......G...G..A. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 86.9 29 ACCTTCCCCGCACGCGCGGGGATAGACCCG # Left flank : ATCATCGCCGCCGCCACCGGCGAAGGACGACAACTCTGGCGCCTCGAACACAACCGCATCTACCTCGCGGCCAACACCATCGACAACACCCAACTCCAAACCAGATTCGGCCGCTGCACCATCGAAACCACCGACTACGACAACCTTCTCAACACCCTTCAAACCGGCCAACACTACCGGTGGGCCATCCAAGCCAACCCCACCACCACCAAAAGCCATGACCCGCACAAAAACCGAATCCCCCTCAAAACCAACCCCGAACGCCTCGCATGGATTCACCGGCAAATCACTAAAGCCGGATGCACCCCCATCACCACAACCATCACCACCGCCCACGCCGAACGATTCAAACGAGGAACAGACACCATCACCATCCAAAACGTCTCCTACCACGGAGAACTCGAAATCAACAACCCCGACCAACTCCGCCAAGCCCTCACCCAAGGACTCGGCCCAGGCAAAGGATACGGACTCGGCATGCTCCTCCTCAACTAAACCCA # Right flank : GCCTGCGGGTTTTCTTCCTTTCTTCCCAATATCGGGGGAGGGGAGGGTGTGAAGGATAGCGGCGGCGCACGAAGCGACCGTCAAACGCATTACTACTGGCGAGGTGGAATCCCATGGACGATAACGGCAAACGCAAGGGCGCCATCCTGATCGGAGCGTGCGTGTGCACGATCCTGCTGCTCCTGCTCGAAATCCGGGTCACGCCCCAGTTCACCGGCCTGTGGGCCGCGCTGATCGTCCTGCTCGTCGCACTGGCAGGCATCGCGGCATGGCTCATGACCCGACGCCCCGACGACCGGTGACCATACGGGAATCCCACGTTTCCCGCTCACGATGATTGGAGGAACAAGCCGACCATGAACGAAGACAACCAGCCACGCACCGTGCTCAGCTCGGACGCCGCGCAACTCATCCGCGCCACGGACGCGGCCACCACGCCCCTGACCCTGGACCTGCCCAAGGCCGGGTTCGGCGGGTACGATCGCAGGGCCGTCGAGGAA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:-1.5, 6:0.25, 7:-0.19, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTTCCCCGCACGCGCGGGGATAGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51743-56328 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEBH01000014.1 Bifidobacterium rousetti strain RST9 NODE_14_length_59271_cov_68.496469, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================================================== ================== 51743 29 100.0 32 ............................. TGGCTGGTCAGGTCGTTCAGCAGGAACGCGAA 51804 29 100.0 32 ............................. GCGCTTATTGAGGTTCGTGGTGCTGTCGGCGA 51865 29 100.0 32 ............................. TGAGGATATCGCGGCACCATCAGGCCGATTAC 51926 29 100.0 32 ............................. GATGTTGCCGGAGTCGTGCAATGGCAGGTGCG 51987 29 100.0 32 ............................. CGTGGTCCGATGAACGGCGGGTTGCCCATCAC 52048 29 100.0 32 ............................. GAAGTCGACCGTTCGGCAACCGCCGAGCGACG 52109 29 100.0 32 ............................. TGGACCTTCGTATCGCCGATGACTCGGGGCCT 52170 29 100.0 32 ............................. ACCTATTTGCCACCCCGATTGCGGTGTTTACC 52231 29 100.0 32 ............................. GGCGCGTGGATGGCGGTCGGTCTGGACGGACG 52292 29 100.0 32 ............................. GCCTGAGAGCGCCTGAGAGCGCCTGAGAGCGC 52353 29 100.0 32 ............................. GCCGAGCGCACGGACGGCGCGTGGATGGCGGT 52414 29 100.0 32 ............................. AATCGCCATTCCCCAGTACTGACCCGGTTGGC 52475 29 100.0 32 ............................. ATTCGAACAGGCCGGCCCAGAGGAGGCTGTCG 52536 29 100.0 32 ............................. CATGTCGCGTTCCCGCTCGGCCCGCTCGGCCG 52597 29 100.0 32 ............................. ACGCCACTCAGTGTCTCGCCGCGCTGGACGAC 52658 29 100.0 32 ............................. GGCGATCACACCCAGCAGGACCGAGACACCGA 52719 29 100.0 32 ............................. GATATAGGAGAGTGCGTCGGTCGTCATGCGCC 52780 29 100.0 32 ............................. AGCTTCTGCGAAGTAGCAGTAGATATGAAAAC 52841 29 100.0 32 ............................. GCACAGGCGGCGCTGGCCGTCCGGGCACGGCA 52902 29 100.0 32 ............................. ACCGGTGCGCGCATGCACGCGGTTCACGAACA 52963 29 100.0 32 ............................. GGGCGCGTGGCGTCGGCTGGCTGTCGGGGTCG 53024 29 100.0 31 ............................. TTCTGAGGGCCGATGTCGCCCGGATACCAGA 53084 29 96.6 32 ............................T TTCCCATGAGAGGGGTAGGGGAGAGTTACTGG 53145 29 100.0 32 ............................. GTACCCTGTCCGCCAAGTTCGGCATACAGCGC 53206 29 100.0 32 ............................. GCGCGGGCGTCCCGTTCGTGCTTGCTGGTGGT 53267 29 100.0 32 ............................. TGAGAACACCACCGGCGTATCGTCCTCTCGGA 53328 29 100.0 32 ............................. CCACCGCATGATCCAGCCGAACAGCCCGAAAA 53389 29 96.6 32 ...........G................. TGGTTCACATGGTTCACTGGTTCACATGGTTC 53450 29 100.0 32 ............................. CCCGGTGGTGCCGGCTGGGCCGGCTCCGGGGG 53511 29 100.0 32 ............................. GACGTGGTGACGGCGTTCCGCAGCGTCATGGT 53572 29 100.0 32 ............................. GGCTAAGCAGCTCCGCCGGAAACGGAGCTGCG 53633 29 100.0 32 ............................. CAGACAGAAACGCCAGAGGTGCCCAGTTCCAG 53694 29 100.0 32 ............................. ATCGGCCGGCGTATCTCGTGGCATGACGCGTG 53755 29 100.0 32 ............................. GGCGGCTACCTCAACCAGGACGGCGTGACCAA 53816 29 100.0 32 ............................. CCGTGTGTGAACCAGCTGTGTGGGGGTGTGTG 53877 29 100.0 32 ............................. CGGCGACTCCGCGGCACCACGGCTGGCACCGC 53938 29 100.0 32 ............................. GAAGCGCGCGAACGCGATACGGACGTGGAAAT 53999 29 100.0 32 ............................. TGGTGCGGGCCCAAAAGCGATCTTCGAGCGGC 54060 29 100.0 32 ............................. TACTTTCGGTGATCGTTGGGTTGGGTAGGGAG 54121 29 100.0 32 ............................. TGGCCAGCGGCCAGCGTGGTAGTGATCGTAGT 54182 29 96.6 32 ............................G GGTACGCGCGGTGCGGCTGGTACGGCGACGCG 54243 29 100.0 32 ............................. GGTGGTATCGCGCAGGTACGGGTATCGTACGA 54304 29 100.0 32 ............................. TAGTTAATGATGCCTGTGGTCTAGGTTCTCTT 54365 29 100.0 32 ............................. GGTTTGGTATTTGCCCCGGTGTGGGGTGTGTG 54426 29 100.0 32 ............................. TGCGCTGGGTGGTATCACGCAAACCTGGTCTG 54487 29 100.0 32 ............................. CCACTCCCTACGCGCGCGTAGGGAGTGGTAGA 54548 29 100.0 32 ............................. GCCATGATAGCCGGCAATTGCGACGCTACCCA 54609 29 100.0 32 ............................. CCCCTATAGGCTCGCACGCCAAACGCCTTATC 54670 29 100.0 32 ............................. GCGGGTCAGGCCGGCGGGCGCTCCATATCCGA 54731 29 100.0 32 ............................. GAGATCACGGAGACGCGCCTCGCCCTAGGCAT 54792 29 100.0 32 ............................. ATGATCGACAAGCACCACATCAGCGAGTAACC 54853 29 100.0 32 ............................. GCGCTCCCGATCGTCCAGCAACTCGCCGACGG 54914 29 100.0 32 ............................. GGGTATCCAGATCATCGTCAAATTGGCGATGG 54975 29 96.6 32 ............................T CGTTTCTGCAATCAAGTCGGGATGTGCTATAA 55036 29 100.0 32 ............................. TACGATGCATGCGGCGATGTCGGCGGGGGTTG 55097 29 100.0 32 ............................. CCGCCTTCACCAACGCCCCCTGCAACGCCATC 55158 29 100.0 32 ............................. CAAACCCATCCGCGCCGACATCATGGTAGGGG 55219 29 100.0 32 ............................. CGGGCGCGCACCGGGGTATCGCGTACGAGCGT 55280 29 100.0 32 ............................. GGTCACCTCACCCGGCAGACCATAGTGCATAG 55341 29 100.0 32 ............................. GGGCTGAGAAACCCGAACCGCATCTACCCCGG 55402 29 100.0 32 ............................. GCCGTGTGCGGCGGCAGGCAGAGTCGCGTAAG 55463 29 96.6 32 ............................T TCTGCGTACGTGGGGCTTGATCGCATCCGCGT 55524 29 100.0 32 ............................. GTGCGGATCCAGTTGCTGTCGCCCCATGCGCG 55585 29 96.6 33 ............................T CCCCATGGGCGTGCAGATGGTCACGACGCTCGG 55647 29 100.0 32 ............................. ATGCTCTGGAGCGTGGGGTCCGGCGTGTGTTG 55708 29 100.0 32 ............................. GAGTTTGACTACAACGCGTGAGCTCAATCGTC 55769 29 100.0 32 ............................. TTCTACCGGGTGGGCGTGGACTCCGCGTCGGC 55830 29 100.0 32 ............................. TCCCGCGCCGAAACAGCCCTTAGCGTGAACAC 55891 29 100.0 197 ............................. GACTGGTTCATGCTATCGCATCGGCTATTATGGGAAGTGCGGAATGACGGCAGTATCACCCATCCGGTTCTAGGCGGGTGTACAACGACTTTTCGGATGGTGCCGATTCCGTGGGGTGCTTCCAGATGCATCCCCCGTAAACGTGGAGGCCCCGACGTGCTGAGCGTCGGGGCCTTTTCGCATTCCTGCTAGTGGAG 56117 29 100.0 32 ............................. CCGCGACCCTCGTCCTTCCTCTCCGTTCAGCG 56178 29 100.0 32 ............................. TGGACCAGGCCAGCCGGGAACGTGCGCTGAAA 56239 29 100.0 32 ............................. CCTACAAAAACAACTCGGCCACACCACCGCCA 56300 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================================================================================================================================================================================== ================== 73 29 99.7 34 GAACGCCCCGCAGGTGCGGGGATGAAGCC # Left flank : GCTTGATATCGACGACGAGACCATGCACATATGGGCGGGACGAGGCGTAATGCTCGAGCAAAGTGTGAACCGGTCACCGGAGTGGAAGCGATGATCATCATCGTGCTCACACTCGCGCCAGCCAGACTACGTGGAGACCTTACAAGATGGCTCATGGAAATAACACCATGCGTATACGTAGGCAAGGTATCAGCCCGTGTCAGAGACCGACTCTGGGAACGTATCACCGATGAAATTGGCGACGGAAAAGCTGTGATGATTCATCCAAGTAACAACGAACAAGGGTATAAAATCAAAACGTACAACAGCGAATGGAGTACACGAGACTACGACGGGTTGACACTCATGGTAAAACCCCGCAGAATAGAAAACAAGGAGGAGGGGAGGACAGGGTGGAGCGACGCAGCACGATGGAGACGATTCCTGAGTCGGTAAGAGACATTGTCAAAATCGGTTTTTCTCAGCTCGTTGAAAGCATCAAAACCCTTTGATTCCCGTCT # Right flank : CGATCACCACTCGAAAGGGAAAAGCTAACATCATGACCCCTGCAGAATTCAAATCGATCCGTGAGCATATGGGGCTTCCGCACCCGTGGCTGGCCGCCCTCTGGCAAGTCACCGAGCTCACCGTCAAAAGGTACGAAAGAAAGGGCGTGCATGTACCCCCCGAGTATGCGGAGAGACTGCTCAGTCTTCTGCGTGGATACCTGCATATGGTGGAGAAGATGCATGCAAAGGCGATCGCTGACGATGGGATCATTCGAGTGTCCTTCCGAGATCCGATCGGACACCCCGTTCGTCCCTCAATTGACACGGGTACCATCGACTACCCCGCATCATACTGGCGAGCCGTTGCATGCGACACCATGCTACTTGGCGGAAACATCCGCATCGTCTATGCCGGGGACGAGGATAGCGCGGCTGATAACAGAATGCCCCCGAAGATGTGGGAATGAAACAGAAAGGCCCCGACATGTCGGGGCCTCACGCTAACGAGGGGCGCTCTC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACGCCCCGCAGGTGCGGGGATGAAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //