Array 1 260789-261726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKK010000001.1 Listeria marthii strain FSL W9-0526 NODE_1_length_926626_cov_56.466309, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 260789 29 100.0 35 ............................. ATCACCGCGGCCGCATGCGTTTGCGTAAATACTTG 260853 29 100.0 35 ............................. GCCTTATACATGCGTGTAGGTGTTGTCTTAAAGTC 260917 29 100.0 37 ............................. TCGTCTGTTTTCATTTTCTCAATTAACGACAGTGCCG 260983 29 100.0 34 ............................. AAGACAAACTTACCACAATGCTGACATAAGCCAC 261046 29 100.0 36 ............................. TAAATCTGGTCGTGTATCAATTTTCTTTTCTCGTCG 261111 29 100.0 37 ............................. GTGGTTATTGTTTGAACAACTTGCTTTCCTACGCGAC 261177 29 100.0 36 ............................. AGGCATGGCCGAAGAGGTGAAAAAATCCGTAGATGA 261242 29 100.0 34 ............................. CTTGGGATAAAGAAATCATCATAGCTCCCCCACG 261305 29 96.6 38 .........................G... TTCTCAGACGAACCAAAACCTTCGGAGTGCGAAGTTGT 261372 29 96.6 37 ..............A.............. GAAACCGCAGGACAGGCCCAGTTTGCGCGATTTGTGT 261438 29 96.6 35 .......T..................... AGAAGTTCTTGAATGTAACGTAAATCACAACCATT 261502 29 89.7 36 .......T........A.A.......... TACGATGACATCGCAACTTACGAGGGCACATTGACA 261567 29 93.1 39 ......A.......A.............. AATAGACCTAAGTGTGATATGATTTTTTTGAGGGGAAAA 261635 29 93.1 33 ............C...A............ CCTGCCATCAGTTGTTTTATTCCTTGCGATTTC 261697 29 79.3 0 AC.....T......A.A......A..... | A [261718] ========== ====== ====== ====== ============================= ======================================= ================== 15 29 96.3 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAATGCAACCGAACGTTTACAAAACTCCAATATCAAAGAAATCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAATCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAGAATCGCTCGTTGCATCCGTTGTTTTAAGGGATAAATCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTGCGTTTGGTTATCTGTCGACCTTGAGTAGTGTGAAAAAGGCTGGGTATCGACAGAAAGGTGAGAATGGTTGGGGTGAGGGGAGTTTGGTGGTTTTTGTTTTTGAAAACTATGTAGAGAAGGGTGGATTTTCGTTAGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TGAGATTTGACTTTTAAAATCCTTACTCATCTTCCAATCCAAACCCGACTCAACAAGATTCGGGTTTATTTTTATCCCCACGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATATATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGGAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 276506-278611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKK010000001.1 Listeria marthii strain FSL W9-0526 NODE_1_length_926626_cov_56.466309, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 276506 29 100.0 34 ............................. TTCAACCAGACGGACGGTAATACATCAATTTCGG 276569 29 100.0 34 ............................. GTCGACGATGAAAAAACATTGAAATACTTATCTG 276632 29 100.0 36 ............................. GTAAAAGTGCATAGCAACGGATACGCAAACACTATC 276697 29 100.0 36 ............................. AGAATAATCCGTATAGTATTTAACTTCCTGGTTTTT 276762 29 100.0 36 ............................. AGCGAACATAAATTCTATATTTTTTTTCGCCGCCGC 276827 29 100.0 35 ............................. TAACGAAATTGATGCGTTTGAAAACTATATTCGAA 276891 29 100.0 35 ............................. TACGTCAAAAGCTTTGATGAACATGTAGGGTTAGA 276955 29 100.0 37 ............................. GAGGACAGCTCGTTCAGCGTTGAAGTGGACGAAGAAG 277021 29 100.0 34 ............................. TTTCAAGCCATATTAGTTGTGCTAGGGTTGTTAC 277084 29 100.0 36 ............................. TCTTGCGTGATAGCTGTACCAAACGAACCACTCACG 277149 29 100.0 36 ............................. ATACTTATTATGTTCATATACAAGAATTGATGTCCC 277214 29 100.0 36 ............................. AAGGGACGCAATGTTCTTTTAGATCTACCACGAGGC 277279 29 100.0 37 ............................. CCTACAGTTTTACTCGTATTTTGTTCGAAATCCATGT 277345 29 100.0 36 ............................. AACAAAGATACGCATTTTGTTCGATGCAATGTAAGT 277410 29 100.0 38 ............................. GAATTTATAAATACTCGTTCGATGGTTGTGGCACTTAG 277477 29 100.0 36 ............................. ATTTTCCATAACCATCTCTTAAAATCATTTTTCATC 277542 29 100.0 35 ............................. TTTCCTGTTTTCTCTTGATCCTCGATAATATTTTG 277606 29 100.0 36 ............................. ATCGTTTGCTTTTACCGCATCAAATGCCCACGCTTC 277671 29 100.0 38 ............................. AAAGCTCTATCGTTTTGAGGTTGCATCACTTTGTTGTA 277738 29 100.0 35 ............................. ATTAAATGAGGTGAGTTCAAGAAGGAGGTAACTAT 277802 29 100.0 36 ............................. ACTTTTCTACTTTCACACCATTTTTGGTTCCATAAC 277867 29 100.0 35 ............................. GCGATTTCATCAGTTGCATTATCGTGCGTGTGATC 277931 29 96.6 38 .................C........... TCTGTTACGCTCTTTATCATAACTAACACCAGTTACAC 277998 29 100.0 36 ............................. GTTTTCTGGTAGCGTATTCCGCTTCTTTTTTATTCC 278063 29 100.0 38 ............................. ATGGAAATCGTCCATAAAACTTGGGGGACGGGCTTCTA 278130 29 100.0 35 ............................. AAGTTTAGGAACTCGACTTTCTTTAGTTCCATTTC 278194 29 100.0 34 ............................. TTGTTTGAGCAAAAGAAATAGCAGCCGATTTAGC 278257 29 100.0 36 ............................. CACACTACCAAATTATTTAGCAACGATGCTGAATCT 278322 29 100.0 36 ............................. CATATTCTTGTGTTATTTTTTTCATCCCTCTTCCTC 278387 29 100.0 37 ............................. TAACTTCTATTCTCTTACCGTTTTTTTCGTTAACACC 278453 29 100.0 36 ............................. TTGATCAAAGAATCCTTGTATCTTCTAAAAGCATTA 278518 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 278582 29 86.2 0 ...............C......CA....C | C [278604] ========== ====== ====== ====== ============================= ====================================== ================== 33 29 99.5 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATATATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCAGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGACTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACGAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCCCCAGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //