Array 1 49-324 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRE01000197.1 Escherichia sp. MOD1-EC7003 MOD1-EC7003_198_length_370_cov_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 89.7 32 .GA.........T................ ATGAATGCGGGGCAAAATTGGTCGGCGTCGGT T,AG [57,59] 113 29 100.0 32 ............................. GGGTTCAGTTAATGCCGAACAGTGACTTTGAT 174 29 100.0 32 ............................. TGGCTGGGGCAAACACAAATTGTTGGCGCGGT 235 29 96.6 32 ............................T CGCGCAGGATCTCGACAAACAGCAGGGTCGAC 296 29 75.9 0 ..................CT..GGG.T.C | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAGATCACAAAACTCTATGCCTGTCTTTTTTTACCCGCCCATTACTGGG # Right flank : CCATAAATCAGCGCTAATAAACCAACACCATATTCTGGTAGGTTTT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.10,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-323 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRE01000025.1 Escherichia sp. MOD1-EC7003 MOD1-EC7003_25_length_84883_cov_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47 29 93.1 32 .G..........C................ ACTTACGCGGCTGTAATGACTCCCACAAAGAG A,T,AG [50,55,57] 112 29 100.0 32 ............................. GTGACCGTTCAACATTCCTGAGTCAGTACAAC 173 29 96.6 32 ............C................ TGGATGGCGACCGCATGGCCGGGCGGAACGTA 234 29 93.1 32 ............C..........G..... TACCGCGCAAGAAGCGCACGCCCTTTGCCGGA 295 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : AGATCACAAAACTCTATGCCTGTCTTTTTTTACCCGCCCATTACTGG # Right flank : GGACGCACTGGATGCGATGATGGATATCACTGGGGGAGCTTCCATTATCAAACTCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACTGCAGCGACGTTCTGTTCTTCCTGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACATCATGCCAGCTAGTTCCCTCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCTTTATTTCCCAGACTCCAGTTTGTTGCTTCTACTGAAAGTACGGCAATACCGGCTTTGTCGAAAACCTCGGCGTCATTACAACACCCGGTGCCTTTGGGATAATTTTTATTTAAGCCCGGATTGGTCGTTGCGGCAATTCCATGACTGCGGGCAATCGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25541-25389 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRE01000093.1 Escherichia sp. MOD1-EC7003 MOD1-EC7003_93_length_25793_cov_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25540 29 79.3 32 TCCC..AG..................... ACAGGCGCAAGGTCAGCCAGTTTCAGCATTCG 25479 29 100.0 33 ............................. TGAGGTGGCAAAAATATCAGGTGTGTACGCCAA 25417 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 93.1 33 GAGTTCCCCGCGTTAGCGGGGATAAACCG # Left flank : AGTCTACTGGCGACGCTGAGTACAATTGTACTGTGTCTTATTGGCTATCATGCTGAAAACAAAGGATTACATCTGAGATATCAGGCCAACAGCATTAAAACACGGCGGGTAATCTCGTATCTGACATTAGCGGAGAATGTCTTACGACACTCCCCGCTAATTTTAAGACGAACAGTGCTAAGCACAGTTCTTAATCATCTCGCCAAAACCTACCAGAATATGGTGTTGGTTTATTAGCGCTGATTTATGGGG # Right flank : AGTTCGCCCACGAACGATCGGCGCAGTGGGGGGATAACCATTCAGCTATGTTCAGGCTGGACAGTTTCCCGCCCGGTCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCCGCATTCCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAGGATCACATCAGTATGTTTGGTTAGGTCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCAACCGCCGTATTAATGGCTGCCCCCAGACTTGCGCAGCCATTAATGACGTTACGGCGTGCCGGAAGGTTGAATACATCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCACCGCCAGTAATGATCACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTATTCTTCAGCGT # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //