Array 1 101928-101227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHBR010000004.1 Escherichia coli strain C3F 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101927 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 101866 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 101805 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 101744 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 101683 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 101622 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 101561 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 101500 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 101439 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 101377 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 101316 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 101255 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119044-117429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHBR010000004.1 Escherichia coli strain C3F 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119043 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 118982 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 118921 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 118860 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 118799 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 118738 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 118677 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 118616 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 118555 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 118494 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 118433 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 118372 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 118311 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 118250 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 118189 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 118128 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 118067 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 118006 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 117945 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 117884 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 117823 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 117762 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 117701 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 117640 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 117579 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 117518 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 117457 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //