Array 1 1656-1260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBV010000012.1 Lactiplantibacillus pentosus strain 7.8.2 assembly_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1655 28 100.0 33 ............................ CGAATAACAATCCCGCGCCAAAAAGGAACGCTC 1594 28 100.0 33 ............................ TGTTGTCGGCGGATGTTCCGCCGATTCGTGCAT 1533 28 100.0 33 ............................ TTACATTGGACTTCGCATCGTTGGTCTTGTCAT 1472 28 92.9 33 ..........C.......A......... TGGTTTAAAGATTCGAACGGAAATTTAGACTTT 1411 28 89.3 34 ........T.C..........A...... TGGCTTTTGTCAGCGCTTCTTCGCAGAACACTTG 1349 28 92.9 34 ..........C......A.......... CCTATTTCCACAATCAAATTCATCTACTAGATGA 1287 28 92.9 0 ..........C....T............ | ========== ====== ====== ====== ============================ ================================== ================== 7 28 95.4 34 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TCGCTTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACTCGAACAGACATTGAATTTTTGGCAAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGTGAACCGCGCCGCAGAAACAGATTTAACGGATGATTTTATAGCCATTTTTGGCTTTATCAGTATTGTATGACCATTTAGACCGGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTTGAGCGATTCGCGAAATCTTGAGAAGCAATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACTTCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTAATGTAAAAACTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TAAGTAAAACATAAAACATTATTATCTTAGACCACTTAAATCTGCTTAAATCTGCGCAGGTGTCCTACAACAAATCAGCTGGTTCCGGTTAAAATTAATGTTCATGCAGCAACCACCCCTCTCCAACACACACAGAATATTCAGAAAGTACGGCTCTTGTCGTCCCCACCGCTCACAGTCATTCGCAAGCTCGGCGCAAGGTAAATTAAATTAGAATCTAGAGCAAAAAAAGCCGCCATATCCGAAGATATGACGACTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 170697-170068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBV010000005.1 Lactiplantibacillus pentosus strain 7.8.2 assembly_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 170696 36 100.0 30 .................................... AAAATCATTTGTAAAGTTCAATGGCTTGTT 170630 36 100.0 30 .................................... GACGCTAACGATCGCCCAACTAAGGTATGG 170564 36 100.0 30 .................................... TTACCCGCTTGCATGGTACAATAGGAACAT 170498 36 100.0 30 .................................... GGCAGCGGACGGATGGTCTGCACCTGCGCT 170432 36 100.0 29 .................................... GGAACGATGGGGAAATAAAGGTTCGCGCC 170367 36 100.0 30 .................................... TTTAAATTCTCCTTTATCTCTTATCGTTTT 170301 36 100.0 30 .................................... TTGCTGTTAAGCTAACTGGCGACATGAGCA 170235 36 100.0 30 .................................... TTCCCATATTTCCGTTCAAACAACGTAACT 170169 36 97.2 30 ...........C........................ CGAGCCAAACAAAATTTCGATGTTCAGCAA 170103 36 86.1 0 ...........C............T..AG.....G. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.3 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCCGTCTTGGATCAAAGCCGGGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTAGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGCTTTTGAACAGCAAGTGGCAGATTTAGGCACTACGGTTATTGTCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : ACTTTTCTTAGTATGTATTTGTACGCGCCTAGTCAAAGAAAGTCCGTTGTTAGATCTATATTTTAATCCTAGGGATATTTGACCGGGGGTCGCTAAGGGCTTAGCTCATACGAGTAAAATCAGATTGTCACTAGGTGGACGATAAATTCTTGCTTCGAGAAAAAGGTTTGGCATCTTTCTCGATAATCGATGTCTTCTGCAATGACATCTATGCTTAGGCGCATACAGGGAGATGTTCACAATGACGGTAAAAGTACAAAAACAAGGTCATTCACTAATGATTCCGATACCGGCAAACTTCCATGTTAAAGATAACGCGGAATATCAACCGGTTATGGATGACGACACCGGAATCTTATCGTTTATCCCAGTGCATGAAAATATCTTTGAACAAAATCCTGACTATGACTTCCAAACTGCGCTCAAAGAAATGAGTTTACCCGATAATGGGGAACTGGTTGATAAAGAAAACGTTTGGGAATGAATCAGAAGTAGCATCG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 74210-73223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBV010000013.1 Lactiplantibacillus pentosus strain 7.8.2 assembly_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 74209 28 100.0 33 ............................ TGGTTACGATGATTTTATTACGAAATTAACGGC 74148 28 100.0 33 ............................ CGAATCGCGTCATGCATTTGACTAACTACGATA 74087 28 100.0 33 ............................ CATTCTTAAACAAATAACCGTTAGGAACTGCTT 74026 28 100.0 33 ............................ TAACGTCGGTGTCGACAAAGCTGAACGCTTGAC 73965 28 100.0 33 ............................ CTGGCTCAATGATTATTAAATTCAGGCATTACA 73904 28 100.0 34 ............................ CTTTTTGGCAAAACAAAAACCCACCATATCAATG 73842 28 100.0 33 ............................ CATGTGGTTGGCTGTCTCAAAAGATAAGTATTT 73781 28 100.0 33 ............................ TGTTCGAAACGGCATGAGTTTGACTGGATTAGG 73720 28 100.0 33 ............................ TAAGGGCTTAACGGGTTTTGCAGATTCTCAATC 73659 28 100.0 33 ............................ CAAGGAGCGCATGGAGTGGATAAAGTTTTTTAC 73598 27 92.9 137 ..A..................-...... TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAACAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 73434 28 85.7 33 ..A.......T.C..A............ TCAGCTTCAGCGATTAGTGATTCAGAAGATTTG 73373 28 85.7 33 ..A.......T.C..A............ CTCGGTACCATCCGTTACATCAATGACGACAGG 73312 28 85.7 34 ..A.......T.C..A............ CCTCTAATTCATTGTTTACAATCAGCCACTCATA 73250 28 85.7 0 ..A.......T...............TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 15 28 95.7 41 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTTGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAGGCTTCACAATTATTAAGCGCTTACATTTTATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGAGATCATCGACTTTCATCCGTATATTTTCGTCAGAACCCTAAACTGCTTGTAAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAGTGTTTGAATATACATCTATTTTCGGAAGGACTTTGATGGATTTTTGATAAATTATGACGACTAGTTTGTGTCAAGACAGTCTGATATGTCCAGTCTTGGAGTTTCCCTATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGACAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATATCCCGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTGAAAATTAGCAGAATTATCTGGGAAAACTCAGTTTTTGATACAGCAAAAATGCGCGTGTTTACAACATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATAGAGAAGAACATTCTGAATTTATTTTTGTAAATTCACGGCAAACTTTGAATAAAGTAAAGGTTGTACCGTATTTAGAGAAAGTACTGTTGCAGTTTCTATAGATTAGGGAGGGTTGTACGGTGATAACTATACTTGAATACGCATAGAAAGAATTTATAA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : CTATTCCCCGTGCATACGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 77283-76828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBV010000013.1 Lactiplantibacillus pentosus strain 7.8.2 assembly_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77282 28 100.0 33 ............................ TGGATATTGGATTGCTACTGGTACTAGCGGCGA 77221 28 100.0 33 ............................ TGGATATTGGATTGCTACTGGTACTAGCGGCGA 77160 28 96.4 33 ..........................T. CTGCGTTGCCATTTTGGTGAAGTTTGCACTATT 77099 28 96.4 33 .................A.......... CAAAGTCGCTGATCGGTATGATACCAAAGCACT 77038 28 100.0 33 ............................ CGGGAGAACAAGCTTGGTATTACAAGAACATCG 76977 28 92.9 33 ..A............A............ TTAATGATGCGATATACGGGCAGCTTCACATTC 76916 28 89.3 33 ........T.......T.A......... TTAGTGACCGATTGACATTCCTATATTTGGAAC 76855 27 82.1 0 ..A............A......C-...T | G [76830] ========== ====== ====== ====== ============================ ================================= ================== 8 28 94.6 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TATTAGACTGCCGGGGTATTTATAATTCATTGCACACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATTGATTTTTTAGAATTCTGGAGATAGGTCAAACATTCACGCCTATTAAACGTGGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGCTGATTTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTGCTATTGTCTCTAACACATACAGGACTATTTCGGCATTTATACAGAGCGATGAACAGCATTATTTCATCAACAGGGCAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTATGAATCAAACTTCCATTACACAAATAGTGTATCTCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTACTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTTTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATGGGTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCATT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //