Array 1 150100-148229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000015.1 Nostoc sp. FACHB-190 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 150099 37 100.0 34 ..................................... TTCCCCTGGGACTTTTGGTCTAGGCAAGGGTGGC 150028 37 100.0 34 ..................................... AGTAACTTAAAAATAAAAGAAATCACCGAATACA 149957 37 100.0 35 ..................................... CGACGGCATGGAAAACCTGCCTCAATGGATTAGGT 149885 37 100.0 41 ..................................... CCATGTTGTTCCTTTTATAGAGGGACTCCACTGCTCTCCAA 149807 37 100.0 36 ..................................... CCATCACATCGTAAATAGTGCCAGGGCGATCGCGGA 149734 37 100.0 40 ..................................... TTCATGGAGAGATTAGCAGCGATCGCCTAAGTACGCTCTA 149657 37 100.0 35 ..................................... CTAAACATGCTTCTTTAGTTGAATGGCAGCAGGCG 149585 37 100.0 36 ..................................... GTCCGACATCATTCTGACTATTTTTCTGATAATTAC 149512 37 100.0 36 ..................................... TAAAACCTCACGCGATCGCCTGTTCTTGTACCAAAA 149439 37 100.0 42 ..................................... ATTAAGTCATTTTCCCAGGAATCAATTTATAGAATTTAACAA 149360 37 100.0 37 ..................................... ATAAGTATCTTGCAGAACTTCGATGATAGCCGAATCA 149286 37 100.0 37 ..................................... TTTAATATCGCGCGATGAATTTAAAGAAGAACTCATC 149212 37 100.0 33 ..................................... ATTTCTGCGACTGTGGCAATACGCCGCGATGCA 149142 37 100.0 42 ..................................... TAGAGAGCGTGCAGAATATGACCCCGATACTAGCACACGCAC 149063 37 100.0 36 ..................................... CTATCCTTTCCTCATCCAAACCCTAATGCTTGTGGA 148990 37 100.0 34 ..................................... TATCCACATAGTGATAAAGCTATAGATTTGTGTT 148919 37 100.0 36 ..................................... CAGTCATAATTTAGGTTCGAGCTAAAAATTCCTGCT 148846 37 100.0 42 ..................................... TAATTGATGCTAGTAAAATCCTGGTTACAGGTGCGATCGATA 148767 37 100.0 34 ..................................... CTTCTTGACCACCATGACCGTAGGTATAGCCTTC 148696 37 100.0 34 ..................................... GTATCTTGAACCAAGGCTGAAGATGCAAGTTTAC 148625 37 100.0 33 ..................................... GATTTCATGGAAGCAATGCGCTCCAGCACAAAC 148555 37 100.0 35 ..................................... TAAACAAACCTGAAGTGTTTCGCTTAACCATTGCC 148483 37 100.0 35 ..................................... TCAAGAGCAATCCTATGCTCTCCTTAGTAAAACAG 148411 37 100.0 35 ..................................... TTAAAGATATATCCGAAGAAGTGCTGAGTTATAAA 148339 37 94.6 37 .........A.....................A..... GTCTTGACCGCGATCGCAAAATACATCATCTTCAAAC 148265 37 89.2 0 .C.......T.......C..............A.... | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 99.4 36 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : ATGGACTGTTTCTGTGGTGGCTTTTAAGATGTGATGCGTCATGAATAGAGGAATCAAGTTTGATTTCTCAATTTACTTGTGTATGCAGGGCGTAGGGAATAGGAAGTGGGGAGAAAATTATTTACAAAAATTTTTCTACTTACGCTTGACAGGTATACCGCCAACCCCAATGAAGTCATGAGTATTTTAATCCGCCAAATCTTGATGTAATATCTAGATACCCGACTTTTTCAAAAAGTCGGGTATCTAAACAGCACGACAAAATTGGTCAAAATGCGCGGATGGATAGGTGTACAAAATCGCCCTTAAGCAAGAATGGCTGGATTCCTTGGAGGGTAAGCTTTTGCAGAAAAATTTAATTAAAATTGTCCGCGCACCTTACATAGTAAAGGTTTCAGCAATTTCATGTAAATCAATTGACATTCCACCATGTTAGAATTATCCCATCCGCGAAACCGCACCTTGAAAACCAAATACAACAAGCTTTTCCGGCTCCCGCA # Right flank : CATTGATCTACTCTGTATTTATTATATGGGTCGCCCGGGATTCGAACCCGGAACTAATCGGTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCGACCCTTTTGCTTTGTTTGCAACTTTGCCATCATAGCACAAACACCATTGGATTTGTAAAGGGGTTTTTAGAAAAAACTTGCCGTCAATCTAACAGATGCTTGATAGCTGGCTCCTGGCTCTACCACAGTCAAATTTTCGCCTGTGTTTAGAGAGTTGCGCGGCGCACTCCAAGGTTCCAAACAATAAAAGTCTTTGCCCTTGAGCGTCCAAAATACCACGATGGGATATTCATCGCCGTAATCTAAAGTCAATTTTAATTTACGACTGTTGTCTGTGACTGTAGCTGAATTAGCAGTTAGTTCCTTAAAGGCAACATCAATCTCATCCAAATTGAAATCAAAATTCCCACCAAAGAATTTTCTTTCCTTAGTTCTCTGGTCTTGATACTCACCAGCCGGAATCGCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 47103-47428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000022.1 Nostoc sp. FACHB-190 contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 47103 37 100.0 34 ..................................... AGATAGCAGGCTTTTGGAAACGTTTAGCTCGTGA 47174 37 100.0 36 ..................................... TTGGTACACCTTACTGCATCATGATGCCGCCCCCAA 47247 37 100.0 35 ..................................... AAAGATGTCTTGAATTTCTCTGACTTGCTTGGGAT 47319 37 100.0 36 ..................................... ACTAGGGAGCCAAAGTATTCCCAATCAAAATCAGGG 47392 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 36 GTTTCAACAACCCTCACGGTAGGCGGTGGGTTGAAAG # Left flank : CCTGTGCGTTCATCTAAGTGTTTGTTAGCAGTAATTGTTAGGGTAAGCAAATGCTGCTTTTAGATGAGAAAGGACTCGCACCGAGACGCATAGGAAGTATAAGGTGTTAGGGTTTCAAACAGCCCAGAACCTTTGCTCTTGACATCAAACTCTTTTAGCTTGGTGTTGGGTGCCAGAGCGGCCTGTATCACTGAAATCTTTGATTTTGGTTTTACGAGGACTTCTATCTCTTACTTTATAACAAAGTAAGGGTACGGGTATACCGTCACGGTGGCTACTGAACTACCACCCCCTACTTCTTAATTTTGATTTTTGGCAAGTCAAAGCAGAGGCAAAATTCCCAGTGATCTGTCAAATTGCTAAAACTCTTACCTTGACTGAATTTTAGAATTTTGAAGGCGAATCAAAGTTTATTTATCGGCGATAGAAAATTAGTTTTGAGGTAGACCTGCCAAAATCACTTTTGAAAAATAGTAAAGATAAGCGTTTGACAAGTCAGG # Right flank : GTTTATTTAACATATTTTAAGTTCTCACACTTGTTTTGCATAAGCTAAGTTTTACCAGTGGATATCGTATAATTATGTATTAGGGTGGTATGAAAGGAGTGCTGCGATCGCACAATGTAACGCAGCAGCAGTTTTATAAAAATTAGTTTTTTTCTTGAATGAAAAAGTTACATAAAGGCAACTAATAATTTGCAATTATGAAATATTGCGCTTGCTGTAACATCTAGTATTAAAGTCAATACCTCTTACTAATTTGTATAGTCTGATTTTGGACAAGAATTCTTTAAAACTGGTTTCAACTTTGGACAAGAATTCTTTAAAACTGGATTGATGGCTGAAAACCAAGTCAATATGTAGCTTATGCCGTTCAAACCTGTCAAACTGGACAAGAATTCTTTAATACTGACAATAATTATTTAATGTACAATGGAGAATAGGAGACTCGAACCCCTGACCTCTGCGGTGCGATCGCAGCACTCTACCAACTGAGCTAATTCCCC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCCTCACGGTAGGCGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 398524-397743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000002.1 Nostoc sp. FACHB-190 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 398523 37 100.0 34 ..................................... AATTCTCCAACCATTCTTGGGCGATCGCTTTTGC 398452 37 100.0 40 ..................................... GACGTTGACGGAACACTGACCGATACAATTAGCGGCGAAA 398375 37 100.0 41 ..................................... TGAAGGCATTATCTTGAGCAGCTTTTTCCATCTCCATCCTT 398297 37 100.0 41 ..................................... TATTGCCGAAAGCAGGCTGATAGCCCATTTCGGTATAATAA 398219 37 100.0 37 ..................................... TACAAAATTTACGGCGGAGACACTGGGGCTTACTCTT 398145 37 100.0 31 ..................................... CCCAAACAAAAATTTCACCATCGCTTTCAAC 398077 37 100.0 37 ..................................... GGAGAAGTCTTTAATACATTGCTTGGATTATGTTCTA 398003 37 100.0 43 ..................................... TCAGCTTTTGATTTTGAGCAATTAGCTGTAATTGCTATGGGTG 397923 37 100.0 36 ..................................... TTTATAAACCTGTATCCCCTGCTAGTTGGTACAGGT 397850 37 100.0 34 ..................................... GGGTTGATAAGTTGATTTGATTTGCATAATAAAA 397779 37 86.5 0 ...................T.......T.G..C...T | ========== ====== ====== ====== ===================================== =========================================== ================== 11 37 98.8 38 GTTTAAACTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : TAACAGGTTTAGCCAAACAAGTCACAACCATCGATGTGACAATTCCTGGTTCACCATCACAAGCTAAGAATTAATCATCTAGAAGTTATGCACAAAGATTGGCTGTGAAAATGGGTGTAAGGGTGTAAAAGGGTTTTGAACATCTACACCCTCACAAAGAAGTCAAAATTCAAAAGTCCGAGAATTTTTGACTTTTGACTTGATTTTTCCCCGTCACCCATTCTCAACAAATAACCTTTGTGCATAAGCTACAACCAAACAAAATTCTTCTCGATGCGCGGATGGGTAGGTGTACAAAATCTCGCTTTTGACAAAATAGCTAGATTCCTTGAAGTGCAAGCTTTTGCAGAAAAAATTCCTAAAAATCATCCGCGCACCTTATCCAGTCTAGGTTTCAGCCATTTTAGTTAACTCAACTGATATTTCCCCATGTTAAAATCAACCCATCCGCGAAACCGCACCTTGAAAACTAAATACAGACTGCCTTTCCAGTCCCCGCA # Right flank : TTGATGTGAAAGGGTATTTAGGGGGGAGCTAAAATGTCTTGCTACCAAAGAGAGGACTTTTAAAACATCCTCTCAAATATCAATAAATCCCCCGCTAGAAAAGATAGATTATTTTAAACTTAAAGAATCATGTTGTGATAGTAATTTTTCTACCTTTGCCTCATCAATTCTTGCTGTTAATCTTTTAGCTTCATGCAAATCTCTGGTTGTTTTTGCCAAGGTAAAAGTCGAACCAACAGAAAAAGCTAAACCCATACCCATAAAACCTTTTACCCAGTTATCTACGGGCAAATTCACAATACCAAAGCTAGTCATAGAAACAGAAAGCATAAAAGCAGCCCATGTTTGAATAATCCAAGCTGTACTATCTTTTTGTGAACTTAGTTGCTGCATATTTCCGCCCGATAAATTCAAAATTTTCTAGCAATAGCAAAGGTAATTAGGATATTTGGAAATGAGACAAACTCGACAGAAAATAACTTTTAATTCTGTCACCTGTA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 49315-48342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000025.1 Nostoc sp. FACHB-190 contig25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 49314 36 100.0 35 .................................... AGAACAAAAACCATAAACTATGCTGTCTGGATTGT 49243 36 100.0 38 .................................... GCAAACAAAATAGCCAAGGCATATAAGGAAACCGAATT 49169 36 100.0 36 .................................... TAAATCTGTATGCGCCATGAGTACTTTAGAAGCCGT 49097 36 100.0 38 .................................... TATTCTAAGTTCTCAAATCTGCGTTGATTAAATAGCTT 49023 36 100.0 36 .................................... GAGAAAAAACTAAGGTAGTCCGTATTCCCTCCTCTA 48951 36 100.0 36 .................................... TCATTTATTTGTCGGCGTTCTTCCCGGTCGAACTTC 48879 36 100.0 35 .................................... GCGTACAAGGTGCGATCGCTTTTCAATTAAAATCT 48808 36 100.0 36 .................................... AACAATAGCATAATTATCAGAGAATGTTTTCTGGTA 48736 36 86.1 30 ....................T.G..........TTG CTTAGTCATATTAGAGAATGTTTTCTGGTA AAT,TG,A [48702,48708,48714] 48664 36 100.0 35 .................................... GAAATTGGCGCGATCGCTGTTTTGACAGATGCTAT 48593 36 100.0 35 .................................... TATTTACCAGTAAACTCAGAAGCGAAAGGACAGTA 48522 36 100.0 36 .................................... TTTCAATCGCTACTTGTTTCTCTATATTTAATATAG 48450 36 100.0 37 .................................... AAAGCTTTAATGGTGAAATCAATGTTTTCGTTGATGT 48377 36 97.2 0 ...................T................ | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 98.8 36 CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : AGCTTACAACTTACTTCAAGGATATGGCGAAAGGATGCAATATTCTATTTTCCGTTCTTGGTTGACCATGCGATCGCGCGAAAAATTACGTTGGGAACTGGAAAAAATTCTCGCCCCAGAAGACAGTCTATTATTAATTCGGCTGTCCAATCAGTGCGTTAATTCTATTCCGGCTTACAATCGTCCCGGCGCTTGGACAAGTCAAGAAGAACCTTACCGGATCGTCTAAAAACATGGATCTGAGTTTGTGGAACATGAAATACAACTCAAGCAGGATAAAAACCTGACTGGGCTTGCTTTTGAGCTTTTTTAGGTGAACAGGAGGTGCTTGCATTTTTTTGCGTGAGGTCAAAACCTAGTTCTGGTAAGCGTTCTAAGTTGAGACGGAAACTTGAAAGTTTAACTTTTGGTAAGCAATTGACTTCTTTTGTTGCTTTTTTACTTAGATGCTTGCAAAATAGCAACTGAGTGGTCTGATGACATGGGTTTGAGCGATCGCT # Right flank : GACAATAACTATCAACTGTCAACGAAACTTTTTGTAATTAGTCTTGTCTATAAAACTAATTGATTAGTTTATCAGGAATATATATGCGATCGCCTATCGTAATCGGTACAGGATTACTTGTATCTATAATTTTAAATACCCAAGTATTTGCAAAATCTACAGTTAATTTACCACAAATCACTGCCCAGAACTCTCAGCAACAAATATTAAATCAAAATAATCAAAAGACAAACTCAGGGCTGATTACTCTGCAAAGAACAGCCTGCTATGGTACTTGTCCCATTTATAAAATTACCATCTTTCCTGATGGGAGAGTTGTCTACGAAGGGGAGCGTTTTGTAAAAGTTGTAGGTAAAAGAACTGCCAGAATTAGTCCCCAAGCAGTAAGAAGATTAGTTGCAGAATTTAATAAGGTAAACTATTTTTCATTAGCAAATAGCTACCAAGGTGGAAGGACAGATGCGCCTTCTGCAATTACTTCTTTAACTATCGGTAAACGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 60979-60579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000025.1 Nostoc sp. FACHB-190 contig25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 60978 37 100.0 36 ..................................... AAATAATTCTTCTGATGATTTGCATGATTCTTTAGA 60905 37 100.0 35 ..................................... AGTGTCTGCCATAGAACCGGGGCGGGCAGTCTTGA 60833 37 100.0 37 ..................................... CTAAATTTTTATTCGTCACCCCCATTGCCCATCTCAA 60759 37 97.3 35 ....................................C TCTCTAACAGTCGAGTCAACTACAACGACAAAGGG 60687 37 100.0 35 ..................................... TCAGGCTCAGGGTCAAATTTCCATACTTGTTCTTT 60615 37 83.8 0 ....................AAT.......A..T..A | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 96.9 36 CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCACT # Left flank : TCTCACCACACCTTTCAAAGCCTGTGCAGGGGAGCAGGGGAGCAGGGGGGCTGGGGAGAATGAAGGTACTCTCTCCCCAGCCCCTCCGCACCTCTGCCCCTCTGCCCCATCAAACGCCTGAAGCTTGTGAGAAATGCGGGATACACTCCTATACCCCTACACCAATAACTAGCTACCCAACTTTTTAGCCTTTCATCACTATATTCACAATTCACATCTTGCAGCTGTTTTGCATGGATCTACGACTGTGCCTTTCAAAAACCAATCAAAAAATCATATAACTGTTGTCAGTGCTGACTTCCAAGGTTTTCACATCACTTGAAGGTGCTTGCATTTTATTTTAAGAGCTTGAAATCTAGATGAGACAAGGCTTCCAAGATTAGCATCTGTTCAAAAAAATGAGACTTAGGTAAAAATTTGTTTTCTATATTGCTCCTGGGTGCTAGGTGCTTGTAATATCAAATCTCAGGGCAGACAGGATATGGATTAGAGCGATCGCT # Right flank : ATAGCGATATCGTCACTGCTATAGAGTTCAGTTAGGGATTTCCAAGAAATAAATTATCCAATCTTGTGGGGCGGGCTAGAAGCCCACCCCACAAGAAAAATTGTATGTTTTTTTATTTGGAAGTCCCTTACATAGCATACCCACCATATTGATAAGAAAGTTTGATTTTTGCTCGGAGAAATCAAATTTTTTTATTTTCTTCTGAAGGCGGAAACAATTTTGCCGGGTAGTCTTTCTAAGATGAGTTAAATCAATTAAGCGATCGCTATGTCTCGTCATCTAGAAAGATTATTACAACTAGATTCTCTGCTCAGAACTAGGCAACGCCCAACAAATGCTAGTCTCGCTCAAGAGTTAGAGGTGAGTGAACGGACAATTCGTAATGATTTGGCTTTCTTAAAAGATCGCTTTCATGCTCCTTTGGAGTATAGCCATAAATTAGGACATCATTATACTGAACCAGAATGGCGATTGCCGAGTATTCCTTTATCTAAAGGTGA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATTAAACCTTTGATGCCGTAAGGCGTTGATCACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2424-2743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000003.1 Nostoc sp. FACHB-190 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2424 36 100.0 31 .................................... CCAAGATCCGCACCTGCGGGGTTGGCGTTGG 2491 36 100.0 37 .................................... TTGCCATTGCGACATTCGGAAATGTCCTTAATATCAA 2564 36 100.0 36 .................................... AGCACTTCGTACGGTTCAAGCTCCGAGATTCTCGAA 2636 36 91.7 36 ............A.............AG........ GAGTTGCCATAGGTGCCGTCATCCTGAAGAATCTCA 2708 36 88.9 0 ...............C..........AG.......T | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 96.1 35 CCCTACCGATTGGGTTAAATCGGAATTATTGGAAAC # Left flank : GGCTTCGTTCGCCATCTTCATAAAACCAGTTAATTAATTGCGATCGCCGCATCGCAGTAATTAAATTTTGGCTTTGGTTAAGCGCACCATCGACTAGATTTTGTAAAAGTCGAAAGTTAGGAAATAAAGGAAAATGTTGCAAGTCAGGCATATAATACTTTTTTAAAGCTGCCATTTTAACTTAACAGCCCTTCGGAAACGGATGTTTCCACAGAAGTGACTCAAATTTTGTAAAGATTGCTGTGGAAAATGTCTAAATTGAGTCAAACTATTGCACCATATACACTTGAAGAAATCAGCAGGCATTTTCACAACTTCATCGACACACCTCGCCAAATCGCCGAAACCCTATATTTTTCGTTGAGGTGCGTCGATTGCTTACAGGGTAAGGGTTTGAGCTATGTGTTTTGGTCAATTTTCGCTGAGGATTTATAATAATTTCAGAGGTGCGTCGATTTGGCGGCTGAAACCCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : TGCTTCATCGAGTGGTTCAGATCCCCGACTTCTTAAAGAAGTCGGGGATCTTTTAGTTTACGAACGATAAGAATGCTATGGCTAAAAACACTTATAAAAAAAATAAACACTGTCCGACCTAAATTTTTAGAAGGTTTGACAGTGTTTATTACTAAGAAATACGAAAGAACAATTAAGAAGCAAGCTTTAAATTTACATAGCGATTCAAGCTAATTTTTTCCTCAGCAGCTTCAATAGCAAGCTTACGATGAAGTTCTGGCGGAATACGAACTTGAAATTTGCCGCTATAGTCTTTTTCTGCAATGGGTTCGGGAATAGACTCGCCGTTAGCTTCCATATCAGCTACTACTGCTTTAACTAAAGATTCAATACCTTGAAATGCAGCTATTTTATCCTCATCAAGATAAGATAAGCTAGGAAATTCGGCGCACAAACCCACGTATTCTTGATCTTCAGACGACCAAGTAACTCTATAAGTGTAGTGGTCATAGTTCTTCATT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATTATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 15368-14833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000003.1 Nostoc sp. FACHB-190 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 15367 36 100.0 38 .................................... GAATGTTCCGCCTTTTTTTAGGATTATTGTAGCAGATA 15293 36 100.0 36 .................................... CACATAAAGTGGAAGAAAAACAAATGCTACGATGGA 15221 36 100.0 37 .................................... ATTGTGACCTTGAAGCCGTCGGCCGTAACGCCGAACA 15148 36 100.0 32 .................................... GCTGCATTATTAACCCTGGGGGCAATAATTCC 15080 36 100.0 35 .................................... TCTCCGTCATCACGAATGATGAGGCGTTTACGAGT 15009 36 94.4 34 ...............T...........T........ CTGAATCCGCCACCGATTACCGCAATTTGGTTGT 14939 36 97.2 35 ...............T.................... ACAAGGATGCAACTTATTACATTTTCTTTTATTAT 14868 36 88.9 0 ...............T....T.........T.T... | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 97.6 35 CCCTACCGATTGGGTCAAATCGGAATAGTTGGAAAC # Left flank : CAAGTAACAGGACGTTCTTTCAACCCCATTGGAATTACTCTCAAGCAGCAGTTTCGCAAATAGATTAGCTAAATTTTTGTATAATTACTGTTATATCTAGTAGTCTGCCAAGATAACTTTGCGTGGTGGCTGGCAGAGGGGCAGAGGGGCAGAGGAGAGAGAAGAGGCTTCGGGGCAGAGGGGCTTCGGGGCAGAGGGGAGAGTACCTTCATTCTCCCCTGCTCCCCTGCTCCCTTGCTCCCTTACAGGGTCTACACAGCAATATTGGGTTGGTGGACTACTAGGTTTGAGGCGTTTTCACAGAGTTTTTTATTGTTCATCGACGCATCTCGCCAAATCGCTGAAACCCTATATTTTTCGTTGAGGTGTGTCGATTGCTTACAGGGCAAGGGTTTGAGCTATGTGTTTTGGTCAATTTTCACTGATGATTTATAATAATTTCAGAGATGCGTCGATTTGGCGGCTGAAACCCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : TCAAAACTAGAAGCTTAAATTTTGTAGTTTTGATAACTAAAAAAGAGGTTAGATATATTAGTATCTAACCTCTTTTATTTCTCTATTTTGGCGTTTGGGATTTGATTAAAGATTACGCCTGATTTTTAGCGCCGGAATTTTTGGGGAAAACACTGTTTCCACAGGTATGCAATAGTAAAACTGTTGTTGAACGATCGCAATTATCTATGCACAGCTACCAAATCCGTTTAGAAGGCGAAGTTTTGCGGGTGGGATTTAATCGAGTTTTACCCGCGCAGGGCGATCGCATTGTGCGCGACGCTCTAGAATTATTAGAACAGATGATAGACTCTGGGCAAATTCCTGGGGGAAATCGCCTGTTAATTGACGGGCCGCAATCTGTACCTGTAGCTTATGTGATGGCGCATAAACTATCACATTTATATCAGGCGATCGCTGTTCTAGATCCCAAAATTGGCACACCAGGATACAAAACTTATATAGTCACCATTTCTCACGGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTCAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 21661-22140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000004.1 Nostoc sp. FACHB-190 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 21661 37 100.0 38 ..................................... TAGCCACCACCTTTAATGAACCATTTGGTTCCCCTGAA 21736 37 100.0 34 ..................................... AACGGCTTGAATTTCTTTGTTTGTGGATACTATG 21807 37 100.0 35 ..................................... TACCATCTAAAATATCTTGGCTAAATCTTCTCAAA 21879 37 100.0 40 ..................................... TGCCGTGAGCAACTGTGCGACTACGCCAGTACTCATTGCA 21956 37 100.0 34 ..................................... ATCAGAGCTATCGGATGCTGGAAAATTAGATATT 22027 37 100.0 40 ..................................... CTGCACCGTTGACAGCTGCACGAACTGAAAGAGAGACTAC 22104 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 100.0 37 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : AATACATAATCCTCTATCTTAAGAGAAGTTGAGGCGATCGCATTTGCTGAGTCTTTGTTATTGCAAGCAGCCAACCACCGCCGCCGCGAAAGTTAACTCAGCAGCAATTGTAGGAACTGGCTTGATTTTTGAAATTATCTTTAAAGGCTGGGAGTAGGAAAGAGGATTTTTTTGGTGTACTGTATTTTTTATGCAAATCCAATGTTGTTCCTAATAGATACCCGACTTTTTGAAAAAGTCGGGTATCTGAGCAGCACGACAAAATTAGTCAAAATGCGCGGATGGGTAGGTGTACAAAATCGCCCTTGAATCAGAATGGCTGGATTCCTTGGAGAGTAAGGTTTTGCAGAAAAATTTAATTAAAATCGTCCGCGCACCTTACGCAGTATGAGTTTCAGCGATTTCATGTAAATCAATTGACCTTCCACCATGTTAAAATTATCCCATCCGCGAAACCGCACCTTGAAAACTAAATATAGTAAGCTTTTCCGGCTCCCGCG # Right flank : CATTATCGCTCATGGAAATTTTCAAGAGTTAGTAAATGATTGCAATTTAAACGATGAATTGTCTCACACAGAGGCACAGACGCGACAAGGCGTTTTATGTTTGAGTCCATGAAATTTCATCTCTTGATTCAGCAATACCAAGTCTTTATTAGTCAGACGATGGAGTTAATTATTCAAGGTGTTGGCAAAAATTAAAACGGGATAGGCGAACCTATCCCGTCAACATATACTAGCGTTTAAACTTTAACGCTGAGTTTAAGTTCCACTAGTCCAAGAGTTGATGTACTCAATTTGATCTGGTGTCAAGCTATCGATATAAATGCCAATAGCTTCCAACTTCAACCGCGCAATTTCTTGATCTACCTCAGTAGGAATCGAGTGTAAACCAGGTTCCAATTTACCTTGATTCTTCACCAAGTATTCACACGCCAAGGCTTGGTTTGCAAAACTCATATCCATTACCGCGCTAGGATGTCCTTCGGCTGCGGCGAGGTTGACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 61689-61279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000037.1 Nostoc sp. FACHB-190 contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 61688 37 100.0 35 ..................................... ATAAAAGGAATCACTCGCAGAGTAATGGGAAACTC 61616 37 100.0 38 ..................................... GTAGTTGGTGTAGTTGTCAAGGTTAAACAGGGTTAGCT 61541 37 100.0 37 ..................................... GGATGCTCCTTGCATGTCTGATAACTGCTGCATCATT 61467 37 100.0 37 ..................................... TGGGTGTTTGCAGTTGCTAAAGAAGTGCTGCCAGCAA 61393 37 100.0 36 ..................................... GTGTTGACTAAGCTTTTTTAGCCTTTGCCCGTTTAA 61320 37 83.8 0 G.....................G...ATC.......A | TG,ATC [61282,61292] ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 97.3 37 ATTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : GTAAATCCCGCCTAGAATTAAAATCCCAGGCTCATAGCTATGGAATACATAGAAAAATTAACCGCAGATGGACGCAGATAAACGCTGATAAAATAGGTGTTTCTGAGGCAATATTTAAAGCTAGTAAAAGTAAAAGTAGGTTGGGTGTAACGAAGTGAAACCCAACATGGATAAGCAATACAGCAATCCTACATAAATTACAAACATCGCGCTACCTTGTCTACCCTGTCCTCCTTGTCTACCTTGTCTCTGTTATGTTCCTAGCACCTAAAAATGCGCGGATGGGTGGGTGTAGAAAATCAAGCTTGAGACAAAATCCTTGTATGGCTTTCCACATAAGCTTTTCGAGAAAAATTAAATTAAAATCATCCGCGCACCTCACGCTGTCCAGGTTTCAGCGATTCACTATAAATCAACTGACATTTACTAGTGTTATAATTAACCCATCTGCCAAACTGAACATTGAAAACCAAATACAGACTGATTTTCCAGCCCCCGCC # Right flank : TTTCTATATCTTTTTCTTCTTTCTTACCTTTGCGTCCTTTGCGTTCTTGGCGGTTCGTTTCCATATCTATGTTTTTCACGACTTATTTAGGATTGCTATAGGTGTTTAATGAGTGTATCTTTTTGGCAATCTAATTGTAACTTTAGTTCCCTTTTCTTCTTGACTAGATAAACTAATATTCCCACCATGTAACTCTACGCAAGCTTTAGTAATTACTAAACCCAAACCTGTTCCTGGGATAGTGTCAACATTACTACCCCGACTAAAAGATTTAAACAAATTTTCTTGATCTACAATGGGAATACCTATGCCCTCGTCTTGAATGTCTAGAAATATTTCTGATTCCTTACCATTAAGATAAACTATGACATTGCCACCATCAGGAGAATACTTGATGGCATTAGATAATAAGTTTAAAAATATTTGGCGCAAAAGTCCGCGATCGCCCCAAAAGTTTTGATAATTGCCTGTCACTTGTAAAATGATTTCATGGCGATTAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 10921-8231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000043.1 Nostoc sp. FACHB-190 contig43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 10920 37 100.0 39 ..................................... ACCAATACACTTTCTCCAAGTGTTGCACCTTCGGTTAAG 10844 37 100.0 35 ..................................... TGGTCTATTTTAGACCGCAACTCTACAGGGACTTG 10772 37 100.0 35 ..................................... CAGCAAAAGATTCTGGGATATTCTGTAATAGAAAA 10700 37 100.0 40 ..................................... GTTATTGTTAATTGAAGATGAGCGATCGCCCGATATACGA 10623 37 100.0 37 ..................................... AACTTTTTCCATTCCACGATTAGCAGCAGACATAAAA 10549 37 100.0 41 ..................................... TTTTACAGGGGATTTGGCTAGTATCTATAAAGATATTAAAT 10471 37 100.0 38 ..................................... CGTAATGGGTTAACTGAGATAGCAACCCACTGCTTAGT 10396 37 100.0 34 ..................................... GTACCTACGCAGTTACTGCACTCAAAGTCTTTTG 10325 37 100.0 36 ..................................... TATGAAAGTCCCACTCACCAGCACCAAGGCTTGAGT 10252 37 100.0 36 ..................................... CGAACAGATGGCTTAACAACTGAAGATGATCCCAAG 10179 37 100.0 37 ..................................... GAGTATTCCTGTGCTTCGCCAAGAACATTAGAAATAG 10105 37 100.0 35 ..................................... AGCAACTCAAGTTCATCTAATCCTGTTACCTCTCC 10033 37 100.0 34 ..................................... TTTCTTCTGTCGTCATCAAATCATCATCGTCAAG 9962 37 100.0 34 ..................................... AACTAGCAAAAATACTATTGAATCTTCGCTTAGA 9891 37 100.0 35 ..................................... AATTAACACTTAAAGAACAAATCAAAATATCTCAG 9819 37 100.0 38 ..................................... AACTTAGTTTCGTTATCCGTAGCTTTGGCTTCTATTCT 9744 37 100.0 40 ..................................... AAAAATTATTTATATCCATTACTTACAATCTCCCATTGCA 9667 37 100.0 41 ..................................... AGACAGCTAAAATTCCTAGAACTTATGACAAGGCTATACAG 9589 37 100.0 36 ..................................... CAAACTTACTGTGAGCGACTGGAAGTAGATTTGAGT 9516 37 100.0 35 ..................................... ATACTTTATCGTAGAAACAATCAATTACCGTATCA 9444 37 100.0 35 ..................................... TTCCCCTCAATCCATGCACCACCATTCCAACCATA 9372 37 100.0 37 ..................................... CTAAAAGAATTATTGAATACGCTTATTAATCCATCAA 9298 37 100.0 35 ..................................... TTTTCTTCACCAATGCGTTGATTCTCAACTGCCAC 9226 37 100.0 36 ..................................... CCCTCATCCCGCGATCGGCACTGAGACAATGATTGT 9153 37 100.0 38 ..................................... TTTTGAGCTTCGACAAGGAGGAAATTACTTACACCCAG 9078 37 100.0 37 ..................................... AGAAGAAAAGACTTGAATATAAGTCTTATATCCATTT 9004 37 100.0 36 ..................................... GACCACAGAACTAGAGGAAAAGAATAAAGAGATAGC 8931 37 100.0 36 ..................................... GCTTTTATTTCATATCCATCATTTATAAATCTCCTA 8858 37 100.0 35 ..................................... ACCTCATCATTAACTAAAATACAGACATTATTAAA 8786 37 100.0 40 ..................................... CAATACAAATCTATACAGGCATCTGTGCCTTTCCATTGAA 8709 37 100.0 42 ..................................... TGATGTCTTCAAGAAGTGCAGTCAGGTGCGGCAATATTCTTG 8630 37 100.0 35 ..................................... CTTCTGCTGGTGCGGCAATTGGTTCTGTTGTTCCT 8558 37 100.0 34 ..................................... ATTTGCATCCGTTTAATTACCTAACGCCTCAATC 8487 37 100.0 35 ..................................... TTCACTAGATTGACGTGTCCATACATCAGCTTCAG 8415 37 100.0 36 ..................................... CTGCTGGTTTATATGCAACATTAACGCTGGGCTTAG 8342 37 100.0 38 ..................................... AGCTAAATGGTTCTCGGTTTTCATGATGAACCGTTTAG 8267 37 86.5 0 ............C........T..........C..CT | ========== ====== ====== ====== ===================================== ========================================== ================== 37 37 99.6 37 GTTTCCAAACCTGATTACCCCGCAAGGGGACTGAAAC # Left flank : CTAATTATTTATGATCTGCCAGATAACAAAGCAGCTAACAAACGTCGCACTCGTTTACACAAATTGTTGTCTGGCTATGGTAAATGGACTCAATACAGTGTATTCGAGTGCTTCTTAACAAACGTTCAATTTGCTACACTACAGACCAAAATAGAAAAATTAGTCAAGCCAGAAGAAGATGCTGTACGAATATACGTGCTTGATGCAGGTGCAGTGAGAAGAACCATCACGTATGGTTCGGAAATTCCTCGACAAGAGCAAACAATCGTCTTATGATAGATGAAGGTATCGACTTGATGATTGTCGAGTCAAAGCGGGGTCAAAAACCCTGGAGACTCGTCAAAATCGCCAGAACCTTGACAAAATAATAGTTATAGCGTTTCATAAAATGGGAAAGCTGCAAATAATTTGCAATAAGAGAGGCTGAAAATGACCAAAATTTTCGACTCGTCAAATCGCTTCCCAGGAGGCTTGCCCTGTAATAGTTTCAGAACCGGGCG # Right flank : CAGTGATCGCCATCCCAGCCGTTAAGTAATCACACAGAATTATTTACACATACGTTTCTAGTCTATATAAGGGTTTCATGGCTTAAATTTGTGTAATTAATTTTGTTTAGCTACTTACCTCTGCTCATTAATAATTTTCCCCAAAGGGGGATGAAATCGCCTAAAATATTCAACATTCTTCGACTCAACCCATACGATGCCCAGAGCAGCCACAGCCCCCAAGCGCAAGCCTAGAGCTAAATCAACACCGAAAGACTCAGTTCCTACGTGGACAGATGAAACGGAACTGGTAGGCTTAGTGTTTGATTTAGAGGCAACAGCAACGGCTTCTCTCTACTCGCAATATACGATTGGACTCCACGCTTGGTTTCTCGACCAAGTGCGCCAAGTTGACCCAGAGTTATCAGCCTACCTGCACGATGGCGAGTCAGAAAAAGCCTTTACTATCTCCGCACTGGAAGGTCAACTGCTACCTAGTGGCAAGCAACTGAAACTAGTCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCTGATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 33964-32150 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000043.1 Nostoc sp. FACHB-190 contig43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 33963 37 100.0 34 ..................................... AACTAGCAGCGAGAGAGCTACTTTGCGATAGCAA 33892 37 100.0 38 ..................................... TGGTTTATATCTTTTCAATCGCTATCCAGTGCAGACTT 33817 37 100.0 36 ..................................... ATGCAAACATTTGATTGGTACAAAGAAAGAATAAGC 33744 37 100.0 39 ..................................... GTAGCATCCAAAATTTGAGTTAATGTACGCTTTGCTAAG 33668 37 100.0 36 ..................................... CCGGGAACTAACTCAATTAGATGGAATCAGATGGTG 33595 37 100.0 36 ..................................... TAGAAAGTTCCTGCACTTGGCTTCTTCCATATAGAG 33522 37 100.0 39 ..................................... CTGAAAGGTATGAACGCTAACGCCCGCGACTACCTGAAG 33446 37 100.0 39 ..................................... CAGTCTATAGATTGAACGAAGTAGAAGAAAGATTTTGAG 33370 37 100.0 37 ..................................... AATAGTTTGAGCTTTACTACCAAAAGTAAAACCGAGG 33296 37 100.0 35 ..................................... GCTAAAAGAAGCATTGGACATTTTACACTCATTAA 33224 37 100.0 38 ..................................... AGAGAATATACTTAGGAGTCCCGTTTCCTCTTATACAA 33149 37 100.0 37 ..................................... AAGATGACTATAACTATCAAACTCAAGCAGGACGTAA 33075 37 100.0 38 ..................................... AATAGTATTAATATTGCTGGTTGCTGCGGCATGATTTT 33000 37 100.0 37 ..................................... CAGAAAGAAAATCACTCATGATTCCTCCTCAATTACT 32926 37 100.0 40 ..................................... ATGAAATCTCTGATAAATTTCAAGAAATTTATGTGTCGGA 32849 37 100.0 37 ..................................... GATAGTTCCCCATTACCCGCACTCCCAAACCTCAGCC 32775 37 100.0 38 ..................................... TAGTGAGGAAGAATCCTAACAGTAGACCCAACCGGGAT 32700 37 100.0 36 ..................................... TTCATAGTATCTATTTTCTGCCAAAGTGGCTATAAA 32627 37 100.0 36 ..................................... GACGTGACGCTTGCATATCAGTCCAAGCCATTTAAA 32554 37 100.0 38 ..................................... CCTGCTCTAGTTGTTGATTTAGTTTAGCTGCTTCTTGT 32479 37 100.0 35 ..................................... ACTGGTGCGCCGGGTATCATGTCGGCGCTCATATC 32407 37 100.0 34 ..................................... ATTGAATCGCCGTCAATATCACGGTCATCAGCAT 32336 37 100.0 36 ..................................... TTTTATTATTAGTTCAGAAAGTAACAATGCTACAAA 32263 37 100.0 40 ..................................... ATGTGATTCATTTTCAACTGTGAACTCGACTTTAACGCCT 32186 37 91.9 0 .........GA.T........................ | ========== ====== ====== ====== ===================================== ======================================== ================== 25 37 99.7 37 GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Left flank : GTGAACTTACTGTAGGGGTGCAACATCTCAAGTCATTCGATTACCTGCCCCAGGAATGCCAGCAGATGCAGCAGGTGTGCGATCGCATCACACGGTTGCAGGAGAGCGAGAATTTGGAAGAAGCTGGTAGGGCTATGTTGAAGTATTTGGGGGAACTGAAGCGATCATATTTGACTGATGTGGAAGAAAAGCTGCTAAGTGTGATTGAGCAAGAATATGGGGTTACGGATTGATCTAAAGTGTAAAAAAACTCGACAATAGAAAATACTCATCTTATGATTAGGTAATCAGCTTGATGTTTGGCAAGTCGAAGTGGGGTCAAAAACCCTGGGGGGTTCGTCAAAATCGCCAGAACCTTGACAACAAAATAATTACAGCGTTTCACCAATCAGGGAAGTTGAGAATGAGTTGCAATAATAGCGGCTGAAATCGACTCTTTTTTGAGGTTCGTCAAATCGCTTCCCAGGAAGCTTGCTCTGTAACAGTTTCAGCTTCGAGCA # Right flank : CAGTGATCCCCACTTTTATCCGAGTTTTACCAACCGTTTCCAAACCTAATTACCCCGCAATATCTCCCTTAGAATTAGGTTTTATATAAATTCCAAGTATTTAGAATTTCTAAAGCCATTTCTGTTCTCATCTCCCAAGGCAGTATAACTTCTACTTTTGACCCTAAAGCACGTAACCATCTAACAACATAGTAGTCTTCCATTCGGTAATCAACTTGGTAATAAGCATCTGTGCTAGGACGCGATCGAATAATATCTAAAATAGCTTTTCGATGTTCAAGATTTAGGGTGTATTGTTGTGTTAACTTAAGAGTTTCTTCATAGCTAATTCGCGTAAATGTATCATGAACACTAATTCTATCAATATAGCGTTGATGAAAATCTTGCTCAAATCGCAATACCATTGAGGCTTTGTCCTTATAAAAATCACATCCCCATGCTTCTTTTAACTGAGCGTTCACTATTTTAGGAGTTGGCAGATTGTTATCTTGATACTTCTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCCAATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 14791-15352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000044.1 Nostoc sp. FACHB-190 contig44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 14791 36 100.0 35 .................................... ATAACTGGAAGTTAGGTAAAGGCAAACCGCCAACT 14862 36 100.0 38 .................................... CCTTTGTCACCAGCGAACATAACCCTCTTAGGATTATC 14936 36 100.0 39 .................................... TGATTGGCTTCAAAGCTTTCCTCTCCGCGTATTTCCCTG 15011 36 100.0 40 .................................... CTTGCTGTTGCTATAGCGTAGTGGTATCCCAAACATTCAT 15087 36 100.0 46 .................................... TTCTCTTGTAATGTCATTTCAGGTGTGAATGGAAATTGCATAACAT 15169 36 97.2 41 ....................C............... TCGTACTTCTTGATATAGCGTGTAGTGATACCGCCGTAGTT 15246 36 97.2 35 ............T....................... ACCATTGTTGCCCACTGTTTCTTAATCCAGGCGCT 15317 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ============================================== ================== 8 36 99.0 39 GTCGCTTCTCTTCGGGGAAGTGGAATTAATGGAAAC # Left flank : CCTTTTCTAAATGCCATTGATTACTTTCATTTACCTTATAAAAGAGAAAAAGTAAATAATAAACTGCAAGAAATAGCAAGTTCCTTTAATTAGCTTTTAACAAATGTAATCTCACTTCTGCTAGAAGTGTGGCACTACATTAATAAAAGTGCTTGCGATATGAGTTTCGTTGAAAACTAAATTAATAGAAAATGAAACACCACTTTATTCTCAATTGCAGCTATCGCTTATTGGCTAATACTTTGAGAACGAATCAATGAATGCACTCCAGCCAGTAACTAAACAATTACTCAACTTCCACAGTTGTAGTTTGTTAATTTGCGGCAGGGTCAGAAAAAGTCTGAAATCATCATTATCTCGTTTACCCCGCCGATGTCCTTCTGGACAAGTGTTTCAGAGCTTTTGTCTTCCCACTATGGTAGAAAAAGTGGTTGCCAATTCATACCCCGTCGCAAATGGCATCTGTACATTAGTCCCTGTCTGGGTTTAAACTGGGTAGG # Right flank : CTTGGTCAGCTGCACGCTGGGCTTAACTCACAAAAATAACGCAGGAAGCGGGAAGCTCAGAGGCTTTAGCCCTGAGAGGCAAGCGACGGGAGCGAATTTATTCGCCGTTGTCTTTTTAGTTTTTGGCATGGTGCGGGTCTTCAATATATCGCTTAATAACTGCACTGCTAACATTACCTGCGGTGCTGACAAAGTAACTGCTAGTCCACAGTGTAGGCAGTTTTTTAAGCTCTGGGAACTCTTTTCTTAAATAATTGCTACTACGTCCTTTGAAAGCTTTAACAATTGAATGTGGTGCGTCTGTTGGTTTGACACTTACGAACAGATAGATATGGTCTGGTGAGACTTCCAAGGCTAAAATATCCCATCCTTTTTCTACAGCCAAATCAAGAAAAATCTGTTTTAGTCTAGTTGATATTACACCAGTTAAAACTTTTTTGCGTCGTTTGGGTATCCAGACAAAGTGGTAATTTAACAAGTATTTAACATGGTTATTGGCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTCGGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 17576-18048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000044.1 Nostoc sp. FACHB-190 contig44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 17576 37 100.0 34 ..................................... ACTCCAAGAAATCTTATGAGAATGTCCATTTTTG 17647 37 100.0 36 ..................................... TTCAAGACTCATCTGGAAACTACTTTCCAGATGAAG 17720 37 100.0 33 ..................................... AACTAAAACAATTGTTCCGCTTTCTTCTACTAA 17790 37 100.0 32 ..................................... GCTATAGTAGGCGGAATCAGCTATTACTTCTG 17859 37 100.0 34 ..................................... GAAATAGTAGTATGTTTTGTATCGCAGCAAGGGA 17930 37 100.0 45 ..................................... GGTTCCTCATCAAAAAAGTTTAGCAGCATGTTCATCATCGCAGGA 18012 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================================= ================== 7 37 99.6 36 GTCTCCACTATCAATGTGGAGGCGAATTAATGGAAAT # Left flank : GGGGTTGTATCGATCAGCTAATGGGTACATTGTTAATGCAGATTTAAATGGGGCTGCAAACATCCTCAGAAAAGTAGCCAGTAAGCTAGGCTTAGACCTTAGCCAACTGAGTAGACGGTGCTTGACGACCGTAGCGAGAGTAAGACTTTGGACACTACCAAAAGCTCTCTGTCCGCAGAATCTCAGTGTCTTTAGACCTGAGAGTGTCAATGAGCGATCGTACTCATATTTCACTCCTCCACCCATTTTTTTCGCGGATCACTAGCTGTTTTTGCGAACTCAGCAAAAAATCAGGCTACAACCTTTACGGCAGTTAACTTCGAGCTATTTTCACTAAAAACGGCATCCGCGAAAACGCTAAAAGCCTGATGCAGACTAATTTGTAAGCATTTTTATCATAGGGCAAACTTGACAGGCGATGGCTGAAACAGTACTTTTGATGAAGACCCGCGAATTTAGTAGTTGTAAGTCTTGTATTTCAAGCCTTTCAAGTGCCAGCA # Right flank : CTCATCAACCAAATCATCCTGGTTCTTAATTGCTAACTAGAAAGAAAATATACCCAACTTATCAGAATAAGTCGGGTATTTCTATTTTATGATTCTGCAAATTACTATTCTTGAATTTAAATTTTGAAAAATTTTACAACAACCTGAACGGGGCTTTTAACAATGGCAACCGAGGTTTTCCATTAATTCAACTTCCGAAGAAGTTTAAAGTTTTATAGGACTTCCCACCCCCCTTGCAGCGGCAGTTGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGACAACGCAGTTGATAAGATGCAAGGCATAAACAGTCAAGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGCATTGTTAGTACAGTACCGCCCCGCCTGGTTTTGTAAGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGCCGATGGTTTTGATCCTGAAGCAGTAGAAAAAGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGAATTGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTATCAATGTGGAGGCGAATTAATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 18898-18223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000044.1 Nostoc sp. FACHB-190 contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 18897 35 100.0 34 ................................... TTACCATGAAATTCGTCACGCTGATTTTCAATAA 18828 35 100.0 35 ................................... AATCAGGAGCGGTGACCAAACGCTGATAAATATCA 18758 35 100.0 36 ................................... GCGATCCATGACCCCAATCCGCATCTTCTTGCCCTT 18687 35 100.0 40 ................................... TACCAGCGATGCAGGCTCAAATCACTTTCAATCGTGCCAA 18612 35 100.0 36 ................................... CTTGCTTGTAAGCCCCTGAAAACTCAGATTCCAATT 18541 35 100.0 32 ................................... TTTTTCTACTGCTTCAGGATCAAAACCATCGG 18474 35 100.0 37 ................................... TTACAAAACCAGGCGGGGCGGTACTGTACTAACAATG 18402 35 100.0 38 ................................... TTGACTGTTTATGCCTTGCATCTTATCAACTGCGTTGT 18329 35 100.0 37 ................................... AACTGCCGCTGCAAGGGGGGTGGGAAGTCCTATAAAA 18257 35 94.3 0 ........................T.........A | ========== ====== ====== ====== =================================== ======================================== ================== 10 35 99.4 36 CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Left flank : ATATGTTGAGGATTATCGAAAGTTTTGGTTGTAAGAATATAGAGTTATAGCTGTTTATTGGCATCATTTTTACCAATCAAATCCCGCTTCACAGCAAGAGCATATCACTCGCCGCAAATACTTCACTCGTTCTTGTGCATTAAGCGATCTCATTACTCAAATATATTCCGACTCTCTGGACGGAGACAGTCAAAAATCTGTTGCAGTCTTCGGGGAAGGTCAATCGGCCTTATCTGACGGCGGTGGAGGAGAAACTGTTGAGTGTTGTGGAGGCTGAAGTTAAAGATAAAACTTAACTGTTGATTCATTTCGGGGCAAAAGTCCGAAGCTTCAAACCCTGATTCTTTCGTTGACAGCCCCGGCAGGCTTATTTAGTAAGGGTTTGAGGCTGTGTTTTTCCAAGTTAATTCTCGATTGAGGCTGTTGATTTTGATTAAATTTGACAAGCCCCGAAAATTAGCTGTAGGATTAGCCCCAGGTAAGGCTTTCACAGCCTAGCC # Right flank : CCTCGGTTGCCATTGTTAAAAGCCCCGTTCAGGTTGTTGTAAAATTTTTCAAAATTTAAATTCAAGAATAGTAATTTGCAGAATCATAAAATAGAAATACCCGACTTATTCTGATAAGTTGGGTATATTTTCTTTCTAGTTAGCAATTAAGAACCAGGATGATTTGGTTGATGAGTTTCCATTAATTCGCCTCCACATTGATAGTGGAGACTCCTGCGATGATGAACATGCTGCTAAACTTTTTTGATGAGGAACCATTTCCATTAATTCGCCTCCACATTGATAGTGGAGACTCCCTTGCTGCGATACAAAACATACTACTATTTCATTTCCATTAATTCGCCTCCACATTGATAGTGGAGACCAGAAGTAATAGCTGATTCCGCCTACTATAGCATTTCCATTAATTCGCCTCCACATTGATAGTGGAGACTTAGTAGAAGAAAGCGGAACAATTGTTTTAGTTATTTCCATTAATTCGCCTCCACATTGATAGTGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 32280-30927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000044.1 Nostoc sp. FACHB-190 contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 32279 35 100.0 32 ................................... AATATTCAATGTTGATTAACACTTGTTGATTA 32212 35 100.0 35 ................................... CCCTGGAGATGAGGGTGACGATTAGTTAGTAATAA 32142 35 100.0 36 ................................... TGACAAACATAAATTTTATCTTTCTGTAATTGTCTT 32071 35 100.0 44 ................................... ACTTCCCTATTTGGAGATCAGAATAAGTAAAGCGTTTAAAACAA 31992 35 100.0 37 ................................... AAGGTACACGGTTAGATTCAATACTGTCTCTTTAAAT 31920 35 100.0 40 ................................... AATTTCAAGTGTACGTAATAACCGTACCCAAACTCATGTT 31845 35 100.0 39 ................................... ATTCTAATTCTCTAATAATGTTTTTTGCGGAATTCTTAC 31771 35 100.0 39 ................................... CCTTTCAGGGCATCGCTAATAATCCCAAAAAGACGGACA 31697 35 100.0 42 ................................... CTAAAACAACCCCTAGGTCGATTTTGAGGAGGATTGTTGAGA 31620 35 100.0 39 ................................... TGAATTAATCCATCATTGACAAGGGATTCCAAATCTTCT 31546 35 100.0 40 ................................... AATCAACCCATGGATGCAGGGTTATTTCTACATTGCCTGG 31471 35 100.0 35 ................................... TACGGGTTCCCGCGCCACAAATGTTTGTGCAACTT 31401 35 100.0 38 ................................... AATTCTCCAAGCTCAGCGAAACCTTGCCCAGGCGTGTC 31328 35 100.0 37 ................................... TGCAATAACTGTGTATCGGCAGGAACTTTGTTAAGAA 31256 35 100.0 38 ................................... AAACTGATAAGAAACCTTACCTTCGGTAGGAGTAAATT 31183 35 100.0 41 ................................... ATGTGGGTGTGGGGAAGCCGCCAACCCGATATTGCCAGCCG 31107 35 100.0 40 ................................... CACTTACCGTAGATGGCCTGTATGTTTCCCTCCACAACAT 31032 35 100.0 36 ................................... TAGCAGAGCTATGATTTCTAATCATCCTGTAGATGA 30961 35 94.3 0 ........C.........................T | ========== ====== ====== ====== =================================== ============================================ ================== 19 35 99.7 38 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GTTTCGTGCGTTAGTTGTTGATTCTCTAGTTGTATATTTAACAAACCGAAACTTATTTACAATTGAGGATTTTACCTCTCCAGATGAGCGCAATGGGGTGTATTTTCAACCTCATGCGCTGAAAAAATTTCTCAAATACTGGGAAGAAAGGCTACAAACAGAAGTAAATCATCCTCATACAGACTGTAAATTACCTTACCGCCGTTGCATTGAGTTGCAGGTACGCGAGTATATTGCTTGTTTAATGGGTGAGGTTGAAATATATCGACCGATGATTTGGGATAAGTAAAACTTAACTATTGACTCGTTTCGGGGCTGAAGCATAATGCCTGAAACCCTTATTCTTTCGTTGACAGCCCCGGTCGCTTTGTCCAGTAAGGGTTTTAGCCTATGTTTTTCCAACTGAATTTTCAATTTAGAGTCTCCATTTTGAACAAATTTGACAAGCCCCGAAAATCTGCTGTAGGATTGCCTCTAGGTAAGGCTTTCAGAGCCTAGCT # Right flank : AGTAGTTTATGAACCCTGGCTAATTTCACAAGCCAGGGTTATTTTTAGCCTAGAATTTTGTCTGGTTAATCAAGTTATATACTGAGCAAAACTTATATACAAAGTTATATACAGAATAATCTTATATATATAGTTGGATATATATTCATCTGCGAGTATGTAATTAAGTAAAAGCAAAGACAAAGAACAACGCTTTTATCTTTGATTTTTACTATTAAACATTTACTTAATTCTAGTTATGACTACAATTTACATCACTGAACAGGATGCAGACCTGAAAGTGCAATTCAATTACCTAAAGGTATTTCATGAACAAAAAAAATGCGTGAGTATTCGGATTAATAATGTCAGCCAAATTATCGTTTTTAGCAATATTAAATTGCCAAATGAAGTAATAAAAGCTGTAGTAGCGTATCAAATTCCAGTCTTGTATATCACTCCATTCGGTGAAATCATTGGCAGGTTAGAGAAAACCTCACAACGACAATATAAATATTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 39564-40270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000044.1 Nostoc sp. FACHB-190 contig44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 39564 36 100.0 35 .................................... GGGATGTCTCACCATTACGGGATGCCTGTACTGCT 39635 36 100.0 36 .................................... GTCTGCACCGAAACTCCCTTGGGTTGCCCAAGAAGT 39707 36 100.0 37 .................................... GGTTGTGATCGCCCCTCCAACTTCATCCAAAATGCGA 39780 36 100.0 37 .................................... GGTTGTGATCGCCCCTCCAACTTCATCCAAAATGCGA 39853 36 100.0 42 .................................... GGCGCCAAATCTTAAATCTTGCTTCGCTGGCAACAATGTTTA 39931 36 100.0 51 .................................... GCCAGAAAAAACACAATCAACAGGACGCGGAGGCGCGAACGCGCCCCCACG 40018 36 100.0 35 .................................... CGCTGCTAAAACCAGTGATGATTTTGCAAGTGTAG 40089 36 100.0 37 .................................... CAGCTTCGGTAAACGGTGTTATCATTGCAGCCACAGA 40162 36 100.0 37 .................................... CTATTTACAGAATGAAAAACCTGAATAGCACTCCTGA 40235 35 91.7 0 ........-..TG....................... | A [40250] ========== ====== ====== ====== ==================================== =================================================== ================== 10 36 99.2 39 GTCTCCACTATCAATGTGGAGGCGAATTAATGGAAA # Left flank : TATATACGCAACATCACTGTTAAACAATTGCGCGAATCAGCTTTGAGTTTGGAAGTGTTAAAAGAACTTTTAGCAGTTACAGAGTTATCAGAAAATAGTTTAATTGATTGTCAAGAAGATGACACTCCCTTAAAACATCCCTTTTACTGGGGAGCTTGGATTTGCCAAGGAAATACAGATCCGTTGGTGAACTAGGGACAGTCCGAGGCTGGCGATCTTGTTGGTCAGTTAACTCTCCCACTATATTTTTTCGCGGATCAGTAGTTGTTTTTTTGGGACTCACCCAAAAATCAGGCTACAACCTTTACGGCAGTTAGTTTTTAGCGATTTTCACTAAAAATGGCATCCGCGAAAACGCCAAAAGTCTTATGCAGCCTGATTTGTAAGCATTTTTATCATGTGGCAAACTTGACAGGTGATGGCTGAAACAGTACTTTTGATGAAGACCCGCGAATTTGGTGGTTGTAAGTCTTGTATTTCAAGCCTTTCAAGTGCCAGCA # Right flank : ACTCATCAACCAAATCATTCTGGTTCTTAATTGCTAACTAGAAAGAAAATATACCCGACTTATTCTGATAAGTTGGGTATTTCTATTTTATGATTCTGCAAATTACTATTCTTGAATTTAACTTTTGAAAAATTTTACAACAACCTGAACGGGGCTTTTAACAATAGCAAACGAGGGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGTTTTATAGGACTTCCCACCCCCCTTGCAGCGGCAGTTGTTTCCATTAGTTCAACTGCCGAAGAAGTTTAAAGACAACGCAGTTGATAAGATGCAAGGCATAAACAGTCAAGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGCATTGTTAGTACAGTACCGCCCCGCCTGGTTTTGTAAGTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGGCAGCGAACAGTTTTACAAAAATCCATGAGTGCGAAATTTCCATTAATTCAACTTCCGAAGAAGTTTAAAGG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTATCAATGTGGAGGCGAATTAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 41350-40447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000044.1 Nostoc sp. FACHB-190 contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 41349 35 100.0 38 ................................... CATTTCCAGTTCCAAATCCGTAGAAGGACTCTTGCGAA 41276 35 100.0 36 ................................... CTTTGAGGGCCACTTCCAGCAAAAGCTGGAAATCAC 41205 35 100.0 35 ................................... CTATTCAGAAGGTGATAACACCTTGTAACCTAAAA 41135 35 100.0 36 ................................... CGCGAACATCAGAAAACTCACCATGCTGGATAACGA 41064 35 100.0 41 ................................... CCAAATGCACGAATTACCTCTGTGCAGCCAAAAGCAAAAGT 40988 35 100.0 39 ................................... CAAGGCGCGACGTGTCGCACCTTGATTCATCCATTAAAT 40914 35 100.0 37 ................................... ACTTCCGAAACCCAAGCTATTTCTTCGCCTTCTGGAA 40842 35 100.0 38 ................................... AAGAATTAGCCCTTCTGTGAGGTGTTTCATCCTCTTGG 40769 35 100.0 36 ................................... TTTCGCACTCATGGATTTTTGTAAAACTGTTCGCTG 40698 35 97.1 37 .........................C......... CTTACAAAACCAGGCGGGGCGGTACTGTACTAACAAT 40626 35 94.3 38 G........................C......... CTTGACTGTTTATGCCTTGCATCTTATCAACTGCGTTG 40553 35 91.4 37 T................C.......C......... CAACTGCCGCTGCAAGGGGGGTGGGAAGTCCTATAAA 40481 35 94.3 0 A........................C......... | ========== ====== ====== ====== =================================== ========================================= ================== 13 35 98.2 37 CCTTTAAACTTCTTCGGAAGTTGAATTAATGGAAA # Left flank : AGATTGTCAGAGTATGATAATTGGCAGTGGCCAACAGGTATTTAATAAAAGTAATTTTTAGAACGAGTGATATTATCTCGTGTTTTGGAACCAGAGAGATCGCACCCTCAAGTCATCGAAGTATATCCCCAAGCGTTTGCTGAAGCGCGTTCAGCAGATGGAGCGAGAGAAGGCAGGGGTTAGAGAGATTTTGGGGGTGTTGGGGGTAATAATCGGGGTTCTAGAAGAGTTTGTTTACCCGCCGATTAAGCTACTATAAGCGTAGATTGGTTAGATTAGTGATAAGTAAAACTTAACTGTTGAGTCATTTCGGGGCAAAAGCCTAGAGCCTCAAACCCTGATTATTTCGTTGACAGCCCCGGCAGGCTTATTCAGTAAGGGTTTGAGTCTGCGTTTTTTCAGTTTAATTCTCAATTGAGGCTCTTGATTTTGAGTAAATTTGACAAGCCCCGAAAATCTGCTGTAGGATTAGCCCCAGGTAAGGCTTTCACAGCCTAGCC # Right flank : CCCTCGTTTGCTATTGTTAAAAGCCCCGTTCAGGTTGTTGTAAAATTTTTCAAAAGTTAAATTCAAGAATAGTAATTTGCAGAATCATAAAATAGAAATACCCAACTTATCAGAATAAGTCGGGTATATTTTCTTTCTAGTTAGCAATTAAGAACCAGAATGATTTGGTTGATGAGTTTCCATTAATTCGCCTCCACTATCAATGTGGAGACTCAGGAGTGCTATTCAGGTTTTTCATTCTGTAAATAGTTTCCATTAATTCGCCTCCACATTGATAGTGGAGACTCTGTGGCTGCAATGATAACACCGTTTACCGAAGCTGTTTCCATTAATTCGCCTCCACATTGATAGTGGAGACCTACACTTGCAAAATCATCACTGGTTTTAGCAGCGTTTCCATTAATTCGCCTCCACATTGATAGTGGAGACCGTGGGGGCGCGTTCGCGCCTCCGCGTCCTGTTGATTGTGTTTTTTCTGGCTTTCCATTAATTCGCCTCCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTAAACTTCTTCGGAAGTTGAATTAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 9645-10193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000067.1 Nostoc sp. FACHB-190 contig67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 9645 37 100.0 35 ..................................... AAGCCCGATTCGTCTAAGAACTTATGCAGAATGCA 9717 37 100.0 37 ..................................... CAGAACGACAAAAGCACCACCGCAAACTCAAGTCAAA 9791 37 100.0 35 ..................................... TGAAAAGCTTGTCGTGTATCTTCCCAAGCCTTTTG 9863 37 100.0 37 ..................................... ACTCTAATGACCGCAATTGAATGGGCTACAAAAACTT 9937 37 100.0 35 ..................................... CAAAACTTACTGTAATTTCGGTGAAACTTTTTGAA 10009 37 100.0 39 ..................................... GCGCTACCGTGGTTGTACTCTTGTGTTGAGCATATCCAG 10085 37 91.9 35 ...................T.......A........A AAGATAGTATCTAATGCCAAACTGGGTGATTCTAA 10157 37 89.2 0 ...........T.............AG.A........ | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 97.6 36 GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : AACTCAATAATCCGAACCTTGAAAATATAATATTGTTGTAATAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTGCTGTGAAAAATCTGGGTTAGTTTGGCGGTTGGAAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAAAATTTTATAGATGAGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCTGTAGCCGTTATTCATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTTGGCGTGTCAAAGTGGGGGCAAAATCCCCGGAGTCCCGCCAAAACTTTAAAACCCTTATCCAGTCTTGAATTAAGAAACTAGCATGTCAATACATTTAGTATTTTAATTTTCAGTTCGAGACTCTTTTAAGCCGACCTGCCAAAGTATGTGTATGGAAAGCTCTGATAGCAAGGGTTCTAGACGGGTCGA # Right flank : GAGCGTCAGAAAATATTTAACAGAGGGTTGAAAGGTGCATCCGACTTGTAAGCATATTTATGAATATTATCAGGGAAGTCATCAAATAAAGATTTAGCTATATTTCCTGTACAATAGATGTCTGCAAACACTTTATCGAATTGGTTAGACGACATTAATTTGTTAACGTTTCGTAATTAGCATTATACGACACTAATTTGTTAATAGCGACAGTAATCTGTTAACAACGACAAATAATTAGTTATTCAACAGTTAAAAAGCCAGCAGCTGGATTTGAACCTGCGACCTTCCGATTACAAGTCGGATGCACTACCACTGTGCTATGCTGGCGTTGTAATTAGGCATCACCGATTTCTAATTATAGCACAAGCTTAATGGTTGTCTAGAGGAAGCTGCAAAAAAATCCTTGATTTGATGGGTCGATAAAGTTGATAAATTAATATTCATAGCAAAAGCTAACTCAAAATCCTGGGCTGGACGCAAAAAGATTGAATACAGTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 39223-40643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000006.1 Nostoc sp. FACHB-190 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================ ================== 39223 34 91.2 41 A..C.......T...................... CTATTTACCTGTAATGTTCCATTACTGATATTAACACCAAT T [39227] 39299 34 100.0 39 .................................. CAATATCCTGCCAAAAGTTCAGGAATTTGGATTTTTCCA 39372 34 100.0 40 .................................. CGGGATGGTGTAACACTTGAAGAAGCAGAAACCATTAACT 39446 34 100.0 38 .................................. CCCTTGTGCGGAGCCGAAGTCTCTGCCCAAGGCAATTA 39518 34 100.0 39 .................................. CACTTTTGTGAGTCAACATTTTTGTGGTGACGCACTATC 39591 34 97.1 41 ................A................. CCGTTTTTGGAGGAGAACAAAACATTATAGTTATCGTTCTT 39666 34 100.0 38 .................................. CTAAGGAATTTTACGGTTTAAATGATTCTATCTCAGTA 39738 34 100.0 38 .................................. CTGATGCTAGTATCGACCCAGGGACGCTCATTAGGTTA 39810 34 100.0 37 .................................. CTAATTAAAGGTGAGGTTTTAGAAAAGTACATCACCA 39881 34 100.0 36 .................................. CACTTTAAGTTTCTAGGGGGGCAGCCAACAATTTTT 39951 34 100.0 36 .................................. CTTAATGCTACTTTGGGATGAAAAAGGCTATATTGA 40021 34 100.0 38 .................................. CTAAACGAAGTTGGCATTGATCAGACCGACTTCATTCT 40093 34 100.0 41 .................................. CTCTAGCGAGATTCCTCCAGGCTTGCTTGGGTAGTTTAGAT 40168 34 100.0 35 .................................. CAAAAAATAGACCTCTACGCGAGCAACACTCGCGT 40237 34 100.0 39 .................................. CACGACCCTGCCCTCGCCAGTTTCTTGACTGGTGTAACA 40310 34 100.0 43 .................................. CCGCTATGGGTTGTATGGGCAGTCATCAGGCATCATTACGGCT 40387 34 100.0 44 .................................. CCTTGTCGGAGGCTATGCTTCCATTCGCTATGCGAAGGGAGAAA 40465 34 100.0 39 .................................. CTTTTCCGACAGTCTTTGATATGATTGAAGAGGGTTACA 40538 34 100.0 38 .................................. CCAGACACACAAACAAGTACGGCAGAATGATTCTGCCA 40610 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================================ ================== 20 34 99.4 39 GTTTCCATCCCCGTGAGGGGTAATGAATTGAAAA # Left flank : TTTTCTGCTTCTACATAATTACCTTGGGAATAGTAAAAGGCGGCGAGATTATTTAAAGATTGGGCAACATCAGGATGTTCTGAACCTAGAAGATTTTTTCTGAGGGTTAAGGCTTGCAAGTATAACGGTTGGGCTAATAAGTAATGTCCTTGCATCCGATATAATTCGGCGAGGTTATTTAAGCTATCACAATATTCAGGATTTTCTGTTAGCTGTTGATGTTTGCCTAGATTTACAGCTTGCTGGGCAACTATTAGAGCTTGTTCTAGGTTTCCTTTTCCTGCTAATTCGACAACTTGTAAGTTAAGTTGATTGAGTTGTTGTATAAGTTTTTTCATCTGCTAGTTCCAGATGTTTATATGTTTTTTTCGCTTTTATTAATTACTTATAGCACTCCTAAATCATCAGTGAACAACAAGATCCCCGACTTCTTAAAGAAGTCGGGGATCTGAGCCTCTCCATTTTCACAAATCAAATAGGATTGGTATATCTTATCTAAA # Right flank : ACCCTACCCTTTTAGAAGCCTTAGCCAGAGAGGGTTAGAGATAGGCATTTCTGAGGGGGGTCTAATTTACCTGTCAATAAACACATATTATTGAGAATAGCAGACTATTAGACTATCCTCAAAAGCTTATACAGTAAGCTATCTGAGGGGGTCAACGAAAAAATAAGGGTTTCAGCCATTGCCTGACCCCCGCAGGTAAACTTATGTAAAGAAAGTCAAAATCAATACTTTAAGTTTCAGTTGGAAACTTGATATTAAATTTTCAAGGTTCTGTGCTTTTAAAGGGCAGTATAACAAAGTACTTGAAATTTTAAAAGCTTCAAACATTAACTTTTCTATCATGCAGTAATCAGATAATCTGTATGCCAAAGTTGATATTCTCCGTGTTTGGTCAGATATTCTAGTAACTCTGTCAAATGACGAGCCTCTAATTCTAAAACCTCATCATTATCTTGGGTTAACCAGTCTAATTGAGGTACTTCTTTGGTAATGATGGCGAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATGAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 2 47050-44901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000006.1 Nostoc sp. FACHB-190 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 47049 35 100.0 36 ................................... TCAAGTATATCAACGTGGTGATACTATCTTTATTCG 46978 35 100.0 35 ................................... TGGAATCCCATTGATCCTGAGAGTATAAGGATCAA 46908 35 100.0 36 ................................... TTTTTTGGGTGGTTTTTCTTCGTTAGTTGCAACAGT 46837 35 100.0 38 ................................... CGGTAGGATTCCAGATTAGTAAAATGGATGGCTGTCAA 46764 35 100.0 36 ................................... TTCTCATTAGCAGTTGCAAAATTGCTAGAGAGCAAT 46693 35 100.0 35 ................................... ACAAGTATTGGGTGCGTTCGCAATTACGGCAACTG 46623 35 100.0 37 ................................... ACTAGTCATGAACTTAAAGGTGACGATTTTTATCGGG 46551 35 100.0 39 ................................... ACAACGCCATTAGGTGTTGCGACAGTCGAATTAATGATG 46477 35 100.0 36 ................................... CGTGGGTAATTCTAAATCTTATTTTTATTGTTTTGA 46406 35 100.0 38 ................................... ATTTTCCATTGAGGCTGACGGAATGCCCAGCCTGTCAG 46333 35 100.0 41 ................................... TTCAGGTGAATCAAATTAAAGTGGAGGAGTGGGAAGCGAAT 46257 35 100.0 41 ................................... CCGGCACCAATTCCACAGGACTTCCCAAGTCCAATGGTATT 46181 35 100.0 36 ................................... ACTGTTTCGCCGTCCAAAACACAGACGTTGGATGAT 46110 35 100.0 35 ................................... AAAAGGATTTGTGGAATATTAAAAAACAAGAAAAA 46040 35 100.0 37 ................................... TCGAAGCTTTCGGTGCCGAATACAAAAAAGGACAATG 45968 35 100.0 41 ................................... CGAATCTGGTCTGAGAAGGAGCAAGTTGTTGTTGGGTATAC 45892 35 100.0 35 ................................... ACTGTTGGGTTTATTCTCTGGCATTGGATTTTTCT 45822 35 100.0 37 ................................... TTGCAGGCAAAGGAGATTTTTACATTAACATAAAAAA 45750 35 100.0 39 ................................... GAGCAGCAAAACAAGACGCTGTTCAAGAAAGAAATCGAG 45676 35 100.0 40 ................................... CCAGAGGGGACAAGAACTCTTGTTCACCGTACCGCTTCTA 45601 35 100.0 37 ................................... ATTTTGCATCAATGCAGCACTTGCCTGATGCAGATCA 45529 35 100.0 40 ................................... ATGATTCTCTTACAGGAAATCATTTTTCAAATCAAAAACA 45454 35 100.0 37 ................................... CTAATTTTCTGGTTAGCAACCTCAGAAAATTAGCACA 45382 35 100.0 38 ................................... CCCTTTAATTTTGCTAGGCTTGAATGGTCAAACTATGG 45309 35 100.0 41 ................................... GGGTATGCCAGGTATGGGTATGCCAGGTATGGGTGCCAATT 45233 35 100.0 39 ................................... AATTGGCATTTCCTGCTGCTCAGATGCACGTTATAAATG 45159 35 100.0 38 ................................... TTCGCAATCAAGGTGCATTCGTATGCACTTCTGAGGAG 45086 35 100.0 41 ................................... TATTAAGGACAGTATCCCTAGTAATGTTAGGGATTTATCTT 45010 35 100.0 40 ................................... GAATTTGTTTTGGCCGTTGGCCAAAACAATTCAATTGAGA 44935 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 30 35 100.0 38 GTTTCCATCCCCGTGAGGGGTAAAGGATTTAAAAC # Left flank : CTTTGTGTAATTAATTATGTTTAACTACTTAGTATCCCAGACTTAAGTATATCTAAAATAATAAAGTGATTATTTATACTTTTTGTCGATTTAGCCAAGCTTCGAGTTCAGCCACTTCTGAGAAATTTAACAACTCTTCTCCCCATCCAGGGGTAAAAGCACAGTCACAGGTAAAATAGATGTACGCCAAGCCCCCATCCCCAAACCCCACAAACCACCATGAAACAAATTACCCTTGCAGAACTTCCCGAAACTGTCCAAAACCTAATTAACCAAGCTCAAAAAACAGGCGAACCCCTCACTATCATCCAAAATGGTGTCCCCTTCGCCATCATATCCCCCATTCAGAAAAAATCACTCCTGCAAACACTTTCTACCCTTGAACCATTGGACGAAGACTTTGCCGACGTGGACGAAGGATTATTGCCCTTAGAGGGTGTTTGAAAAAAGGAATTAAAACTCAATGAGTTTTTGCAAATTTTAGGAACCATCGGCGTAAA # Right flank : CCTACTCTTACAGAGAGCTTACCAAATAAGGCTTACAGAACCATAAAACTGAGGGGGGTCTATTTTTAATGTCAACAAGCCATAGTTATTGACAATAAAGCAGTTTCAAAGCCACTCAAACCCTTATACAGTAAGCCATCTGAGGGGGTCTACGAAACAATCAGCTTTTCAGCCTTTGGATGACCCCCTCAGTTTACATTTCTTTACAAAATGGCTTTAGGAAACTAACCATGTTGATTGAATTTTCATGGTGCAGGCGTTGGTATAAACAATACCATACTAATCAACATGATGCAATTTCTTTATTAAGGTTTCCAAATCATTGGTCGATAGATTTTTACCTCTCCTGTCAGACAAGCTACGTACTCTCGCACTTGTAACTCTAAACACCTGCGAAAACTCACCTTATATCCTGTGTTGGGGTGCGTTAACTCAGACTGCAACTTTTCTTCCCAGTGCTTGAGAAACTTTTTCAACGTATGGGGTTGTAGATATACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGATTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 53026-52268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000006.1 Nostoc sp. FACHB-190 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 53025 35 94.3 38 A...T.............................. AAGATGAAATCAACAGAACAGAAGAAGCAGAGGTTTTT 52952 35 100.0 38 ................................... CTGAAGATTTATTGTCCCTTGCGTGAGCAGCAAGCTGA 52879 35 100.0 37 ................................... AGATCAAAGATCCAAAGCAAAAAGATGCTGCGGAAAT 52807 35 100.0 37 ................................... TGGTTTTTGAGTTAGTGATAGCATTACTGAATGAAAA 52735 35 100.0 40 ................................... TGCAAAGGCGAAACAATACCTTGCAAGTTAAGGCAAATTT 52660 35 100.0 39 ................................... AGCAAAATATCATGAATAGAATCAGGAGCGGCTTTGGTT 52586 35 100.0 37 ................................... TTTTTCAAAAAAAATTAAAACCATCGTAAAATAGGCA 52514 35 100.0 35 ................................... AATTTTTTTCCGCCACTCTCCCAGAGTTGACAGAA 52444 35 100.0 36 ................................... GACGCGATAATTCTATCTCAGCTTGCTAAATGCAAG 52373 35 100.0 36 ................................... GAAGAAAGGGCAGTTTATTGGGAAAATGAACATTCT 52302 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 11 35 99.5 37 GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Left flank : TTATATGGTGGCTGCAAACCTAAAACAATATCTTCTTTTTGTACTCCCATCTCTAATAGTTCTTGTGCTAAATCCACATCTGTCATATTCTGCTGAATCCAGATTTTATCATTTTTAATATCAAAATGAATAACAGTGTGATACACACGACTTAAACCATTCCACCCTATACGCATCAATTGATAGTGGTCGTGCATTGTATCAAATATTAATTCGTTTTCAATCTCTTCACGTTGAGGTTTATACTTACTGTGTTTTGCTAATATTTCTTGGATAGATTGGCGGTATTGCTCTAGTTTGTCCATCTCACAATCACTTCCATAATTGGATCGTATATTATTAGTTTTAGTTGATGTCGCCGCACGGCAATTTTAGCAAGTTTAGTCTGAAAAAAGGTTTCATAAGCATCAACTGGAACTGCTAAATATAACTGACGTTCTGGTTCGTTTTCTTCCAGTGCAATTTGATTCGCATTATTACCCAATCCAGTAATTGATGAT # Right flank : CCTACCCTTTTGGAACACTTGCTACAACTGGGTTTGAAAGTGCCATTTTCGCGGGGGGTCTGATTTTACTGTCAATAAGCATACTTTATTGACAATCAGACACCATTACAGACACCTCAAAGCCTTACTGAGTAAGTGATTCGCGGGGGTCAACGGAAGAATCAGGGTTTCAAGCATTGCCTTACCCCCGCGAAAAATTTGCGTGTGAAAAGTAAAAATCAAGACTTTAACTTTCACCAGGAAACGCAATATTAAGTTTTCAAGGTTCTGCTTTCTTGAAACAGAGTATACCAAACTACTCCTCAGTTTTTAAAGCGCGTCTTGCCAACTTGACATAAGTCTTCACTGTTTCATAAGGCATTTCTAAATCTTCTGCCACTACCTGCAACGACTCTCCCATTTCCCGCCTTGCTAAAATTGTCGCCCATTTCGTGGCTATTTCATCTGCTCGTTCTCCACCTGTTCGTTTGCGTCGTGCTTTAAATATCTGTGTTAAATCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAATTAATTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 701-1245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000007.1 Nostoc sp. FACHB-190 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 701 36 100.0 35 .................................... TACGAACTAGAAGATGCACAATTTGCTCGTGTATT 772 36 100.0 38 .................................... CACCCCAAAGATATGCACTTTTTCAATCCCCGCTTCTG 846 36 100.0 36 .................................... CTCCCTGAAGATGTTCAATTGCTGATCAAAAGAGAG 918 36 100.0 35 .................................... CAGGTTGACCAAGCCCAGGATGTTCACTGCATCGC 989 36 100.0 38 .................................... GAGCGATCGCCCTCCTAATGCTGCGATCGCTTTTCAAA 1063 36 100.0 36 .................................... GAATCTACAATTCAATCTGTACTAAAAATACTAGAT 1135 36 100.0 39 .................................... GGAACGTCTTCAGGAAGAGAAGAAAAAGCAGCGCGAGAA 1210 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 100.0 37 GCCGCTTCTATTCTTTAGGGGCGGAATTATTGGAAA # Left flank : AAAGAAGCCGTTTGGCAGAAATTCACAGGTGGTAAACAAGGAACACTGTGGTACTATCGCAGTTTATTAGCGGTGTTTCAAGAAACTGAGCCAAGTTTTCTCACTCAAGAATTAGCAAGAGCATTTCAGCTATTAGAGCAATTAGCTTAAAATTTAATTGCATATTTAATAGTCGTGAAAAATCTGTGTCAGGATGATGGCGATCGCTATTTTTATCTGTAATCTGACTGCACAGTTGACATACTCACTGGCGCGGATGAGTGGGTGTTTAAGAATTTGAGGCAATTTTTGTGGTTCAAAGGCTTATGTCGTATAGCTTTGAGGTGGATGGCTACAATATGAAGTTCCGCGCAATTCCTAGAAGCTTTGCCTGTTATGCTTTTGAGGCAATTTACAAAGGTGATGTCTTGACGAGCCAACGGCTAAAATGCTACTTTCTTTCTAGTCCCGCGCAAAGTGGCTTTAAAACCTTTGCAATATCAAGGTTTCAGAAGCCCGCA # Right flank : ACGTTGGCGCTGATAAATGTTCACTTTTCGACACCACTCGCTAAATCCCCAAAACCCTATACTTTTCGTTAAGTGGTGTCGATTGCTTACTGGGTAAGGATTTGAGCTATGTACTTGGTTAAATTTCGCCCAACATTTATAATGTTCTTCAGAGTGGTGTCGATTTGGCGGCTGAAACCCTTACAGGGTAAAGGCTCCTAGACGAACTCTTTACCGATTAACTCAAATCGGAATTATTGGAAACATCATCTCTTTCCTGAGCGTGTTGTGTGGCTGCGCTTTACCGATTAACTCAAATCGGAATTATTGGAAACGCCTGGTAGACCACGATGGTCGGTGTAATGGAAGTCAAACTTTACCGATTAACTCAAATCGGAATAATTGAAAACACTTCTACTGGCTGTTGTGGCGATATATCTCGCCGAAAGTGTTTTGATTCCTCAAATCAGAATTTGAGCGGTTCTCAGTTGGATGAAGTACATTTCAACCCCACCCCCAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTTCTATTCTTTAGGGGCGGAATTATTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 245543-246173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000007.1 Nostoc sp. FACHB-190 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 245543 37 100.0 38 ..................................... CTTTGATTATTTCTTTGGTTTCAATCTCTTCAAAATCG 245618 37 100.0 34 ..................................... CCCCTTTTAAGTCAATGTGCAGGCAGAATATTTA 245689 37 100.0 41 ..................................... ACAGAAGAGGTTTGCCAGCTTATGGGCAACCTTGGATACCA 245767 37 100.0 41 ..................................... TAAGGGACGCGCCCAGGCGATCGCGCTCACTCCTTTTACTT 245845 37 100.0 34 ..................................... ATTTTTGCAAAATTTCCTCATCAGTACGGTTGAG 245916 37 100.0 34 ..................................... GATAGTTGCTATTTACCGTTCCGTCCTAATTCGT 245987 37 100.0 35 ..................................... TCTCGCAGGTTTGCCACCGGGATAAGCCCTGATCA 246059 37 100.0 41 ..................................... TTCAATGAAATTCCATTCTGGTTGAACGAATCGCCTTATTT 246137 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 100.0 38 GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Left flank : TTACTTTTTGGTAAATGGCGTATTAACAGCGAGTGGGAAAAAATTTCGATTGAGTTTAAAGATGATATGACTTATACCCAAACCAAAACACAGACATATATTTTAGCTAAACCTAAAGAATTATTCAGTGGTGATAAATTTACTGGTGTATGGTATGTCAATTATGGCAGATTATTTTTAATTGTTAAAGCTGCGCCCCAATCTATGTTTAATTTCAGTTTACCAATATTACATAAAATTAATTTGGCAGATATATTAATCACTTTCATCTCTTTGTTTACGGCAGAAAAGTATGAAATAGTTAAAATTAATCAGACTGAATTGATTATGAAAGATGAAAAGGAATCAATTATTGGGAAGAAAATAATTAGGAATGCAAATTTTTAGAGTTATACTTCATTTAATGTAAAGTTTCACGTATATTGATCCCCCTAAATCACCCTTAGAAAGGGGGACTTTGAAGCATTTTCCCTTGTAAATGTAAGTCCAACTCTAAACTC # Right flank : CTGCGGAAGCCGGAAAGCTAGTGTTTATTTGGTTTTCAAGGTTCAGTTTCGCGGATGGGTTGATTATAACAGTATCAAAAGTCAGTTGATTTGAGGAAAATGGCTGAAACCGTTGCTGTACAAAGTGCGCGGGTGATTTTAATTGAATTTTTCGGCAAAAGCTTGTGCTGAAAGGGAGACAGCCATTTTTCCTCAAGGCGAATTTTTTACACCTACCCATCCGCGAATTAGGCAAAGAAAATGCTTTCGTCGCGGGGTTGTTCGCCACCGATGCGTTCGATTTTATCAAAACAGCAGGCGCAGAGAAAGTAAAAGCGGATGCTGTCGGTATCTGGTTTAATGAGTTTGTGCAAACGCGATCGCAATTTGGCATATTGAGTCTCGGTAAGCTGGCACTCAAACACACTGTACTGCACCCACTGTCCATAAGATTTTAAAATTTTATGGATTTTCGTCCGGCGTTTATCTTCTGGGACATCGTAAGATACAATGACTTTCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 123562-123153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000008.1 Nostoc sp. FACHB-190 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 123561 37 100.0 35 ..................................... GTAAGTGCTTGATATATTCACATACCCTAGAGTGT 123489 37 100.0 36 ..................................... GGGAGCGATCGCACTTTAAGCAAACTAAGATTTAAC 123416 37 100.0 38 ..................................... AACTATTACTGATTTGCTTCTGAACAATAAAATATCTG 123341 37 100.0 35 ..................................... TTGTGCTTGGTGCGATCGCATTTATCCCGCACAAA 123269 37 100.0 43 ..................................... ATAGTAACCTTGTAAACTATCAAGTCTGCCTAACATCATTTCG 123189 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 6 37 100.0 38 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : GTTGTGGCAAAATCTGGTGGTAACGGGAGAATTTACAGCCTTAGAATTATGGCAAGCTTTAAGTAGTAATCCCGCAAAATGTTTGGGACAGGAATTAAACACATTAACTGCTAATCAAAAAGCCGAGTTAACTTTGTTTGACCCTTCGCAAACCTGGAAAGTGGAAAGGAAAAATTTACAGACACTTTCGAGTAATACACCTTGGATGGGGCGAGAATTACAAGGTCGGGTGTTGCAAATTTGGTGTTAAATTAATTTTGGTAGTTTTGGCGATCGCGCGGATGGGTAGGTGTTCAAAAATAGCGGTTCGGGAAAATGGCTGTATTCCTTTCAGCACAAGCTTTTGCCAAAAAAATAAATTAAAATCATCCGCGCACCTTGCTATGTATAGATTCCAGCGTTTTTGTGTCAATCAATTTGCATTATGCTGTGTTATAATTTTTCCATCCGCGCAACTGAACCTTGAAAACTTTATAGGACAACGCTTTCTGGCTCCCGCT # Right flank : TAAATGACGGTGACGCTACATAATCGGTATAGAAGATTGCAATTTCAACTAATCCCTAAAACTGCTCATTCTTACCTAATAGGACTTACGTAATACCAGTTCTGCATGAAGATGCACAGAATCTTAAGAAACGAACCGCCAAGAGCGCCAAGAGCGCCAAGAATCTAGAGTTTCATTTAGTGCAGCTTCATATTAAATTGGTAAGCTAATCAGCATTTAAGCTGCACTATTGAAATTGTACATAAATGACTTAAACTCTCTCCTCTGCCCCTCTGCCCCTCTGCTCCCCTGCGGTCTAAACTGCAAACTAAGTGCTTAATAGCTTATAAGTGTCACGATTGGTAGTTGGTGCGTGACGCTATAAATTTGATGACTACGTTTAAATCTTCTCGTTGCGTCACACACCCTACAGAAAAAATATGCCAGTTACTTCTTACTCCTTATTTCGCTTGCGCCTCAAGTTGTCTCACCACGGTTAACGCCGAGTAACTCACGCCAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 200112-200872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQW010000008.1 Nostoc sp. FACHB-190 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 200112 37 100.0 33 ..................................... AATGAAGCTCGAAAACTTGATTGGACAGAAGCG 200182 37 100.0 34 ..................................... ACTTTGATAACCTTTTTACTTACTAATGTAGGAC 200253 37 100.0 37 ..................................... ATATCTTCTAAGATTATAACACAATGATACCACTAAT 200327 37 100.0 37 ..................................... AGAAACAAATGAGATATTTAAACTTACATTAAGTGAG 200401 37 100.0 34 ..................................... TTGAACTCTGACTGATTTGCATCATTGCTTTTAC 200472 37 100.0 35 ..................................... GGGATGATGGCATATACTATCGTGGCATTTTCGAC 200544 37 100.0 35 ..................................... GTACCTTGGGTGTCATTTCCTAATGCGGCTGTTAA 200616 37 100.0 37 ..................................... TCCTTGACGATACCAAGTATGGGGTCTTTGATGTCAA 200690 37 100.0 38 ..................................... TTCAATTTGAGCTTTTGCTTTGAGGTTTTTCAAGTGAA 200765 37 100.0 34 ..................................... ATGAATGCCTGACGCATATCAGGAATCATGTTGG 200836 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 100.0 36 ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Left flank : GCATTATTAATGTATGATATGCTGACGCGGATTCAAAACTCCACATTACCCGGAAGACCGCGTTTAGGTTTGCGCCAAGTAAAAATTACCGTCGGTGAACCAATTTCTGTTACCGAACGCTGGGAAAAGTCCCAAAACAACCGTCAAGCAGCCAGACAAGCAGCCAGTAATTTAACCAAAGACTTGCAAACAGCATTAGAAAATTTGATTAACTAGTACAACAAGGAAAAAGGAAAAAGGCAAAAGTTAAAAGTAAGAACTGAATTTCCTCAAATGCGCGAATGAGTAGGTGTAAAAAATTAGGGTTTCACCAAAATGGCTGTATTCCTTTCAGCATCAGGTTTTGCCGAAAAAATAAATTAAAATCATCCGCGCACCTTATACAGTATAGGTTTCAGAGATTCAGTGTCAATCAATTGACATTATTGGGTGTTATAATCAACCCATCCGCGAAACTGAACCTTGAAAACTTCATAGCACAAGACTTTCTGCCTCCCGCT # Right flank : CTTTATTCACAGTTATAGCAATTTGAAAGAAGAATGCGACAGATATAAATCAGAAAAGTCTTACTGGAGCTAAATTTATTAATTGCAAATTGCAAATTGCGAATTGGTATTACTTCTATACATTGCATTGTTGATGTACAGATAATAAAGTGCATTCCCAAACTAAACGCGGTTGGGCGTAAACTAAAAGTGCCTTGCGTGCCTGTTCTAGCTGATTAATAACTCCTGGTTGATGCCACTTTTGCCAATAAGAATGTTGTAGGTAATCAATTAACCATAGTTGTGATTCTGTATCTAAATCTTTGTCAATTGTTTTAGCTAGTTCTAAAGCATGGCGGGCAGATTTTGGGGCGGCGGTGAGGTGTGAGAGTAATTCAGAGGGGATAACTTGTAATTGTTCATAACAGGCGATCGCATTTCCCGGACTGCCAGCCGCTATACTCAACACAGCCGGATGTTGCAAAATTTCTTGATGATTTGTTTGCTGCAATACTTGACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA //