Array 1 1834223-1833705 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPNU01000001.1 Edwardsiella piscicida strain ACC35.1 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1834222 28 96.4 34 ..C......................... TTTGCGCCGCTACGATTTGCTCATAGCTCAGGCG 1834160 28 100.0 33 ............................ TGACTTTATAAGAGCCTCAGAAATAGAAATGAT 1834099 28 100.0 33 ............................ CAGCATGGAAATTAGGTTGGCGTCCTGACTTTG 1834038 28 100.0 33 ............................ TACTAGAGGCTGGTAATATTTTGTTGTGGGTAA 1833977 28 100.0 33 ............................ CGACGTGAAGAAGATGTTCACCAACCTGGCATC 1833916 28 100.0 33 ............................ CCTAATCAGTAGTGATGCTATCACCATGTCCAG 1833855 28 89.3 33 ..C.........TG.............. CGGCGCCCACCTGGGGTATATCTTCTACAGTAC 1833794 28 92.9 34 ..C.........T............... TACATCGCCAAAAATCTCGACGGTTACGCGCTTG 1833732 28 92.9 0 ..C........................A | ========== ====== ====== ====== ============================ ================================== ================== 9 28 96.8 33 GTTTTCCCCACGCCTGTGGGGGTGTTTC # Left flank : GAGGCGAAGCGTTTCCCAATGCCAAGAAAATCATGTAGAGCGCGAGCGTTACAAAGTAGAACGGATTCATTGGAGATAGTACCGTTGAAAACGGGGATGAGTTGACTGGTCATTTTTTGCGTCCTAGTAGATTGTTGATTACCCCTGTTGATAAGGGTGGTCGGGTACTTCAACACCGCTACTAGACGGCCTGTAGTTTTTCCCAATAAGTTGGGTGTTATATGTACTACACGCTACCCGACCATAATCTATGGACGTAAAAAACCGCATATCTGTCGGGTGCGGAGCTCCGCTAGTAGACGGTGTGTTGAGCACCTGAGCGGACTATACCCCCGACGCCGCGGGTAAAACTAATTTCGATTTATGATACTTTACTTACAAATCATAGGAATTCAATGAATCATTCTAGCCTGACCATACAGAGCCCCATCTGGCTATTCGACCAGTAAACCAACCACAATCTGTAGCTGGTTTAGTATGTTCTTTAACAATATAATGGG # Right flank : ATAGGAAACTGGCCGAGTCACATATCAAGGCCAATAAAACCAGGCTGCTGGCTATGTGGCAGATGGCGGTTAATGGGATGCATCCTTGGAAACTGTAAGAGGCAGCTATCTTGAAAATTATTGATGTGGATGTGGTCGGCGACCATGTTATCGAGGTCGAATTTAGCGACGGCTTCCGTGGCAGGGCTGATTTAGCCGCACTGTTCAGCAAACCGCCCTTCTCTGCGATCGCCGACGTTAACCGCTTCTCCCTGACGGCCAGCGGCGTGCTGAACTGGGGAGATGCCGAGCTTTCTGCCGATACGGTTAGGCGCATGAGCAAAGGCGCGGTGGTATCGGCATCCTCACGCTCACTCACGCCAGAAAATGTAGAAGCGATCCTCCGCCAGGCCACCTGGGAATCCATGACCGAGGGGCGCCCAGATATTTTGCAGGCCGCGTTAAGGGGATACGCGGAGCAGCTGGGCCACGCGGACGTCATCAAAAGGGCCGGGATTGCC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACGCCTGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2822124-2821119 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPNU01000001.1 Edwardsiella piscicida strain ACC35.1 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2822123 28 100.0 33 ............................ TATCCTATCGGCCGCAGCGCAGCATATGGAAGA 2822062 28 100.0 34 ............................ TCGCTGACGGTATCAAGGCAGGCGTACCTGTTGA 2822000 28 100.0 33 ............................ CTACTTTAGCGTCCAGCGCGAGCTAGAGCAGGG 2821939 28 100.0 33 ............................ TAACGCGCAGTGCTTCATGCAGAAAGTAGTTGT 2821878 28 100.0 33 ............................ TTCGTTATCGCAAGTGAAGCAGTAAAGCGCGAC 2821817 28 100.0 33 ............................ CGATCTCACCTATGCCGGCGGCGAGGTAATTTT 2821756 28 100.0 33 ............................ TGAGCTGCGTCTGCGCAGGATCAGGGGTTGGCA 2821695 28 100.0 33 ............................ TCTGACGCCCTCCGAGTTGGTCGGGTGCGCCGA 2821634 28 100.0 33 ............................ CCTGTTTATGTGCGAGTTTGTCGACGATAAAGC 2821573 28 100.0 33 ............................ TGGTACGAGCCGCCGGTCAGCTTCTCCGGGCTG 2821512 28 100.0 33 ............................ TCGGGATCTGTATGGCGCCGGTGCCTTTTTTGG 2821451 28 100.0 33 ............................ CATACTGTCGGTAAGGCCGAAAAATCAGGGTGC 2821390 28 100.0 33 ............................ TGAGTGGTTCCGTGACCAAAACCTGATGGAGCC 2821329 28 100.0 33 ............................ TGACCGCGGTTTCTATGTCGATGTCGCCTTGGC 2821268 28 100.0 33 ............................ CGATATGCCACTCACCGTTGCGGTAGTTGTCCG 2821207 28 100.0 33 ............................ TTGAGGATGAGGTACTGGAGCAGATGCCGGATA 2821146 28 89.3 0 .........................GGA | ========== ====== ====== ====== ============================ ================================== ================== 17 28 99.4 33 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : GAATCTCTGTATCGATCTTGCCTTCTCCCTGACGCGTGAGATGGCGGGGCGTTATGAGAAGGCTCTGGTTTCATCTCGTTTTCGAGAGCGGGTGATAGAACTGAATTTGCTCGCGAGTGTAGCCAGAGATATACCACAGCTACTTGGAGGGGCAAATATTGATGCTGATAGTTCTCGCTAACGATTTACCTCCAGCAGTTCGAGGACGAATGAAACTTTGGTTTATTGAACCGCGGCCAAATACCTTCGTTTCCGGTATCAAGGATTCGGTTGCTGACACCGTGATCGAATACCTTTATCAACACTGCTCACCGGCAGCGGGTGTGGTGATATTTAAAAGCATTGCTAGAGCACCGGGGTATCAGATCCATACCATAGGATCACCGACCAAGACGCTCTGTGAGATAAATGGCCTGCAGTTGGTGGTAGAGAAGCGGCTCAACCAGTAAGTCAACCACAATATGTAGTTGGTTTAGTATGCTCTTTAACAATATAATGGG # Right flank : CTGACCCCAATACCTTTCTTGCCTCATCTCGTTTAGTGCGAGCTTCCGCAAGTGTGATGTCCGGGTAGGTTCCGAATGAGAACTTTTTCTCTTTGCCGGCAAATCGATATTTCATCCGCCAGTATTTTGAACCGTTAGGGTTGACCTGGAGATACAGTCCACCACCGTCAGCGAGTTTATAGGCTTGGTCTCTGGGCTTTGCAGTCTCGACCTTACGCGCATTTAAGGTCGTTTTTGGGGCCTCATTTTTCATTGAACAGGATAAGCCCCCACTAAGGCCCCCAAACGTTTATAGATTCACGTTGAGATGGGTAGATATCCGTTGACGTCGCATAGCCAGAAAAGAGGGTTTATCACTGATTATAAGAGGGTTTTATTGAGTTTGGTCGATGTCAGGAGAGGGGGCATGGCGTTCCCTGCATACGCCGAAGTTGATATGCAGGGATTTGATATAATTGGGTTTTTATGTGTTCGTTAAACTTTTTACCCGCAATTTTACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //