Array 1 237491-236594 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJOT01000003.1 Paenibacillus sp. 79R4 NODE_4_length_441985_cov_25.9595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 237490 32 100.0 36 ................................ TTTGATCCGGCGCTGCTGTTAGCAGAGGAGCCGGGT 237422 32 100.0 37 ................................ CAATACATTGTAATGATGCTCTCTTTCTGCCGCCGAG 237353 32 100.0 35 ................................ TCATTATGCCACTTATCTATGTTGTTGTTATAACG 237286 32 100.0 34 ................................ TCTACGCCAACGATACCAATGCGACCTTGACCAT 237220 32 100.0 35 ................................ TTCTCATCCTGCAATGCTTGCTTTTGGTCTTCAAG 237153 32 100.0 33 ................................ CTTTACTTTTGTTGCTCCCTGAATCTCCTATAC 237088 32 100.0 37 ................................ TCCTTTCTGAATGTAATAAATGTGTACCGGACCGGAT 237019 32 100.0 33 ................................ CAATAACATTCAGTACATGAACATTGCCCATCC 236954 32 100.0 35 ................................ TCCATGTGCCAAATTATCCTTTACCTCTCTTAATA 236887 32 100.0 34 ................................ AGATCAATTCACGATGTCATACAGTCGATCTTTG 236821 32 100.0 33 ................................ CCGTCTCAGATGGATAATGCAACGGAGTTTGCG 236756 32 100.0 34 ................................ TGTACGGTCTTCGCGTTTAATGGGGTGGTACATA 236690 32 96.9 33 ......................A......... CCGTCAACTGGCGTGATCTTGCAGTATATTTCT 236625 32 87.5 0 ..........G.C..A.......C........ | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 98.9 35 GTCGCATCCTACACGGATGCGTGGATTGAAAG # Left flank : TCCGATTTTTCTGAAAGAGGGCTATATTGTCGTGAATTTTAACAGTGAGACGATACGCGATGGGCAGATAGACAAGCCATATTTACAGTATGTCTATGCTCCGCTGATGAATCAGTGGCAGCAGATGGAAGGTTTCCGGCGCAAGATTACTGATCCGTATGGGCGTACCTTCACTATGATGGATGGAGATATAGTCTTTTACCACGCTGATCAATCCAGCCGAGATGATTTTCAATCAATGGTAACTCATTAAGAATAAGTTGCCTCATTTTTATGATGAAATAGAGGAAATTTGAGCAGATGAGTTGAATATTATTTTTATAATATTTGTCAACAATTTGGTGCGAACCTCAAGCGAACATGAAATCCCTAGGGGATTCGCACCATGAATATCATTGTTTTTATCCATGATTGGATTAAAATGTAATTTGTTAACCCTACAAATTAATTAATTCAATAAGAAATTACCGATACGTGGACATTTTCTCCCCAAAATCGGA # Right flank : CCGTAAGGCCGCAGCGATTGAAAATAGCGCCCTTAAATCTTGTGTATCCCATTGGATGCGTCATTCAAACAACAAATGTCAAGCTAAACGATTCGCTTCAACCAAAAAGCTGATGCCCTTTTTTTCGGCATCAGCTTTTTTTCTGGATTTCATTCGGCTTTTTTATAGAATTACCAAATGCTTACGCGATTCTCGGGAGCCACGTACATGGCATCTTTTTCGGTTACTTCATAGGCTTTGTAGAACTCTGGGAAGTTTGAGACCGTGCGGTTTACACGTACCTTGTTCGCAGAATGGGTGTCGACGGTTGACATATACTTAGCGATTTCTTTGTTCATTGTAGTACGCCAGATTGTGGCATAACCTTCGAAATAAGCTTTGTAATCCGGATTTTCCGTTTTGGACAACACCTGAAGTGAAGCAGCCATACCGCCGAGATCGGCGATATTTTCGCTTACGGTCAGTTTGCCGTTGTTATACACGCCAGGAACGACTTCAAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACACGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 131618-132656 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJOT01000008.1 Paenibacillus sp. 79R4 NODE_9_length_307806_cov_26.9048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 131618 32 100.0 35 ................................ CCCCAAAGGCACCTACTGAGCCGTCCGGTATTATG 131685 32 100.0 35 ................................ TCCGGTTTCCCAGTCCACTTCGTGAACATGCTCTC 131752 32 100.0 35 ................................ AAGATGTCATCAGGTGGAGGAGTGGCTTTTTCCCA 131819 32 100.0 37 ................................ TTATTGTCAAGAGCAACTGCGAGTAATAGTGATATAC 131888 32 100.0 38 ................................ GCAAAAATTGATCAAACTTCGCTAGATACAACGCTCAA 131958 32 100.0 36 ................................ TTCATTGAATGCGCGATTCGTCTCGGCAAATCACAA 132026 32 100.0 35 ................................ TATACAAAATCTGGACAATAGTTGCGAGGATTATA 132093 32 100.0 33 ................................ TATGAAATCAACATGATATCGTCCGGCGCTCGC 132158 32 100.0 33 ................................ ATGGTGCATGGTCTGCGGTGGATCGCGCGCTGT 132223 32 100.0 35 ................................ CTGATATCCAAATGTTTAGTTACATCGGTCAAATA 132290 32 100.0 35 ................................ TCAAGTTGTCATCATGCAAAGGCCTTGTATTATCC 132357 32 96.9 33 .....C.......................... TTAATCTCGCTGAATCTTGACTTCATTTCTGTT 132422 32 100.0 36 ................................ CGGAACGGACATATGGGAGAATATCGTAGCCTTGGT 132490 32 100.0 34 ................................ ACTCAAAGTGTTCAGATTAACGATCGTCTGAAAT 132556 32 100.0 37 ................................ GATGCTGGGATGACGAAACATGAGTAATACAGTAGTT 132625 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ ====================================== ================== 16 32 99.6 35 GTCGCATCCCTCGTGGATGCGTGGATTGAAAG # Left flank : CGCGGCGATCTGGATGAATATCCGCCCTTTCTATGGAAGTAGGTGTAGACGATGCTAGTATTGGTCACATATGATGTAGGTACGACGCATAGCACTGGACAGAGAAGGCTGCGGCAAGTGTCCAAGTTATGCCAGAATTATGGACAACGTGTGCAGAACTCCGTCTTTGAGTGTGTAGTAGATGCCACCGAGTTTGAAGTCCTGAAAATGAAGCTGATCGATATCATCGACGAAGAGCAGGACAGCCTACGCTTCTATCAGCTTGGAAACAACTATAAGAATAAGGTCGAACATATTGGGATTAAGGAGTCCCTCGATCTTGAGGGCCCCTTAATCCTGTAGTGCGAACCCCAAGTGAACATGATTTCCCTGGGGGATTCGCACCATGAAAATCTTTGGATTTATCCATTAAAGTAATAAAATGTAATTTTATCGCCCCTGTGAAGTTAGTTTTTGTATAGAAAATGCGATTTTCGAGCTCTTTTTACTCGAAAATCGGA # Right flank : AGGATCTGCAGGTGGTCAACACACCAGCTTCTCTTAGTATGGAAGAGCTTGCTCTATAGAAGGTACGAGCTCTTCGCAGGTAAATAATTTGCGGTGATTACTACCCACTGAACTATTCGCTGCTGAATTTCCATAGAAACCAACTAAAACCAGACAGTCTTTAATTAAGAGTCAAACATTGAGTTGGCTAGTGGCATTATTCATTATGGTAGAATAGAGAAGAATGATAGAAAGTTGAATATAGCTCTAGGCATTTCAATGATTTTCGCATAACAATATGGTGCGAACCCTAAGCGAACATGAAATCCTTGGGGAATTCGCACCAAATATTTTTTTGTACCCATCCATTGGAATTAAAATCAATTTTCAAACGCTGTAAAGTTTTTAATCAATAAGAAAACACCGAATTTGTATCAAAATCGGAGTCACATCCTACACGGATGTGTGGATTGAAAGTACATACTCCTGCCCGTTTTGCTTCACCAGGAATGGTCACATCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGTGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 133080-133576 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJOT01000008.1 Paenibacillus sp. 79R4 NODE_9_length_307806_cov_26.9048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 133080 32 100.0 35 ................................ TACATACTCCTGCCCGTTTTGCTTCACCAGGAATG 133147 32 100.0 34 ................................ GATTACGAGTACATACTGATTGACTGTCCGCCAA 133213 32 100.0 34 ................................ TTTAAGGTGTTTTATCATTTGATCCATCTCTTCA 133279 32 100.0 35 ................................ TCCGGACATAAGGAAATGATCGAACAATTGAAGTT 133346 32 96.9 35 ........................G....... AATCCTAGCCCTTCCTTGGACATATGTTCAAAATC 133413 32 96.9 35 ........................G....... AATCCTAGCCCTTCCTTGGACATATGTTCAAAATC 133480 32 100.0 33 ................................ GATACCTAAGCTGAGATCCTCAATCGCTTTCTT 133545 32 96.9 0 .............................C.. | ========== ====== ====== ====== ================================ =================================== ================== 8 32 98.8 35 GTCACATCCTACACGGATGTGTGGATTGAAAG # Left flank : ATTGAAAGGATGCTGGGATGACGAAACATGAGTAATACAGTAGTTGTCGCATCCCTCGTGGATGCGTGGATTGAAAAGGATCTGCAGGTGGTCAACACACCAGCTTCTCTTAGTATGGAAGAGCTTGCTCTATAGAAGGTACGAGCTCTTCGCAGGTAAATAATTTGCGGTGATTACTACCCACTGAACTATTCGCTGCTGAATTTCCATAGAAACCAACTAAAACCAGACAGTCTTTAATTAAGAGTCAAACATTGAGTTGGCTAGTGGCATTATTCATTATGGTAGAATAGAGAAGAATGATAGAAAGTTGAATATAGCTCTAGGCATTTCAATGATTTTCGCATAACAATATGGTGCGAACCCTAAGCGAACATGAAATCCTTGGGGAATTCGCACCAAATATTTTTTTGTACCCATCCATTGGAATTAAAATCAATTTTCAAACGCTGTAAAGTTTTTAATCAATAAGAAAACACCGAATTTGTATCAAAATCGGA # Right flank : GTCTGTGAGGGAGAAAACGAGAAGCGGGCACTTCTCGTCAGACCTGACACATATATTGATGGATCTATAGTTTCAAATATGTTTTGACCGTTTTTGTCACATCCCCCAGTAGCTGCGCCCATTCAAACCCTGCTATAATATATAAAGTTACTAGTAAATATATAAAGAAGGTCGTTCAGCATGAAGAAAATTGAGAGATCAGCGGTTGAGCAGGAGCTTCGCAGATTTGTTGGGGCGAACGTTTATGTGCATAGTGAGGCGACGTCGTATGTGTTTGTCCGTAATTTTACGGTGCAGTTAACGGAGGCTCATATTGCCGGGGAGGGGCCGTATCGTGTGGCGCTTCGCTTCAACGGTGACGGTTGGCTTCGGATGGAGGCGCTGACGGATTATGAGGTAGATGATCAAGGGCGCCTGCTATTGGCTGGGTTTGATAACAAGGGGCGAATGGATGTCGCTCTTCATTTGGGAAAGGAGGCTTTCCCGGAATGAACAACCCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACATCCTACACGGATGTGTGGATTGAAAG # Alternate repeat : GTCACATCCTACACGGATGTGTGGGTTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCACCTCCTACACGGAGGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.50,-7.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //