Array 1 373105-374124 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074588.1 Pseudoalteromonas piscicida strain 2515 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================= ================== 373105 29 100.0 32 ............................. TTCGCAGCGGTGGATCTTGGTATCTACGAGAT 373166 29 96.6 32 ............................A TCAACTCCCAGAAAGTGAGTTGTATAAAAGTG 373227 29 100.0 32 ............................. GGATTGTATTGGCATGAATGGTAAATGGTTAA 373288 29 100.0 32 ............................. CACTGTTGGCCGCTGAGGGCGAGCCAGTGTCG 373349 29 100.0 33 ............................. CAACCCACAACACCGCCACCTATTGCGCTTAAC 373411 29 100.0 33 ............................. CTGGGCAACTTTGTCAATCAAACCGCCTATTAC 373473 29 100.0 32 ............................. ATGGAACTAATTTACCGTTTGATATTTCAGAT 373534 29 100.0 32 ............................. CAACAAACCGCAGAACAAGAGGTTGTAGAGCA 373595 29 100.0 32 ............................. TCGGGTAAGTTAAATCGTGATCCGCTATCTGG 373656 29 100.0 32 ............................. GATTGCATCAGCAATATATTCACTTTCTTATT 373717 29 96.6 32 ............C................ TAACAAAGCACCGCATTACAGGTTTTGAGACT 373778 29 96.6 32 ............C................ GTCAAGGATGAGCTGTGGCTGGAAGCGGTTAT 373839 29 96.6 32 ............C................ GCCGATGGCGCAGAAGGTAAAGACAAGCAAAT 373900 29 96.6 32 ............C................ CGGGTTTCCGTAGAATTGGATGCTGACCCGCA 373961 29 86.2 105 ............CA.T............T GAGTTATTCAGGTCTGAATCATGTGCTGTATTCGTCCGTGAAGCAGCATCCCTCACGCATCCATGCGCTCACCTTAGCAGGCTGTGAAACGGTGTTTCGGTCCTA 374095 29 75.9 0 C.TCG.......C............C.A. | T [374099] ========== ====== ====== ====== ============================= ========================================================================================================= ================== 16 29 96.6 37 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : AGAAGCCAGAGCACACAGCGTTATTTGTGAACTAGATGGCGAAGCAATCGGGTTTGCAGTGTATTTCTTTAATTATTCTACTTGGCTTGGCAAGCACGGTCTTTATCTTGAAGACTTATATGTATCACAAGATAAGCGCGGTGTTGGTGCAGGTAAAGGGATCATGAAATATCTCGCAAGACTTGCACTACAAAAGGATTGCGGTCGCTTTGAGTGGGTGGTACTTGACTGGAACAAACCATCAATCGACTTTTATGAAAGTATCGGTGCTAAAGCACAAAACGAGTGGATTATTTATCGCCTAACAGGACAGGAACTCATCGATTTTGCTGAGCAAGTATAGTGAAGTTTATTAGTCTGTTGGCTATACATTATTTCAAGAGAAACCCCCGATCTTTAACAATTGAGCCGAGTAAACATACGTAGAATTTGTACCCAATATTTTTGGTGAAAATTGCAATGGTGATTTTTGTTAATAGAAACAGTGATATATCTTTAGA # Right flank : GTAGAACATTTTAGTAGGAAAGAGGCGGTGGACAGCTTGGCTGGAAGTGGTGACAGGGTGAGACTCGAACTCACATCATATATAAACTGCATATAACCGTTACCCATTGGAAACACTGCCGCCATAGTTGATTATTAATCTACCATCAAAAAAATGCTAGCGTGATTTCACTGTCAGTTTGTCTCAGGTCAAAGACTTACTTTGTTTGTTCTGATACATTTATTTTACGAAAATTTTACCAGAGTGTTTTATGCAGGCTAAGGAAGAGCTGTATTTTAGATATATTGAAGCGGTATTGTTTTGGCAGGGAGAAATCCAGACCGGTACTTTCCAGAGCAAATTTAAGCTTTCAAGGCCCAGCGCACGGCGTTATGTCACCGACTTTATTGAGCGTTATCAGATTGCCGCAAGCTATAATGAGTCTGAAAAAGCTTATGTGCTGGCAAGCCCCTTTACACCTAATTATATCTCTCAGGATTTTACTGAGTATACTAGTCTCA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.40, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 384726-387380 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074588.1 Pseudoalteromonas piscicida strain 2515 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 384726 29 100.0 32 ............................. TTCGAACTTGCATATGGAAGCTACGTCCAGGC 384787 29 100.0 32 ............................. GTAATCAGGAAAAACTTTATGATGGCCAGCAA 384848 29 100.0 32 ............................. CAGGCTCATTAGCCGATTGTAACCCTTACAGC 384909 29 100.0 32 ............................. GCTGCAAACGCAGCCTTTCCATTATTTGACGA 384970 29 100.0 32 ............................. CACTCGATATTATCAAAATCGGCTGGTATGGC 385031 29 100.0 32 ............................. TGTCGTTCTTTCCACCGCGCGGCATTTTGGTC 385092 29 100.0 32 ............................. TTTAATGTTGATACTCCTGCATACAACAAGTA 385153 29 100.0 32 ............................. GCCGTGACGAACTGGCAATACAGCCAAATATG 385214 29 100.0 32 ............................. CACTAGCCGGTTAAATTCAAATTCCAACTTCT 385275 29 100.0 32 ............................. GTAACGTAGGCAATGTTACATTCAAATCCCCA 385336 29 100.0 32 ............................. CGTTTTTATCTTTAATTTCAGTGGGTAGCAGT 385397 29 100.0 32 ............................. ATAGATTCTTTTGATCGATATATATCTTCTGA 385458 29 100.0 32 ............................. TCTGGAATAACTTGAACATGGTCAAATCCCCA 385519 29 100.0 32 ............................. CTCCCTCCATTGTCTATTGGTACCAGTCATCA 385580 29 100.0 32 ............................. CTCCCTCCATTGTCTATTGGTACCAGTCATCA 385641 29 100.0 32 ............................. TGAATAAATTACTCGATGCAATGAGTGGGGAG 385702 29 96.6 32 ....................A........ CCGACAACCAACGTATGATCAACCATGCACTC 385763 29 100.0 32 ............................. GCCAAAATTGGGGTATTTGGTTTGCGTATTGT 385824 29 100.0 32 ............................. TGTCCGTGCCTGATTTGATTTTCTTAAAAACC 385885 29 100.0 32 ............................. AAAATAGAACGTTATCTATGGATGATGTGCAC 385946 29 100.0 32 ............................. TGTCCTCAACTTCTAGCACCAAAGACTCAATT 386007 29 100.0 32 ............................. GATGATGGCTCAGGAATTGCCACCGCTGCAAA 386068 29 100.0 32 ............................. CATGGTTAGGTGCAGACAAAGCCACGGGCGAA 386129 29 100.0 32 ............................. GGGTTGTTCATTTCTAGATTTGAGTATGGATC 386190 29 100.0 32 ............................. TGTGGGTTTACTTGTTTGAGTTTTTACTTATT 386251 29 100.0 32 ............................. GCCATTTTTTATCCTTATAGATTATTGAATGT 386312 29 100.0 32 ............................. TAAATGCTCAAAAGTACTTGAGTTGACTTTTA 386373 29 100.0 32 ............................. GCGGGAGCAATCCCGCCTTCCCTTCGGGGAAA 386434 29 100.0 32 ............................. AACCCTGCCCACGAACGTTCTATATCGTGCGA 386495 29 100.0 32 ............................. GGGGACTGATGACAGCACCTGCGAATAGCGGC 386556 29 100.0 32 ............................. ACGATTCAATCATCGGTGAGTTGGCAACGGGT 386617 29 100.0 32 ............................. CATAGCATAGATGCACAAGCCCTCACCGAAGC 386678 29 100.0 32 ............................. GGATTGTATTGGCATGAGAATATCACGGCGAG 386739 29 100.0 33 ............................. ATGTCGCAGATTTTTTAGGAATGTCGAGTAAAC 386801 29 100.0 32 ............................. ATATTGGCGATGCGCCAGCGTTATGTGATTTA 386862 29 100.0 32 ............................. CTAATATCTGTATTTAAATGGCTCCCATCTGG 386923 29 100.0 33 ............................. CCGTTGACGGCCTCGAAAATAGGTTCTTTTTTC 386985 29 100.0 33 ............................. TGATAGCGATTTATCTTGTAGTAAAAGAGTAAC 387047 29 100.0 32 ............................. ATATCAAAAACATTTATGTTCCCAATACTGAT 387108 29 100.0 32 ............................. GGATTGTTTCCAGTTGAGAAAACCGGTAACGA 387169 29 100.0 32 ............................. TGATGTGGTAATAAAATGGATAAAAATCAGTA 387230 29 100.0 32 ............................. TCACAGTTTACGTGTAAATATTAGGTATAAAC 387291 29 100.0 32 ............................. GGTTGCCACCATCGAGGATTTCTACCAATCCC 387352 29 93.1 0 ..........................T.T | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.8 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : ATAGGCGACGAGGGCCATCGCAGCGGAGGGTCACTATGAGTATGTGCATGGTTGTTACTGAGGCGGTGCCACCGAGGTTAAGAGGTCGTCTGGCGGTGTGGCTGCTGGAGATCCGCGCCGGTGTGTATGTAGGTGATGTGAGCAAGCGCATTCGTGAAATGATCTGGTTTCAGGTCAGTGAGCTGGCGGAAGAAGGCAATGCGGTTATGGCTTGGGCAACTAATACCGAGTCGGGTTTTGATTTTATCACTTACGGCGAAAACGCCAGAATGCCTGTCGATTTTCAGGGCCTGAGATTGGTGAAGTATACGCCCAGAGCAAATGATAATCCGGGAGCTGGTTAGCGAACTCCCCTCGTTTTTTTAATTCGATTTAATGCTCTTTAACAAGTTGGTGATTAAGATTTATACCTCATAGTGAGAGGTGCTTTTGTACCTAAAATTTTCGGTAACTTTTACTAGGTGATTTTTCTTTATTAAAAACAAGTATATAATTTTAGA # Right flank : TGAGCGACTCAGGTCTGGACCATGTGCTGGAATTCGTCCGTGAAGCAGCACCAGATGCTCACCTCATTGAGCGGTGAAACAGCGGCGATTCTAGGCCCGACTGTAATCCCGGGATTAAGTTATAGCCATCATTGTTAGCTAGTTATTTATCCACATGACCTAAATCACGCTCAGGATCTAACAAATCTCTCACCCTTCTTTTGAGCACTTTGGCTTCAGGAAAACCTTCATCCGCCTTTCGGCACCAAATTAGCGTATTGTTATAGTAAATTTTGAATACGCCTTTACTTGCTGGCACTAACGCGACTTGTTGTAAATCGTCAGAGAAAGTTGAAAGTAACTCTTGTGCAAGCCAAGTTGCTCGCAACATCCATTGGCAAAGTACGCAGTAATGGATAGTGATGGTCGGTTTTTGCATGAATTTACGTTTTTTTGAAGGCTGTGATGGGATTCTAGCACTGTGATTTATCATATGGCTAGCTTGAAAAAACGGGGGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 492637-493143 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074587.1 Pseudoalteromonas piscicida strain 2515 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================ ================== 492637 25 76.9 42 .AGC...-.AT............... GACTCAGACAAAAGCATTTAGAAGTAATGATCTAAATAGTGT A [492644] 492705 26 96.2 42 ..........T............... TTCTCAGACATATATAACAACGGCACATCTAATATCTTTTAG 492773 26 100.0 44 .......................... AACTCAGACATCTTAGAGCGTGGTGGCTGGACTATCAGTAAAGT 492843 26 96.2 42 ......................G... TACTCAGACTGAGAAAGTTAAATTTAGGAGATACATATGTCA 492911 26 96.2 44 ......................G... TACTCAGACAAGAAAGCGGTTTAAACTTTCTGGAACAAGAAGTT 492981 26 100.0 43 .......................... AACTCAGACCTAGCATGTTTTACAACGAGCAAAATATACACAT 493050 26 96.2 42 ..........T............... AACTCAGACGGAGACAGATATAGGATATCGCAAAGGCTTTGG 493118 26 92.3 0 ......................GA.. | ========== ====== ====== ====== ========================== ============================================ ================== 8 26 94.2 43 GTCTTAATCCCCTTCAAAGTCGAGGC # Left flank : TCAGCTTAAATTCAGCTAAAAACACCATTAAAGGTACAAAAGCGCAGCTTAAAGTCAATATTACGCTTGGGAAGTTATATGTTGGATAAGTAGCATGGAATGTCGATTTAAGTTGGTGAAGATCAGTAATAGTAAAAGCGGCTAGGCCAGCTGACTTGCCCTGCGCCATCGGCTTTTCTTGCGCCCATACACTTGCCACAAAACACAAAGAAATGTGCCTTGTCTGTACTATTAAGTAATTTTTTAAGTTGTTTTTGTAATCGAGTAACCGCTCTCCAGTTTTAGGCTGCACATTGATTCATCCATGAAGCGCTAACCGCTTCGGCCGTCCTATTCGTAGCAGCGACTTTATGTCGCGACTCTCTTAACTCGCTTGTCTCGAGATGTATTTCAATCTTCAAAGTCGGGGCGACGAAAGACCGAAACGCAGTTTCGCAGCTTGAGGAGGTGAAGGCATGGATGCCTGATGGAACCCAGCTACAAGGACGTATTACAGCTCA # Right flank : CTACTCAGACTATAGCCGATCGAGGCCGCGTCAGGCAAGGGCTAGAAGAGGTAAAAATGTCGGTCTTCTTCAACCTGTTCCCAAAAGCACTTACTTACTGACATTTTTGATGTCAAATTAATCAAAAATCATAATAAATTCATCACTCTGCGGTCTCAGCTACTGACACTTTAAAGTATTCAGCTAAAAACACCATTCAAGGTACAAAAATGCAGCTTAAAGCTAATATTATGCTTAGGGAGGTATATGCTGGATAAGTAGCGTGGAATGTCGAGTTAAGTTGGTGAAGATCAGTAATAGTAAAAGCGGCTAGGCCAGCTGACTTGCCCTGCGCCATCGGCTTTTCTTGCGCCCATACACTTGCCACAAAACACAAAGAAATGTGCCTTGTCTGTACTATTAAGTAATTTTTTAAGTTGTTTTTGTAATCGAGTAACCGCTTCAGCCGTCCAATTCGTAGCAGCGACTTTATGTCGCGATTCTCTTAAATCATTTGTCTC # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCCTTCAAAGTCGAGGC # Alternate repeat : GTCTTAATCCTCTTCAAAGTCGAGGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 2 494695-494111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074587.1 Pseudoalteromonas piscicida strain 2515 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 494694 35 100.0 35 ................................... TAGCCTTTACGGCACACGGTTTCTGCTTTCATAGT 494624 35 100.0 34 ................................... ATAAAAATTTGTTTTATGTTCATGTTTTGCTCCA 494555 35 100.0 33 ................................... GCAGTAGTAAGGTCTACGTGTTGATTTGTCGTT 494487 35 100.0 35 ................................... AGTCTTGAAAGACTGCATTTTCTTCGGTTTTCATT 494417 35 100.0 34 ................................... TTTACTTTTTTTCATCATATTTTCCTTATAATGA 494348 35 100.0 33 ................................... GATTAAAGTTTTTTGTTCATTAACCATAGTGCC 494280 35 100.0 33 ................................... AAAATTAGGTTTTTGTTTTTGAGACATAGTCCC 494212 35 94.3 33 ............T...........A.......... CATTTGATTTTGTCATATTAAAAGAACCTTTTA 494144 33 80.0 0 ........T...T...........AT..--..C.. | T [494120] ========== ====== ====== ====== =================================== =================================== ================== 9 35 97.1 34 GTCTGAGTAGCCCCGACTTTGAAGGGGATTAAGAC # Left flank : AAGAGGAGAAACTGCTGTATTTAACTGGTTTACTAATAACGACCATAACAAGCAGGAAAATAAACAAACGCTCAAATGTTTAGGAGCAGATGGCGCGGGCTTATTATTGGAAAATCAAAAACCTAAACCTAAACCTAAGCCTAAGCCTAAAAATAACCGTAACGCGAGGTAGCTTTAGGTTAAGGGAAAGCACGATAATTATTTGTTATTAAGAGCCCATTAACGGCAGCGTTAGTGGGCTTTTTTATTGCCAGTGAATGACGCTTTTAACCTCGCTTTGAGCCGCATTGCTACGTTCCCAACCGGGTGTTTTTAACTGAACTTGAGCTGAATATTTTAAAGTGTCAGTAGCGTAGACCGCAGGGTGGTGAATTTATTATGATTTTGGGTTAATTTGACATCAAAAATGTCAGTAAGTCAGTGGTTTTGGGAACAGGTTAAAGGAGACCGACATTTTTACCCCCTCTAGCCCTTGCATGACGCGGCCTCGATCGGCTATA # Right flank : GTCTCGAGACAAGCGAGTGCTCGCAGCTTGGCTAGTGTTGAAACTGAGATCTTGGACGGTCGAAGCTGTTAGCGCTTCATGGACGAATCAATGTGCACGTCCTAAAACTGGAGCAGTAACCCATGCCTCGACTTTGAAGGTTGAAACCCGTCTCGAGACAAGCGAGTGCTCGCGCTTGGCTAGGGTTGAAACTGAGGCCTTGGATGGCCGAAGCGGTTAGCGCTTCATGGACGAATCAATGTGCACGGCCTAAAATTTGAAAGCGGATATGTATGCCTCGACTTTGAAGGGGATTAAGACTCTTTATGTTGCTGCCAAGATTTCATTTGATACCGTCTGAGTTGCCTAGACTTTGAAGCATATTAATCCTGAGCTGTAATACGTCCCTGTAGCCTGGTTCCATCAGGCATCCATGCCTTCACCTCCTCAAGCTTCGAAACTACGTTTCGGTCTTTTGTCGTCCATTTCGAGACAAATGATTTAAGAGAATCGCGACATAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAGTAGCCCCGACTTTGAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 506645-507027 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074587.1 Pseudoalteromonas piscicida strain 2515 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 506645 37 100.0 31 ..................................... TATTTTTTTTTAAAACTTTGTTTAATTTTCA 506713 37 100.0 32 ..................................... AGAGTCGTTAGGTGTTTCTCCTACGACTAGGT 506782 37 100.0 37 ..................................... AAGATGTATTTGAGTTTGAGTTTAAGTTTACGTTGTT 506856 37 97.3 30 C.................................... CAAGGTTTTGAATTTCATTTGAATTTTCCA 506923 37 100.0 31 ..................................... TTTAGTGAAACTTGCATTGTTCATGATTTAT 506991 36 83.8 0 CC.........................T.-....TC. | C [507015] ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 96.9 32 TAGTCTGAGTTGCCTCGACTTTGAAGAGGATTAAGAC # Left flank : TTATAGCCAAAACACACTGTACGTTATAGTTTAAATTACCGCCTCTGATGACAGTCTCGGATTATTCCCTCCGCGTATTACGTACATTTCGCAAACTTTTTAGAGGAATATTAGCTGAATGCTCTACAATATCAGCAGCCGAGAGTACAAAGCTTTGAATCTACTAGCCTTTTTATATTTTTATATCGTAAAACATCAACACTCGGTAATTTTGGAGCAAACTGCAAAAATCGACACTCCATGCTATTTATCCTGCATATCCCCTTTAGCACATACTTATCTTAAGCTGCGTATCTGTACCTTTAATCGTATTTTTAACTGAATTTAAGCTGAATATTTTAAAGTGTCAGCAGCTGAGACCGCAGGGTGATGAATTAATTATGATTTTGAATGAATTTGACATTAAAAATGTCAGTAAGTCAGTGGTTTTGGGAACAGGTTAAAGGAGACCGACATTTTTACCCCCTTTAGCCCTTGCGTGACGCGGCCTCGATCGGCTA # Right flank : CTGAGCTGTAATACATCCCTATAGCTGGGTTCTATCAGGCATCAATGCCTTCCCCACCTCAAGCTGCGAAACTGCGTTTCGGTCTTTCGTCGTCCATCTCGAGACAAGCGATTTAAGAGAGTCGCGACATAAAGTCATAACTACGCCAGCCCCGTAGCAGCGGGTTTATCCCGCGATAGGAGCATCATCAGCAACATTGTGGCATAAAATTATAAAATAAATCGCGACGTAAAGTCGCTGCTACGAGCTATGTGCCCATATCACCAACTGCTCCCCTGCGTACACAGACTTAAACTCATAATATTAAACCAAACCAATATCTTAGGTTTGTTGAGCCACTTTTGAGCATAAACCTTGCTGAAGTTGTTATACATATTTCAGAAGGATTTGCTAAATGAAAGTTCAACACCAAGCAATGCTATATAATCAGGCTCAGGTGCGACGCGCGCAATCAATCGAAAATGAAGCGAAGGGAAGCGTTTTGCCAGCGTCAGAGGCAA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGTCTGAGTTGCCTCGACTTTGAAGAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //