Array 1 422605-421424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422604 29 100.0 32 ............................. ATTGACAGGAATGTCTTTTGTTAGCATCTCTA 422543 29 96.6 32 ............................T CTTTTATGATAGGTGCAATTCTGGCACTGTGC 422482 29 100.0 32 ............................. GTGGGATCAGCCACCGCCGCAGGCAGCGGGAC 422421 28 96.6 32 .................-........... ACCTAGGTGGAATGCATTACACGCCACCGATC 422361 28 93.1 33 .................-..........A TCGGAGCGCGTGCGCGGAGATGAATATTCGGTA 422300 28 93.1 32 .................-..........T GGCTCAAATCGAACAAGTCGGTGACGACATTA 422240 29 100.0 32 ............................. GAACCCGGCTACCTCCCGGAGGCTCCCACCGT 422179 29 100.0 32 ............................. CGGGAGGGTTCGCCTATGCCTGACAATCTCAA 422118 28 96.6 32 .....-....................... ACGGGGTGGACCCGCTGGGGGTGGACCCGGCG 422058 29 96.6 32 ............................G ACGTGTTCCTCGGCCCGGTGTACGTGCCGGAC 421997 29 100.0 32 ............................. CACACACCAGCATCGAGCATCCACAGCAGCCA 421936 29 96.6 32 ............................T GTTGGGTCGGCCCCGCCGACATCGCGATCCCA 421875 29 96.6 32 ............................G GAACGTGTCATGAGCCGCCATTGCGCTCGGAG 421814 29 100.0 32 ............................. CCATTCGGACTCGTTCACCCAGGTGATGCCGT 421753 28 93.1 32 .................-..........G ATGCTTGATGAGGATGGTAAGGCCCGGTCCAT 421693 27 89.7 32 .....-...........-..........G TAGGTAAGGGCATATCAGTCCAAGATTTTTTA 421634 27 89.7 32 .....-...........-..........A AGTTGAACCCTTGCGCGTCGTTGCGCTCGTTC 421575 29 96.6 33 ............................G TACGACCTGGACACCTCCACGATGTTCGTGGAC 421513 29 96.6 32 ............................A TCACGGCTGGTCGACATCATCGAAGCCACCTG 421452 29 79.3 0 .....................T.TCAG.T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 95.5 32 GTGCTCCCCGCAGGCGCGGGGATGATCCC # Left flank : CGAGAAAGACATTACCGACGTAGCAGCTACCACCGGCGCCAAGCCTCAGCGGAATGCGTGAAATCCTTGCAGCTCACCAGGCTGCCTTGCTTACAGTTGCCCCTGAGGTGATGCTTCTGTGATGCCTAATGTCAGGTGGCAACTCATCCTTACTGTCTAGTACTCCACACCGATGCTTGTCACTAGTAATGGCTGGTCGCAGGCGTAAACTCTGCCTCGCAGATGGTGTCGTACAGCACCCTTTTCCATAGACCAGCGGGTCGGAGCACAAGCGCAACTCCACAGGGACTGTCCTGACGCTAAGCTTGACCAACGAACCACTGACTACTTTCGGCCGGAATGTGGTTGTCCTCCGGTTCCGTGGAGGATGTAAGTGGTGTTAAGGAGCGGGTGGTTGTCGGTTGTGTGGTGTGGCGTGGAGGTAGTTTTGGTTGGTGGTTGTTTGACACAAACTGAAGCTATTTTGCTGTGTCGGGCTGTATAGTGCCTGGTCATCAAGT # Right flank : ACAGCACGATGGACAGTCATCCTCAGGGAGGAGAAGTGAAAACCACCCGTCTACGCCGCCATCTTGACGAAGGTGGTCATGAGCTCACCATCAGAATCGCGAACGTCGAGCTCGTAGTCGAGGATCTCGGCGTCACTGCGGCCGTCGCGGCGGACGGCGGCGGTGAGCAGACGCTTGAGGTGATCGGCACTGCCGGGGTCGGCTTCGGCGGTGAAGGTGCGGACGAGTTCACCGAGATAGCGGAGCTCGAAGCTCAACATCCTCGGACCTTCCTCGACTGAGGTGGTCATGGAATCGCTCGTTGGTTCCCAGTTGCGAGGCGGTTCTTCAGGTGACCGGAGGGCTATCTCGTTCGAGTGCTCAGCCTCCGTTGCCAAGGCTTCACATGCCCCGACGGAGACCGTGTTCGGCTGGCCGGCTCCGGTGGTTTCGACGAGCCCCCACGTCTTGAGCAGTGACACGGCGCGGCTGGCGGTGGCCGAGGCGACGTCGTATTCGGC # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 686710-686558 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 686709 30 100.0 31 .............................. GCTCCCGGATTCCCTCCGACCATCAACGGCG 686648 30 96.7 31 ...........................T.. CCCGGCGAGATACACGAGCGGAAGCGTTTCG 686587 30 96.7 0 ..............C............... | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 GTCCACCTCCACACGCGTGGAGAGCACCCC # Left flank : AACCACCCCAAGCCGGTGCCGCGCCGGAAATCCTCCCCTCCCCACCCCGGCGCGACACCCCACCCCGGCCGGGGCGGTACCGGTTCTCCACCGCCCCGGCCGGGGGCAAACACCGCACCATCGAACCGAGCAGGACGCATCGTCATGTCCAGAATCTCCCCGGTCACCACGATCCTGCTGCGCGAATGCGCCGGAACCGCCCTCGCCGTAGCCGCCTTCGCCTACAGCGGATGGATCACCACGATCTTGAGCCTGTCATTCCTCACGAAGCTCTTTCACCACAGTGGCTCAGACATCGAACTCCACGCGTTCTTCGGCGCGCTGTCCTGCCTGCTGTGGTGGACGGGAGTCGCCGGAGTGCGCCTCGCCGGATGGCGGCCGAACTGGCCGATTCTCGTCGGCCTGCTCCTCATCGGCGTTCACACGATCGAACTCGCCGTCATGACGGTGATAGTTCACCACCCCGCATGAGACGAAAAAGCTTCCCGAACCGGTTCACA # Right flank : TCTGCGACCTGCGACGTCACAACCGCCGCCGCACGTTCTCACACCGCCGACACAACGGAAACCCCCACGCACGATTCACGGCTCAACGAGCGGACTACACCAGTACCCACGAACCTGCCACACACCGAGTCACCCCAGCTATCGACCAGACCAGCCTCCATCACAAGCTCACCGGAAACGAGCGGACCGGAGCTTCGGGAAGCACCTCGACCTTCCCGGATGCCGCATTCCCGATTCCCGCGATCACCGTGCTGGAGTTTTCGAACAGCGGCAGAAGATCAGAGAGCGGTGATGCGCAGCACGTCGATCAACAACATCCGCTCCCCCACTGTGTACATGACGATACCGCCGTCGAACGCGGCCTTCCACTGATCACGACCTTTGTCGTAGGTACCGGTGTGTGGCTCGACGCGCAGTTCGTCCAGTCGTTTATCCACCGCCTTCTGAAGCCGTGGCGGGAGATCATTGTAAGTCCGGTCGGCTTGTTCGCCCCAGCGAAT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACCTCCACACGCGTGGAGAGCACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.70,-9.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 870769-870978 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 870769 27 100.0 34 ........................... TAGAATTGCGTGAAGACGCTCTCCGTCACTGTCA 870830 27 100.0 34 ........................... GCGTTCGGCCTTGCTGTAGACGATGTTGATTTCG 870891 27 96.3 34 ......T.................... GGCGGGAAAACGCCTCAGCGGGGAACACCGGCAG 870952 27 85.2 0 ......G...G.A.........A.... | ========== ====== ====== ====== =========================== ================================== ================== 4 27 95.4 34 TAGGCCCCGCACGCGCGGGGATGGACC # Left flank : ATCGCCGCGCAGCTGGTGCGTATCAAGCACGAAGCAGGGGAGCGGGAACTCGTCCTGGTAGCTATGGCCCCGAAGGCGGTGATGCTCGCCGTCGGGTGGCACCTCTCGCAGCACGAGTGCCGGTTCTTCCACGGCACGCACTTGATGTACTACGACCGCGACGACGACAGTTTCATCCCCGTACGAGTGCGGGAATCGCAGCCCACGACGCCGCCGTTTCCTTCCGAAGTGGAGGATCCCCTCAGGAGCGAGGAATCCGACCGGAAGCCCGAGCGGCCGAGCGAGGAGCTTGAAGCGCTCCCCGCCGAGCCGGAGGCCGAAACGGTTCGCGACGGTTGACCGAGGCCGCTTTCCCGTTGGTCCGAGCCGTCCGGCGCGGCGATTTCGTGGGAAATCTACGCCTCGCCGAAGGGAGTAAGGAGTGCCGAATCAGCCGATACCGCCGCACCGAGTGGTTCTCAACGGGCACTCGCACTGCTAACATCCCAGCGCAGTGAGTA # Right flank : CGTCTGGCCACTGTGGTGGTTGGTGCCGGCTGCCGCAGGCCCCGCGCGCGGGGCGAACCAGCGCTGCGTCGCCACCACGTTGGCGGCGGCGTTTTCTCGGCGAAATCCAGAGCCGTGAGCTGGCGTCTTAAGCAGTGTTCGGTCGCGGTTGCCGAACTCGTGGCCCGAACACCATGAGCTCCCAGGCGACTGTGTTCCTCAGTCACCTGGCCTTGCTACGCTTCCCCGATCCTGTGCTGCCTGAGTGCCGACCACCCTCGATCAACCGGGCAACAGGCGCCTTACGCTGCGAACCGCGTAGTCACTCCGTGGGGAGGCATTCGAGTGCGTCGCGTGGCCTAGCGTGATGCGGCTAAACCACGGGATACGGCCAAGGTTTGGAAAGAACCGGGAGAAGTGGAACGCGAGCGTGTACAGCTGCTGGTCACAGCATCGGGGACGAGTATGTACTCGGTACCTGGAGCTGGCTGAGCAGCAATCTGATCAGCTGTGACGTTCGA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGGCCCCGCACGCGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 4 4014090-4013939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4014089 29 100.0 32 ............................. GCACCACCAACCGGACGGCAGCCCCAGCCTAC 4014028 29 100.0 32 ............................. GAGACCGCGTGAGCACGTGTGCGCGCGAGCCC 4013967 29 89.7 0 .........................C.GT | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTGCTCTCCACGTGCGTGGAGGTGGACCG # Left flank : AACCTGACGATGTGCGACCCTACGAACGCATGCTTACCAGGCTTGAAGAGTCAGCACTGTCTGCTGCTGACTCCATGAGGCTACTAAGCGAATACGTTCAATATCACGAGGATCCAGCATGATCGAGTTCATCACATGGCGGAAGAGCAGTCGCAGCAGTGCCTCTGGCAACTGCGTCGAGGTCGCCCAGAATCTGCCGGGGACCGCTCTCCTCCGAGACAGCAAGCTCGGTACCGACAGCCCCGTCCTCGCGGTCTCCCCAGGTCACTTCGCCGCTTTTCTCGACGCGCTCAAGAACGACCGTCTCGACGGCTGACCCCGCCTCGTGGAGTCCCGCTCGGCATGGCGTCGGGCGGGACTTTTCGTATCTCTGGCTACGATGGCCCCTGACCGGAACCGGTCGAGAAAGGCTGATTCCACAGTCGAGGTGTGGTGTTCCGATGTCGCGGCGGTGGTGTGAAAACGTGCAGCGGCGGTTGTAACGTCGCAGGTCGCAGAGG # Right flank : CACCGGTCTCGACCTCGGCGCCTTCCGCCGCTGGAGTCCGCGACACGAAGCTGGGTGAGGACAGCTCTACCTTCGTACTTCGTGCGTTCGCTATGGGGTTCTTTTCCTGACGCGCTCAAAAGTGACCGCTTCGGTGGCTGACTCCTTCATTTTGATCAGGTTTCCGGACGAGGACACGCTCGCCTTCGTCTGCTTGGAAAGCGACCGTGGCGGGGTTTACCAGGAGAGCCCGGGGATATCGAGCGCTATACCCCCGGTGAGGGAACAGCTCGCGACGTTGGCTCACAGCGAAGATGACGCCCGCGTGCCGCTCGAACAGTTAGTCTCGTCCTGACGGACCACCTCGGGAAGGAGCCAGGGATGACTCCGGACAGTCTTGCGGATGCCGTGTGGCGCAAGTCCACCCGCAGCAACGGCACCGGTGCGTGCGTTGACGTGGGGATCGCGCCTTCCGCCGCTGGAGTTCGCGACACGAAGCTGGGCAATGAAAGCCCCACTCT # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGTGCGTGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.20,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4100709-4102668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4100709 29 82.8 32 TGTC.T....................... GCGGCGCTGCGGGAGGTGGAGCGGTGAACCCG 4100769 29 96.6 32 ............................T GACACTGGGGTCGCGAAATCGGCTGTCCACAG 4100829 29 96.6 32 ............................A CGAGGCACACCATGTCTATCACGAAGACCGCT 4100889 29 100.0 32 ............................. GACACAGGAGAGGGCAGAGCCTTAGACGCCCT 4100950 28 96.6 32 .................-........... GTCGGGCCGTGGCCTCACCCGGTCGCGGCCAG 4101010 29 96.6 32 ............................G AGTTCGTTGAGGCACCGGCGGATCCGCGGTGG 4101070 29 96.6 32 ............................T TCCGACATGGTCGGATCAGGTCGCACACGGAT 4101131 29 100.0 32 ............................. TTCTCATCGTTCGGATCGCCACCGTGCAACTT 4101191 29 96.6 32 ............................T ACGCCGTTGAGGTAGGCCCATGCCGCGACGTA 4101251 29 100.0 32 ............................. TCGTCGAGACCACCTACGCGACTCGGTTCCAG 4101311 29 100.0 32 ............................. AAGTCCTGGCCCCACGTGGACACGATCGCGCT 4101371 28 96.6 32 .................-........... AGGCAAAAACACCCCACGAAACGACACGGCAC 4101430 29 96.6 32 ............................G CCAGATCGATCACCGTCGCTTGATCTTCACCA 4101490 29 96.6 32 ............................G AGCATCGTGTTCGGCGACATCGCTGCTGGATA 4101550 28 96.6 32 .................-........... GCCGCCAGCGCCGCCGTAGCCCCGGCGATCGC 4101609 29 96.6 32 ............................T AGTGTTGTCCGGTGTTGTCTGTGATTCCCTCA 4101670 29 96.6 32 ............................G GGATGCGCGTGGTGGTGCAGGGACGGTTGCGC 4101731 29 96.6 32 ............................T CCGAAACCGGACGGGGCCGTGTCTGCGGCGGT 4101792 29 96.6 32 ............................G ATTCGATTGAGCTTGCGGTTGATTCGTTGGCT 4101853 29 93.1 32 ...........A................G AGGTGTGTGGATTGTGTGGCTGAGGGAGTAAC 4101914 29 100.0 32 ............................. CCACACCCCGCAACCACGAAGGAGAACGTCAT 4101975 29 100.0 32 ............................. GCCACAGACGGCCTCGCGCCCTCGCCTTGGTG 4102036 29 100.0 32 ............................. CCAGCACCGACTCGCTGCCCCGGCAGATGATG 4102097 29 100.0 32 ............................. ACGGCGTGGTCGACGACCTGGCGGGCGTAGAG 4102158 28 96.6 32 .....................-....... TGCGGCGGTACTCCGCGAGCGTGCCGCGACGG 4102217 28 96.6 32 .................-........... GGCGCGGCCATCAACTACGGCAACATCCGGCA 4102276 28 93.1 32 .................-..........G AACCGCTGATCGGGGCGGACAAGCGGGACGCC 4102336 29 96.6 32 ............................G GAGCATCCCGACGTTGAGGATCGCTTGACGGT 4102397 29 100.0 32 ............................. TGCACCGCGACGACGAGGGCGGGCAGTCCGAG 4102458 29 96.6 32 ............................T CATGACTGTGGCCACGGCGAAAACTGCTGGTT 4102519 29 93.1 32 .........A..................T CGGGCTCTCTGGCCGCGCTGGCCGCGTACGGA 4102580 29 93.1 32 ........................G...G CACCGCGTCGATCTCACCCGTGGCATCGTCGA 4102641 28 89.7 0 ........................-..TA | ========== ====== ====== ====== ============================= ================================ ================== 33 29 96.5 32 GTCTTCCCCGCGCGAGCGGGGGTGAGTCC # Left flank : CGAAGCACCACCTGATCCGCGAGGGCGGCGGCATACCGCTGGCCGTCACGCTCACCGGCGGCAACCGGCACGACATCACCCAACTGCCGCCGCTGGTCAAGACGATCCCGCCGGCGCGAGGACGACGCGGGCGACCACGCCGCAAACCCGACGTGCTCGTAGCCGACTACGGCTACGACGACGAGCCCTACCGCGACCAGCTCCGGCAACGCGGGATCACGCCCTTGAGCAGCCGAAAACGCACCCGCGACACCAGCCAACCCGTGCGCTGGGTCGTCGAACAAACCCTCGCGCTGCTACATCAGTTCCGACGACCGGCCACCCGCTGGGAACGCCGCACCGATCTCCACCACGACTTCCTGAACCTGGCCACCAGCCTCATCTGCTGGCGCCGGCTCCCCGAGCAAATACGTTAGGGGGTCTTAGTAGCGTGGGTTCCAATGAGAACCTCCTGAGTCACGAAATGATAACGGAACAGTAGAATCCCAGCACAATACGTG # Right flank : ACAGAAGCGAGTATGCCCTGGCAGGCTCCAGAACTGCAGCAAAGCGCTTCACTAGAACCGCTCCGCGCCGGCCGAGGTTCGAGCCAGTTTGACTCAGCCAGTTTTCACTCATACCAAAATAGGACATGCTGTAACCAATTTAGCACGCAGTGGGTTCGTTCACCCAGAGTGTTCACTTGAATCCAAAAATGCTTCACTTTGCTGGCTCACGAAGTGAAGCACACCAGATCAAGCCAGTGCACACTTTAAACGGCCCCCTCCCCACCACCTGGATAACGCCCTGACCGATCGATGCTATGGTTCCTATGCTGGAGCAACGGGATTTCCCCACGAAAGCGGGGGTGTGTCGGTTCCTTGTTCGACACTTCAAACAGTTGATCCGGTTTCCCCACGTTTTTCAGCGACTCGGCCACGGTAGCGATAACCTGACCGAGAAGTTGGAAGCCAGTGGGGGTTGAAGGCGATGATCGAACTCTGGGGGCATCGCCGCCTGTCCAGCG # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4104376-4103437 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 4104375 27 100.0 33 ........................... CGAGGGCGCTCTCTACCGGTGGGACGGCAGCAA 4104315 27 100.0 33 ........................... GATTCAGGCCGACAGGTTACACAGGGCCAGTAC 4104255 27 100.0 34 ........................... CGCGTTCCGCTCGGTCGGGTTCGTGATCCATGCG 4104194 27 100.0 33 ........................... CGGGTTGCCTTTCCGGATGACGCAGAGCCCGCG 4104134 27 100.0 33 ........................... CGTTCCGGCGAGCTCGGCAAGGCCGGAGGTGGC 4104074 27 100.0 33 ........................... AGGGTGAGCCCGCCGGAATTGATCGTCGCCGAA 4104014 27 100.0 33 ........................... AGCACCGCCCATCGTGCACTTCGAGCACCTGTG 4103954 27 100.0 34 ........................... CATGCGGGCGTAGGCCAGGGCGGCGTACCAGTCG 4103893 27 100.0 33 ........................... CGCATCGAGCTGGTACTTCGGGAAGGTCATTGT G [4103872] 4103832 27 100.0 33 ........................... TGACCATCATCGGCAATCTGACCGGTGATCCCG G [4103811] 4103771 27 100.0 34 ........................... CAGGGTCACGGTCCCGTCTGCGGCCACCTGCCCG G [4103750] 4103709 27 100.0 33 ........................... CCGGGAGGAGTTCTTCTGCCCACCGACCGGGCG G [4103688] 4103648 27 100.0 33 ........................... CTGGCAATTCCCGAGCGGCGGGGGGTTTCGTGT G [4103627] 4103587 27 100.0 33 ........................... CAGGAGGCGATGATGGCCACCTACCTCGGCCCG G [4103566] 4103526 27 100.0 34 ........................... CCCGGGCCGGTCAGCATGTCCCCTGCACGCCACC G [4103505] 4103464 27 96.3 0 .........................G. | G [4103443] ========== ====== ====== ====== =========================== ================================== ================== 16 27 99.8 33 GTTTTCCCCGCGCGAGCGGGGTGGGTC # Left flank : TCGTCAAGAGAGCCCTGATCGCCGCTGAGCAGTGTAGGAAGCGTCAGGTGTGCGGCCTCTTCGTGTGATATCCAGCCGATCGTTCCCGGTTTGGGGCTCTGGTTCTGGAAACACGGGATGGCTTTGCCGGTGTCGTGCAACCCGGCCAGCAACGCCGCGAAATCACGAGCCTCGCTCTCGGTGCTCCCCAGTTCGTTGGCGATCCACTGTCGTAGCCCGGCGGTAACGTGTCGCTCCCACAGCACGGTGGCGGCGGCAGCGGCATCCGCGAGATGTAGCCGGAGCGGGTAGGGCTTCGGCAGTCCCTCCCACTTCCCCCAAGGTGTTTCGCTCAAAGCTTGCTTTTTCCTTAGAACATGGAACCTTGTTAAGAAACAAGGTACGCCGTCGCTTCCGCAAGCGATCAGCGGGGGGTGGTGTTAGCGTGACTCGTAAGAGGGTGGGGTGCCGCGTTCTGTAACAAATCGATATATGATGCGGAAAGTCCCAGTACAACAAGT # Right flank : AGCACAGCTACGCCGAGCATCTGCCTACCGGGATGGTTTCCCTACGCGAGCGGGGGCTCTGCAACCGTGCGGTATCCGGACATACCGTACTTTTTCCCTGCCAGGATGAGGGGCGTGGTGAGGTAACACGCGTTTCGCGTTGGCATGGCTATCTGTTGGTCAGTCCGATCCGTTCTTGACGGTCGTCGTACGAGCTGGAGTCCGTGACAGATCTATTGAGCATAGCTGTGTCCACGCTTGAGTGACTGAGTATTACGATTCTGCGCCCTCGCTGGACAGGCGGCGATGCCCCCAGAGTTCGATCATCGCCTTCAACCCCCACTGGCTTCCAACTTCTCGGTCAGGTTATCGCTACCGTGGCCGAGTCGCTGAAAAACGTGGGGAAACCGGATCAACTGTTTGAAGTGTCGAACAAGGAACCGACACACCCCCGCTTTCGTGGGGAAATCCCGTTGCTCCAGCATAGGAACCATAGCATCGATCGGTCAGGGCGTTATCCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCGAGCGGGGTGGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 7 4113210-4115478 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4113210 29 100.0 32 ............................. TCGGAGGGTCCGGTGTCCGGCGCGATCGACGC 4113271 29 96.6 32 ............................T CCGATCCGCGGTCGCGGAGAAACTCGTCATCA 4113332 29 96.6 32 ............................T ACGCCGACTCCCGCAGCGCCGTCGCGAACCGG 4113393 29 96.6 32 ............................T GCTCATTCCCTTTCCCTTCAGATCTTGGTCGG 4113454 29 96.6 32 ............................T GTGGTTTCGCTGGTGACCTCGCGCCCCTCGGC 4113515 29 96.6 32 ............................A ACGCCGACTACCTGCTCAAACACGCCTCGAAG 4113576 29 96.6 32 ............................A CAGAGTACAAAGACATCATCGGCACCGGATCG 4113637 29 100.0 32 ............................. TTGCGGTTCGGCACGTAGAGCTTCTCGTGGAC 4113698 29 100.0 32 ............................. CCACACCGGTAGAGCTCTCCGAGGACGACAAG 4113759 29 96.6 32 ............................G TCACCACCAGCCGGGAGCGGGACGCTCGCCGT 4113820 29 100.0 32 ............................. TCTGAGGCCCGGCGGTGCGCCACGGTGCGCGC 4113881 29 100.0 32 ............................. TCGGTGCTCGATCCGGTCAGTGCCTTGTCGAG 4113942 28 96.6 33 .....................-....... TCAGCGGTACGCCCACTTGGCCGATGCTCAGTG 4114003 28 96.6 31 .....................-....... TACGTGATCGGCATCGACGTGGACAACTATG 4114062 29 89.7 33 .G...T......................A GATCTCCCGGTATGTAGACGAGCTGGTGTCGAT 4114124 29 89.7 30 CG...T....................... AAGCCGCACTGGTCAGAGAGAACCGTCCGG 4114183 29 93.1 32 .G...T....................... TGAGCCAGCATCGTGGCCGCGGACTGGGTGGC 4114244 29 100.0 32 ............................. ACTTCGAGTTCCACGACGTTTCGGGCGTAGAG 4114305 28 82.8 31 CG...T...............-......T CGCCGGTGACGTCCACCGACTCCGTCGTTGG 4114364 29 93.1 29 .G...T....................... TGAAAAGACCCCGTGCTAGCTCCACGGGG 4114422 28 93.1 31 .....T...............-....... CACACGCGACGGTGACCACGGCCACCGAGGC G [4114424] 4114482 28 82.8 33 AG...T...............-......A CCATTGCTCGGGCAACTCTTGCAGCGCGCTTTT 4114543 29 100.0 31 ............................. GGCGAAGTGTCCAAGGACGACGAGTTCCCCC 4114603 29 96.6 34 ............................A TGGCGACACGACGCCCGCGCCGCCCTCGGTGAAC 4114666 28 96.6 32 .....................-....... AACGGACTACCGGACATTTTCAAGAACGTAGC 4114726 28 96.6 32 .....................-....... GCTATGCGTGATCGAGAGCGACAAGGCGCCGC 4114786 29 100.0 32 ............................. GTCGGCCCGAGCCTCGGATCGCTCGCGGTCGC 4114847 29 96.6 32 ............................A CGTTCGGGTGCGGCTCCCACACGTCAGGGCGG 4114908 29 100.0 32 ............................. CTGGGCGGGCTGTCCATGAGCGACGAGAGCAC 4114969 29 100.0 32 ............................. TCAGCGTGCTCCTGGCGATGCGCTGCTTGGCT 4115030 28 93.1 32 .....................-...A... CGCCACGGCATCCCCAACAAGTTCGGTCGCGA 4115090 28 96.6 32 .....................-....... GCGATCGTGGCCGACATCAACGTCGTGATCTC 4115150 28 96.6 30 .....................-....... AGCGATCCGATCCGCATCACTGCCCCTGGC 4115208 29 82.8 32 CG...T....................A.G CTAGAGATCCATTGTGTCTACGTCAAGTCATA 4115269 28 93.1 31 .....................-......G TTCTTCGGGATCCCGAGCGAAGTGCTGACCG 4115328 29 89.7 32 .G...T..................A.... TCGAGGTGCACTGCTCTCCGTCCGCTGTGCAC 4115389 29 96.6 32 ............................T AGAGTGCGCTGGCTGGGCAGCGGCCTGTACGT 4115450 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 38 29 95.5 32 GTTTTCCCCGCGCGAGCGGGGGTGGGTCC # Left flank : ATCCGTTATGTGCTGACCGGTGAGGGCACCGCTGACGAAGAGATCAGAACCGGCGTGGTGGACCTGTGGGATCCGGAGGGCAACGTGGCAGCCGGCACCAACTACGCCGACGATGGGAGAGGTGAGTCCTGGTGAGCACATTCGCTGTCATCACCACCAGTGCCATCCCGGACGGAACGCGGGGCGCACTCACGAGATGGATGATCGAGCCGGCTCCGGGTGTCTACGTCGGCACGCTCACCGCCCGAGTACGCGAATATCTCTGGGACGCGGTACGGGAGAGCATCGACGAGCAGTACGGCTGGGTCGCGCTGATTCACGACTCCGACACCGAGCAGGGCTATGCCGTCCGCACCCACGGCACCGGCAACGGTGAGCGTTCCATCGTCGATCTCGACGGGGTCTCACTCGTCTCTTGGCCTGTACTCGAAGGGCAGGGGGAAGAGAGAACCCTGGATCACAAATCAATAACGCATTGGTAGATTACCAGGTCATCACGT # Right flank : CCCGACGTGTCCTACGACGACGCCGCCCGCGCTGTGCGGGACGTACTCACCGAAAAGGTGCACCAGTCCAAGGTGCCCAACTCCGATGTGGTGTTCAGCATCAAGGACGCGATCCTGGACACCAACCGATTCGCCTACGAGATGTTCTCCGCCGGTTCCGAAGGCGTCGGGATGAGCACGGAGCAGCTGTGCCAGGTGGTGTACGACGAGGTCGCCAACGGGCTCTGCTCGGGCTACGAGCAGGCCGCCGACGCCATCGCCCTGCGCGTCGGACAGCGCATCATCGAAGGTGGTGGTGCGAATGAGTCGTGACTTCCTGCGCAGCGTGGCGCGCACCTGGATGCCGATGGTGTGGGGAGCGGTGATGAGCTGGCTGGTCACAGTCGAGATCGTGCCCGCCGGCGCCGCCCCGAAAATCCAGGCCGCCCTGGTGGCGGGCTCGGTGCCAGTCGTAGGGGACTGCTCTACGCCGCGGCGCGATGGTTCGAACTCCGGATGCC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCGAGCGGGGGTGGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 4281187-4281458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4281187 28 100.0 33 ............................ ATCACTGGACCAGGACATACTCGTCATTCCTCC 4281248 28 100.0 33 ............................ GTCAGGGTCGCTCGGATCGAGGTGGTGTCGGCC 4281309 28 96.4 33 ..............C............. TCCCCATGCTGGTGTGGTGGGAAGATCGAAGGG 4281370 28 92.9 33 .............G.........A.... TTTCGGGGTGCACCGCTCCACGCTCTACCGCGT 4281431 28 85.7 0 ..............G.......G.C..A | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.0 33 GTAGGCCCCGCGCATGCGGGGATGGACC # Left flank : TGCGTTGGCCCTGTAGAGAATGTTCTGGCGACCCACCCGCATGGTCACGCGCGCGTTGGTGTCGGCGTCCGACTGGTTCCCCATGACAGCGGCTGCGTAGTCGGCGGTTTGCAGGAGTCCGGGCATCACGTCGGTACATACGTCCGTGATGTGTCGCGCGCTGGTCTCGAATTCGATCAGCGTGGTCAGTTCACGGCGTGCTCCGGTGGGGCCGGATACCCAGTTGGGCTGGTCCGCGTCTCGCGCCATCTCGACCAGTTCGTGGTATCTGGCTCCGCGTACACCGAGCGTTGTGAGGATCTGGGCGACGTCTTCCGGCTTCGGCGTTCTGGCACCACTCTCGTACCGAGACAGCGTCACATAGCTGACGTCGAGATGCTGCCCCAAGGGGCCACGCTGGTGGTGTGGCAGCCCGGCCGGTGGTACTGACCACCCTCCTGCCCGGAACGAAAGTGATTCCCACAGCGGGAAAGCGCTGTTAAGATCGCAGGTCAACAAGT # Right flank : AGATAAAGCGTCCCCGGATCGCTCCGGGGACGCTTTATCTGTTCGCTGGAGTTCAGTCGAACCGGTTGCTCTTCACCGCGTCGATGAACGCGGCCCACTGCTGACCGGTGGCGGTGAAGTATCCGGCCGAGCGGTCCTTGGTGTCGCGGACGGCGGCGCCGTTCGAGGTGCGGCCGACCTCGACGCAACTAGTTTTCGAGGAGCGGCTCGACTTGCGCCAGCCCTCGGGGTGTACTGTCATCCGTGGTTGTCCTCCATTTCAGCCGCGCACTGAGCGATGAACTCGATGGACTCGGTCGGGTTCATCGCTGCCTCACGGAGGTTAACCGCCGCTTCCCGGTGAACTTTTATGTCCCCGGTGTTGGACAAGAACGCGGAACTGCTCAAGTGCTCGAAGTGCACGATCGGTGCTGCTTTCGCGAAGTCGAACAGGATAAACGGTCCGATGTGCGCCGGAGTCCACTTACCGGTATCCGGGAGGACGTGCACGGTGACGTTGT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCATGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 9 4731855-4732004 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4731855 28 100.0 33 ............................ CCGTGAGCGCGGTTTGGATACCAGGGGGATGCC 4731916 28 100.0 33 ............................ GTCCCACGACGGCAATGTGTTTGGGAACCCGTT 4731977 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTAGGCCCCGCGCATGCGGGGATGGACC # Left flank : TATCGACGGCACCACCGAAACCGAGGTCACGGTCTCGGACTTCGAAACGACCAACATCCTGCTCGGCAAACTGGGCTACCGCCCGAAGGCGTACCAGGAGAACACGCGAGTGAGGTTCGAGCTCGACGGCGCCGAAGTCACCATCGACGCGTGGCCGCACATACCACCGTACGCTGAGATCGAAGCCGAGAGCACGTCAGCGGTACTCGCCGTCGCCGACCGTCTCGGGTATGCCGAGCAGGACCTCACCGGCGAGAACACGACCAAGATCTACGCTCGGTACGGGATCGACCTCAGCTCGATCAGCTACCTGGCGTTCCCGGAGGACGCCAACGCGAAGCAGTCGTGAACCGCTAGTGCGGCTCCAAGCACACGAACGATGTGCTATTCCCGTGGCGGAGTACCAGAAAGCTCGTCGCTCCAAGCGGACGACCGGAGGAGGTGAGAACGAGGTGGTTCTCACAGCGCTTTCCCGCCGCTAGAATCCCAGCGCAGTGAGT # Right flank : CGCCTTTGCTGCCGAGCAGGAACCAGCCGTGGATATAGCCCCCGCGCACGCAGGGGAATCTGTCGCCGCGTGCGCGGGTACTTGACCGGAACCCCACCACCGTTGGCGACGCTCGCCGCGCACGCTGGGCGAGGCAGCGGACCGGCAGCCGGTCAGTCGGGCAGTACCTCGCGCATGACCCGGATCGTGTTGCCGCCCATGATCGCGGCGATGTCGGCCTCGGAATGCCCGCGGTCGCGCAGTTCCTGCGTGATCACCGCGATGTCGCTGGTGTCCCAGCCGACCGTCGTCGACCCGTCGTAGTCGCTGCCCAGCGCGGCCGTCTCGATGCCGCCGACGTCGATGACGTGCTCGATGGCGTCGACGACGGCGGCGGGAGTGGTGTCGCAGACGGCGGCGTCCCAGTATCCGATGCCGACGACTCCGCCGGTGCGCGCCACGCCCCGGATCTCCTCGTCGGTGAGGTTGCGGTTGACGTCGCAGGTGGCCTGCACACCGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCATGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 10 4736145-4736416 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4736145 29 82.8 31 ....................ATG.AC... CGTCGGTCAGCCGTATGAGCTGTGTGTCCCC 4736205 28 89.7 32 ...........A........-.......G ATGACGGTCGGCAGGTCCGCCGCGCCGGCGGA 4736265 29 100.0 33 ............................. TCTGATCCGCGGAAATGCGGCCGGGTCGTGACC 4736327 29 89.7 32 ............T.............T.C GGGCACATGTAGCCCTGCAGCACGAAATGCGC 4736388 29 86.2 0 .......................T.GT.G | ========== ====== ====== ====== ============================= ================================= ================== 5 29 89.7 32 GTAGGCCCCGCGCACGCGGGGATGGACCA # Left flank : CACCGATGAACGCCGCCCACTGAGCGCCGGTCGTGGTGAAGTACCCGGCCGAACGGTCCTTCGTGTCACGCACCGCCGCGCCGTCGTTGAAGCAACCGACCTCGACGCAGTTGCTAACCCGGCCAGAACGGCTCGATTTCCGCCAGTTCGTAGGGTGCGGCTTCATCGCTTACCTCCCGGTCTCCCACCAACCCGGCCATGAACCCAACGGGCCACCCAGGCCCACTCTCACGAACGGTAGCGCACCCATCGCCCTTCCGTAACTCTCCACACCACCCTGCCCCGGAAGACAGATGAAATCGCGACAGCACTCCAAGCACACACAGTCCACACAGGTCATAAACTGACCCGAAGCGCAGCACCCCGAAACCTTCCGTGCGGCAGCCCGACTACACACCACCGAGCTCACTCACCACGACCCCGAAACACGACCCAGAAAGAGACCAGAACGAAGTGATTCCCACAACGCGCTCCGCCGCTAGAATCCCAGCGCAGTGAGT # Right flank : GCGCAGGTGGTGGCTGCGAGGACAGCTCGGCGTCGGGGCGAACCGGCGGGAGTGGCACGAAAAAGCGCCTCCGGAACGCATCCGGAGGCGCTGGACCGCTCATCGCGGAATCAGTCGAACCTCTCGGCCTTCACCGCACCGATGAACGCCGCCCACTGAGCACCGGTCGTGGTGAAGTACCCGGCCGAACGATCCTTCGTGTCACGCACCGCCGCTCCGTTCGGGGTACGGCCGACCTCGACGCAGCTCGTACGTTGTCCTGAGCGACTAGACTTCCGCCATCCTTGGGGGTGTATCGTCAATGTCGTTCTCCTTTTCGTCTGCACAGTTGGCGATGAACTCTGCCGACGCCTCGGGGCTCATCGCCACTTCGTGCAGGTTAGTAACCGCATCCTGATACGCCTTTGCGGTACCCGGGTTGTGCAGGGACACCGACGAGTGGTACTGCTCCATGTGCACGATCGGCGTAGCTTTCGGGAACTCGAACAGGATGAACGAGC # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 5073116-5072782 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5073115 29 100.0 32 ............................. TCCTCTTCGTAGTCGCGATTGACGAGCCCGGC 5073054 29 100.0 32 ............................. GCCCGGTCCATCTTCATGGCCCTGTCGTTCCC 5072993 29 100.0 32 ............................. CGATGCGCGCCAGGCGGGGTTCACGTCATTGG 5072932 29 100.0 32 ............................. TCACCAGGTGCGAGTGCGTGACCCCGCCGGAC 5072871 29 100.0 32 ............................. TACTTCTCGATGGTGCCGGTGTACGTCCTGGC 5072810 29 86.2 0 ...........T.C........C..C... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGCTCTCCACGTGCGTGGAGGTGGACCG # Left flank : CATGCCGACAGCGCGATCGCGTGACGCATCGCGCGGGCCTCAATCTCAGCCGTGGTGATCGTCATGGAGCTGGTCTAGCAGATCGGCGACAGCCGCGACACCTCGATGATGACGTATCCGGTCGGCCAGAGCTCGAATATCGTCGCGAACTCTGGCCGCTCCGGTTTCTCGCGCGGCTCTGATGTATTCGGAGTGTCAACGGGGCCGCTTGGGGTGGGGTTGGTGTGGAGTCGTCCGGTTGCCCGTGGGATTTCTTCGGTGTGGTTGTGTTCCAGCTGTCCGCCCGCGTCCTCGGGTGCGTGAGTGTCACGCGGCGGCTCTTCGGCTCGCCTCCGCGTGTAGGTAGATCGAGGTGTCGGTTGGGTTCGTTGCCGAGGCTACGATGGCTCCTGTCCTGAGTGGATCGAGAAGTGCCGAGCCCACGGTCGAGGGGTGGTGCCCTGATGTCGTGGTGGTGTGAAAACGTGCAGCGGCGGTTGTAACGTCGCAGGTCGCAGAGG # Right flank : CGATTGATCAGGAGTGATTCTCCTGTCTCCCGCACCCGCCTTCCCATCACCCGGCCCGCCGCCTCCGAACTCCCCACGGCCGTGCCGGGAGACTTCGGCGACGGCGGGACTCGCGGTGACTCGCGGGTAGGGTTCGGGGCATGTCTACCGCTCTCGTAACCGGCGCCACCGCCGGCATCGGGCGAGCTTTCGCCCGCAGGCTCGCGGCAGAGGGCTACGACCTGGTGCTCGTCGCCCGTGACTCCGAGCGGCTGGCCTCGCTGGCCGAGTTCCTGCGCGACCGCCACGGTACCGCCACCGAGCAGCTGCCCGCCGACCTCACCCGCGAGGAGGAGCTCGCCGGGGTGGAGCGACGCCTCGGCGACGCGACCAGGCCGATCGACCTGCTGGTGAACAACGCCGGGTTCGGCACCTCGGGCGCCTTCTGGGACACCGACCCCGAGACCCTGCGGCAACAGGTGGACCTCAACGTCACCGCGGTGCTGCGACTGACCCGCGCC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGTGCGTGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 12 5074933-5074477 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022752.1 Actinopolyspora erythraea strain YIM 90600 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5074932 29 100.0 32 ............................. ATCGTGCTCGACCGGGTGTTGCTCTGCATATC 5074871 29 100.0 32 ............................. CTGGTCGGCCAGTCCTTGAAATTCAGCTCATC 5074810 29 100.0 32 ............................. GGCATCCCGAAGAACGCGCTCGTGGGGTGGGC 5074749 29 100.0 32 ............................. CTCGTGTTCGAGGAGGAGCGCGAACAGGTTGC 5074688 29 100.0 32 ............................. GCCGCGCCCCGGCCGCGATCCGCGCCGCGATC 5074627 29 100.0 32 ............................. CCGGTAGTGTTCGATCAGCGCGCGCTGCCCGT 5074566 29 93.1 32 ............C.T.............. CGTAGGAGTGGTAACGGCGTTACCACTCGAAA 5074505 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGCTCTCCACGGGCGTGGAGGTGGACCG # Left flank : AGCATCTCATGACTACTCCAGACTTCAGTCAGGCTCGCTGGTACAAGTCCGGCCGCAGCAACGGCGGCGGCTCCGCTTGCGTCATGGTGGCGCACGTGCCCACCGCCACCGGTGTCGCCGACAGCAAGCTCGGCGAGGACAGCCCCGTGCTGCCGTTCGGTAAGGCCGCGTGGTCCTCGTTCGTCGAAGCGCTCAAAAGTGACCGCTTCGGTGGCTGATCCGGTTTCATGAAGTCCCGCTCGGTGTGCCATCGGGCGGGACTTTTCGTGTCTCCGGCCGTGCTGGTTTGTCGTGGTGTACGGGGAGTGTGCCGGTGCTCCGGGCAGACAACTGCCCTGCCCTCGCCACGACGTGATCGGGAAGCTCGGTTGCCGAGGCTACGATGGCTCCTGGCCGGAACCGGTCGAGAAGTACTGAGCCCACGGTCGATGTACGGTGTCCCGATGTCGCGGTGGTGTGAAAACGTGCAACGCCGGTTGTAACGTCGCAGGTCGCAGAGG # Right flank : TGTTTTGTGGAATCTGCCCGGGGCGAGAGGGCGGGTGTCGTGGCTCAGCGCTGAGAACTGGGGCTGGGGGTTTGGGCGTTCGTGCTGTTTCTGCTCAGGGACAGTCGGAGGCCGTTGTTCAGGTGTGAGATCTGGGCCAGTCGGTATCCGTCGGGCAGGTTCGGAAGGTGTGCCGCTTCGTGTGCGCTGTGGGCCTCGATGTGGTCGATCAGGCCGGTGTCGAGGTACGGCTGGGCTGTCACGTGGTCCACGGCCAGTCCGGCGGTTCGGGTTCCGTCGTGGTGGAGCGCGTCGAGGGCGTGGTGCGGATCGTTCGGCAGTGTGAACAGCGGCCTGGAGGTGGGCCACTCGGTGGCGGTGGTCGCGGTTGTGTCGTCGTGGACGAGGGTGTCGATCTCGCGTGGCAGGGCTGTGGCATCGCTTGTCAGGGTTCCTCGCGGGGTGAGGGAACAGCCCCAGGTGAGCACGGGGCGCTGCCGCTCCAGCGCGGCCAGCCACGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGGGCGTGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //