Array 1 2670-171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBB010000002.1 Campylobacter canadensis strain L283 L283_contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2669 37 100.0 37 ..................................... TTTTTAATAATAAAACGCTGATTGTTAAAAATTATAT 2595 37 100.0 34 ..................................... CCATCACCACCACCGCTAAAAGCCAAAGAAGATA 2524 37 100.0 36 ..................................... ATTTTAACTGCTGCTAAAACTGGATTAAGTCCTAAT 2451 37 100.0 37 ..................................... TTGCTATCATCGCTCGTGCTAAGGGTATTACTGCCTT 2377 37 100.0 35 ..................................... TTTATAGGATTAGGAATGCCACCACCAATAGCTTT 2305 37 100.0 35 ..................................... GATTTGCTAACTACAAGAGACTTACGTTCCTTGTT 2233 37 100.0 36 ..................................... TAAAGTCGCTGCAAAAATTAACAAGATTAAATCTTG 2160 37 100.0 36 ..................................... TTTATGGCAAGTTTGAATTAATACATTTGTGTTGTA 2087 37 100.0 36 ..................................... GTTGTGGTAATAGATAAACCACTTGAAGAAAGGATG 2014 37 100.0 37 ..................................... TTAAAAATATTTTTCCAAAAAGTTATGTAAGCACTTA 1940 37 100.0 35 ..................................... TCAAGCTCTAGCACACCACCAGCCACGATTTGCTG 1868 37 100.0 35 ..................................... AAAGATTGGGGTTTTGAAGACAGTCAGAATGCTCG 1796 37 100.0 36 ..................................... TTTCATACTCTTCAAAATTAGCATATCTTTCAACAT 1723 37 100.0 35 ..................................... AATACTTTAAATGCTGATTTCTCTAATGAAGAATT 1651 37 100.0 36 ..................................... TCATATGTTAATAACGAATATTTAATTAACGTTGAT 1578 37 100.0 36 ..................................... TCATATGTTAATAACGAATATTTAATTAACGTTGAT 1505 37 100.0 35 ..................................... GTAGTACGAATTAAACATCTTTTTCCAACTTCATA 1433 37 100.0 35 ..................................... CTAGCATTTAAAGATGCAGACAATTCGGTTTATCG 1361 37 100.0 35 ..................................... TTCAGTTCATTATCGTCATTATATCGCAAATTTTG 1289 37 100.0 34 ..................................... ATTTCGTGAGCAATAAAAGTTGCTTTATTATCAA 1218 37 100.0 35 ..................................... GTTTGTGTCTGACTGCCTGTTTGTACCCCGCCTTC 1146 37 100.0 36 ..................................... TTATCCAAAACGCCAGCACCGGTAGTCCGAATCAAA 1073 37 100.0 36 ..................................... TCATATGTCAATAATGAATATTTAATTAATGTTGAT 1000 37 100.0 34 ..................................... AGCTTTACTAAAGTAGTATCATCAAGCTCTACAA 929 37 100.0 37 ..................................... TATAAAAGATGAAAGCATTAATGAGCTTTCACCTTTG 855 37 100.0 34 ..................................... TATCTTACACATCGTAAGTAAGGAGCCAAGTTTT 784 37 100.0 34 ..................................... CTATATGCTCAATATTAGGTGCTAAGCGTCTTAG 713 37 100.0 35 ..................................... ATCAGTGCCTAATGCTTCTTCTACTTTTTCGTTTT 641 37 100.0 35 ..................................... GTTTGTGTCTGACTGCCTGTTTGCACCCCGCCTTC 569 37 100.0 35 ..................................... TTATATAAAGTTGATTGAATACTATTAAAAATATT 497 37 100.0 35 ..................................... AGCCTTTTAAAATCCATTTGCTACCAATTCTTGAG 425 37 100.0 35 ..................................... AGCCTTTTAAAATCCATTTGCTACCAATTCTTGAG 353 37 100.0 36 ..................................... CCTTAGTGCGGTTTTTTTTAAGGTAATTTTTAAAAT 280 37 100.0 36 ..................................... GCAGTCGTATTTCTTCAACACTACAACGGTCATTTA 207 37 94.6 0 ................C............C....... | ========== ====== ====== ====== ===================================== ===================================== ================== 35 37 99.8 35 CTTTCAAACCTAATTCTAGCAAAACATGGTTTGAAAC # Left flank : CCTTCTAGCTAGTCTTGTTCTTTTAAAACCTCTTCTTTGATGTCTTTTCTTGGTTCTATCTTTTTTTAAAAAATTTATAGAAGATGGTTCAAAGATATAATTCGTAGCAGTTTTATCTATAATCTTGCCATCTTTTGTATGAGCTAAAAACACCCCATTATTTTTCGCTCCCATATCTATACTAATGTGAGTTTTCATGATTTCTCCTAAATTTATGTTTTAATGGAATTTTATTTAGCAAAGATTAACTAATAAGATTTATCGGGGTGGCTAAGCCAGTTGCCCGATATTTTACCAACCTTGTGGTGATTTCAAACTCTTAAATATTTTGCTAGAATTAGGTTTGAGTTGATATATTAGGCTAAAATTCTTAACCATAAGCTTAAATTTTTCTTATTTTTCCACAAAACGGCTGTTTTTTGCCGAAATTTTCAAAGTGGAAAAATAAGCAAACTTTAAGTTAGCTCAAATCCTTACAAGCTAGACAAGTTTATCTAGCT # Right flank : CACAATTTCTTCTTATTTATCTTTTGCTTACTGCACTTCTTTAATTTCTCTAACCAAATTATTTATCTAAAATATATTGATTATTGTAAGTCTTAATTGTTAGTTTGGTAAAAAGCTATATTCTTTAGCAAGTGGTATTTTTACATTAAATAACAGATTAAGCAGTGTGTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAACCTAATTCTAGCAAAACATGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 37612-38967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBB010000002.1 Campylobacter canadensis strain L283 L283_contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 37612 35 100.0 31 ................................... TTTAAATAACTGCGATGATAGCTTTTTAATT 37678 35 100.0 31 ................................... TTTTCTGTGCGAAAAGGTTTAGATAGTTATA 37744 35 100.0 31 ................................... TATCAATATCCACTTTACCTAATGTACAATC 37810 35 100.0 31 ................................... TTAATGCATTAACAACCTTTGTTGGTGTTAA 37876 35 100.0 31 ................................... TCATATTAAATCAAATGGATTTAGATGATAG 37942 35 100.0 32 ................................... TAAAATATACGCAAAATGCTAAAAAAAAATGT 38009 35 100.0 31 ................................... TTATTTTTTCTTTTTTATTTTTTATTCTTTT 38075 35 100.0 31 ................................... TACTTTTTTTACTAAATATAAAGATGAAAGC 38141 35 100.0 31 ................................... CTTTGATGCACGTATCGACGCTTTATGTAAA 38207 35 100.0 31 ................................... CCAATTTACTCAAGATTATATTTACGCAGTA 38273 35 97.1 31 .........................T......... CTTATGATTGTAAAATCAGCTTTAAAGAACT 38339 35 100.0 31 ................................... CGCTGTTTTTAGATTTTATACTAATTCTGAT 38405 35 100.0 31 ................................... CATATCTTCATTACTTATAAGATTTGTTAAA 38471 35 100.0 31 ................................... CAAGAATTAATTATTTTTCTTGTAAGTAATT 38537 35 97.1 30 ......A............................ CTTGCTTGGCTATAAATGTGAATCTTCTTT 38602 35 100.0 31 ................................... CTAAAACAAACCTAACCTTTAAAAAATTTAT 38668 35 100.0 31 ................................... CCATTTTTATTCCTTAATATTTTTTAAATGA 38734 35 100.0 32 ................................... CTCGTGGCGGTTATGAATGTTTTAGCTCTTCT 38801 35 100.0 31 ................................... CTAACTCTTTAACTCCAAAAACTTCAAAAAA 38867 35 100.0 31 ................................... CTAATGATAAAGTATATAGACTTTATCATTC 38933 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================ ================== 21 35 99.7 31 ATTTTAGCATAAAAGAATTTACAAAGGGACTAAAA # Left flank : GTAAATTTAGAAACAATCTTATAAAATTAGGTTATTTTATGCTGCAATTTAGCGTTTATATGCGTATTTGCAAGGGTTTAAGTTCTGCAAAAAGTTCTCTTGAAAATGTAAAAAAGATTTTGCCACCTTATGGAAATGTGAGAGCTTTAATCATCACTGAAAAGCAGTTTGATAAAATAGAGCTTTTGCTTGGTGGCATGTCTTTTAATGAAGAAAAAAATAATGAAGATAATTTTTCTTTGTTTGATTGTTTGCTTGAAAAAGAAAATACTAGCGAAAATATTGATAAAAATGATGATTTTTTTGAAGAATTTTAAAAACTAATTTTAAAGATTTTATAACAAAAAATATTATTGAAAGCGGTTTTAGGGGATTGTAACCCCGCAAAGTCCCGCAAACTTTTTATTTTAGTCCCTTTGTAAATTCTTAGCTTTATTATATATATTTTTGCTAATTTTTTTCTTAAAAAAGCCCTTTTTGTCGTTGTTTTAGTAAGGTCT # Right flank : ATTTAATTTTTTGTGTTTTTGCTTGGCTTTTATAAGCGATAAGCTTAGCTAAAAACTCATCGTTTTCAATTAAATCTATAAACATTTCTAAATCTAACCCCATTATTTCTCCTTTTTATTGTAAATATTACAAAATATTTTGTAATTTTAATAAATATATACTAAAATACTCTTGCAATTAAAAAAGGAGAAAAAATGAGTGGAAAAGAATTTAATGAAAGAATAAAAAAATTAGGCTTAAGTGTAAGCGAGTTTGCAGAATTTACAGGACTTACAAAAGACGCTGTTTATGGCTGGAGTAGAAGCAGTAAAACAACGCCTGAATGGGTGAAATCTTGGCTAGATAATTATGAAAAAGCACTACTTTTAGAAAATATAAAAAATGCTTTTTCACAAGCGTTTTTAATAGATAAAAAATAATTGCAAATAAATTCTATGAATTTTATAGAAATTGTTTTGTATATTTTAAGAAAATCTAAAATAAGTTTTAAATAATTTAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAAAAGAATTTACAAAGGGACTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 19578-19332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBB010000021.1 Campylobacter canadensis strain L283 L283_contig00021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 19577 37 97.3 32 A.................................... CCATAAGGCTTTCATATTAAAACTAACCTCAT 19508 37 100.0 33 ..................................... TTGTAATCAGGCTTAAATTCTTCATGGTATTGC 19438 37 100.0 34 ..................................... CGCACGGCGTGTGTCCTTTATTATCCACTCCCCT 19367 36 91.9 0 ................................-..GG | ========== ====== ====== ====== ===================================== ================================== ================== 4 37 97.3 33 TGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TTTTACCTGCCTCAACGGCGTATTGTGTGGCGATG # Right flank : TTCCTGTTACATTTGGGATATAATATTTTCTTAAAGCTATTTAAATGATGTTATTAAAAGAATTATTTATTTAAAGTTTTTAAAAGCTTAATATGCCTTCTATTAAAATATAAAAAGTAATAAATATGATAAAAAGTTATAAGCAAAATCACCACACTTATTTTTTAGTTTCTAATATTATTAGCACATTTATTAATTTTTATATTTATAAATAATTAAAAAATTAGGCAACTTACCTTAGATAAGAGTTTTTAACATTTTATTACTTTTATATATAGCTTTGAAAGTTAGTAACAAAAAACAAATACGAATAAGGATTAATATTGTAAAAAAATTTAATTTTTTTTATTAATACTGTGTCTTTATTAACCGTGGGGGGGGGTATAATGATATGAAATATAAAGAAAGGAGTAAAAGATGGATAAAGCAAATGCAAACCATAAAGCTAATCAAGCAAATGCAAACAAAGGTAGTGCTGGACAAAATAAAGCACATTCTCA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 36-284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBB010000051.1 Campylobacter canadensis strain L283 L283_contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 36 36 100.0 35 .................................... AATATACATCCTTGCTTGCAGTTTTTTTTCATATC 107 36 100.0 34 .................................... AATAGGCTAATTGCTAATGCTTGACTTTTTAATG 177 36 100.0 36 .................................... CTATTCTGTTTGTTTTACTTAAACTTCTCATCTTTT 249 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 100.0 35 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : ACTTGATGAAACCAGATGAAAAATCATAAGTCGAAG # Right flank : CCCTTGCCAGCTTATTTTCAAAACTTTCATCAGCTTTTGTGCAAGAAAATTACTATTTATTAGATTAGTAAAAAGAAGTAGCAAAAATAATTAAGCTATCTAAATACGAAAACGCAAGTAAAAATGAGATTGCAAAAGTAATTGATAAATATTTTGCTAAACTTAAAGAATAAAAAAATCAAAAAAACACAAAAAGCTATAAAGCAATTACAAAAGTTTTTTAATCAAAGCTTGAAAACTAACAAAACTAAAAATGATAAGTGGCTAAAAGAATATTAAAAGTAATGAATTTATAGAAGCACTAAAAGAAGCTGAAGAATTAAAATAGCTTATTTGCGTGAAGAAGTGCAGTATTTAGAAGTTAAAGAATTTGTTAAGGAAAGTATGAAATGATAAAGCTAATTATTAAAGAACAATAGCATATAAAATAGCTTTAAAAAAATTAGGTAAATATAATAAAAAAAACCAGCAAACAAAATCATTCATTGTTTAGCTAATGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 42578-41265 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBB010000014.1 Campylobacter canadensis strain L283 L283_contig00014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 42577 36 100.0 34 .................................... AAAAAATATATTTTATCATTAAATTACATTAAAA 42507 36 100.0 32 .................................... TTCTAATTGCTAGTGGTGGGATAGCAAATGTT 42439 36 100.0 36 .................................... AACAATGTTCCGCATAATATACCATCTGCATCACTG 42367 36 100.0 35 .................................... TTTTAAACTCAATTAAATCCTCAATTGGAAAATTA 42296 36 100.0 37 .................................... GGAGTGAGATTGATTTTAAAAATAATATTATTAAAAT 42223 36 100.0 36 .................................... AACAATGTTCCGCATAATATACCATCTGCATCACTG 42151 36 100.0 36 .................................... CATAGGGTTATGTTTGCTAGTATTTCTACCATTATT 42079 36 100.0 37 .................................... TCAACATCTTTCGTTAGTCTTCCTGTAATGAATACTT 42006 36 100.0 32 .................................... TATTTTGAAAGACTTGCCAGCTTACTTTCAAA 41938 36 97.2 32 .............A...................... AAATCGCTCATTACCATTCTCCTGTAATTTTG 41870 36 100.0 34 .................................... ACAGGGGTAGCTACTAAAAGATTTTTTTACTTAT 41800 36 100.0 36 .................................... AGATATGGCGTATCGTTTACAACGATACATACCCCA 41728 36 100.0 33 .................................... TGGTATGATGCCACGTCTATGTATAATTCCATA 41659 36 100.0 35 .................................... GCTTGTTACCCAAATATTGTTCCATTCTCGATATT 41588 36 97.2 36 ...................T................ CAATACCCGCTAGAAGGGATAAATCTTTTGGACAAA 41516 36 97.2 37 ............A....................... TTTCAAATCTTGTTTTAATTTAGTATATTCATAAATA 41443 36 100.0 36 .................................... CTGTTTGGCAATTAACCCAACATTGATTCCCCCTAC 41371 36 100.0 35 .................................... TTTACATCAATTGCTTTAATTTTGTTTTTCATACT 41300 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ===================================== ================== 19 36 99.4 35 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : AATGTTATAGGCTCTATACTATTTATTGCGTAT # Right flank : CTTAGAATACTTTGGGATAAGATAAAAGATATTAGAAATCCTATGTCGCACTGTACTACTGAAAATATCAAATTTGATGTAAATAAAGAACTTCAAAGTTGCTTAGATGTATATCAAGATTATATTATAAAAAATGATGTTTTAGCTAAGTAGTTTTAAGGCTTTTGCCCTAGCCTACTTAACTTTTTGTATTAAATAGTTATTATAAACTATATTATCTTTAAAACTCCCTAAATTTTATATGCTTAAAAATGCTTTGTTTTACACCGTTTTCATCTTTTAAAACCTCTCTTTTTGTGGTGGCATAAACGGGTTTTAATGATTTTGCTTTAGCATAATTTATAAGCTTAAAGCATAAGCCAAAATCACCGCTAATAAGCAAAAAATCACCTTTTTTAGTATTTTTATCAATGTATTCATAAAAATCCTTTGCGTAATCATCTAAGCTATCAAGGCTGGGCGGAACATTTGAAAACCTAGTTTGTAAATCCTTTGGCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 773-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBB010000075.1 Campylobacter canadensis strain L283 L283_contig00076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 772 36 100.0 35 .................................... CACGCTCGATGGCAAAGAAGAAGAATTTAATTATT 701 36 100.0 33 .................................... TTAGGACAAGTGCATTTAATTGTATTTGACACA 632 36 100.0 34 .................................... AGTACTAGGCGGAGCAATGTTCCGCACAAAACTC 562 36 100.0 34 .................................... TAAGTCCTGCTCTCCGATTTTAACATCACCTACA 492 36 100.0 35 .................................... TAACATCACCTACATAAGGAAGAAGACACATCTTG 421 36 100.0 33 .................................... CTGTTTATAATTTCTACTCCAATATTGTTTTTT 352 36 100.0 36 .................................... ATAATATCACTTTTGTTAAAGGTATCTGCAGCCGCT 280 36 97.2 32 ....................C............... TAAAGGCTCTAAATCCGTATTATTTGCTTTAG 212 36 97.2 36 ....................C............... AGTGAAGTGGTGGTCCACTACTATATAGTCAATACC 140 36 97.2 32 ............A....................... TTTTTCTAAAATGTGATACGAGTCATCCTCTT 72 36 94.4 0 CG.................................. | ========== ====== ====== ====== ==================================== ==================================== ================== 11 36 98.7 34 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : AAACTGCTTTAACTCTTTTTGTGTTGGGTAA # Right flank : CTCTTTTAGACACAGCATATATATATGTATGCTGTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : GTTTAAGAAGATTGCCCCGCCTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //