Array 1 2326770-2331141 **** Predicted by CRISPRDetect 2.4 *** >NC_003869.1 Caldanaerobacter subterraneus subsp. tengcongensis MB4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2326770 30 100.0 37 .............................. CAGTTTCAAATTGGATATAAAGGTTATATTCAACTCG 2326837 30 100.0 37 .............................. ATATAGCTAAAGAAGTTAATAAACTTATTTCTTGGTT 2326904 30 100.0 37 .............................. CTGGGCAAAAGAAGCAATTGTGAATATGTTTCAGAAA 2326971 30 100.0 38 .............................. TCATCTAAAACCGTAAGCTTATACGTCACGCAAATTGC 2327039 30 100.0 37 .............................. CCAAGGCTTTGGCGACACATCAGAAACCATATGTAGC 2327106 30 100.0 36 .............................. CTAAAAACAAAAGGCTCGCAATTGCGAACCTGTTCC 2327172 30 100.0 37 .............................. TGCCCCATGATTTAAGTTTGAGTAAGGGACTCCGTCA 2327239 30 100.0 37 .............................. GATTTTTTTATAGTGATAATCTTACGGTAATCTTCTA 2327306 30 100.0 36 .............................. ACTGGAAAAGAATGCGGACAAGCAAAAATCCTCACG 2327372 30 100.0 37 .............................. AGCAATAAGCTCTTTCCAGTTCATTTGATTTTGCACA 2327439 30 100.0 36 .............................. ACTTTCAGATGAAATAGCAAACAATCTCACAAAAGT 2327505 30 100.0 38 .............................. TGTTTAACCGCTTCTTCTATGGCAAGAAGTATTACGCC 2327573 30 100.0 36 .............................. TCTATAGCTTCTTTTTCTAAATCAGCTATTGGTAAG 2327639 30 100.0 37 .............................. TTGGTAACCGAGACCCCCATAAACCTTGATTGCTATA 2327706 30 100.0 37 .............................. TTCCATACAAATCTACAGCAACCAAAAGTCTTTTCAA 2327773 30 100.0 36 .............................. AAAATGGACAAGTTAGACATAGCTTTGAGTTTTGGA 2327839 30 100.0 37 .............................. CACTGAAAGGAGGCGAAGTGAATGAACAGAAGATGCG 2327906 30 100.0 36 .............................. CTTATGACTTACTGGCTATACTTATACCCGCCCTGG 2327972 30 100.0 39 .............................. ATATTACTGCTCCCTAAAAAATCAAATTCTTTATCGAAA 2328041 30 100.0 37 .............................. AGGCTACACGACACAATCTGGCTGTCATCTTTATATG 2328108 30 100.0 36 .............................. GGCTAGACATTATAAACACCTTATCCGAACACTATA 2328174 30 100.0 36 .............................. ATTTTTGTTCGGTTCATACACTCACCTTCTTTGGCC 2328240 30 100.0 36 .............................. TTGCGCCTCCGCACTTCCCACAGTATATCAAACCGG 2328306 30 100.0 36 .............................. GCCTCACCGGCCACGAACTTACCTATCGCCATGTTG 2328372 30 100.0 36 .............................. ACTGGCGATTTATTGGCAGTTTTAATGTTGCTGCTT 2328438 30 100.0 38 .............................. AACTTTCCACTCTACTATGTAACCTTGTGCATGTCCTA 2328506 30 100.0 38 .............................. TTTAATACATCATCTCTGTTCGGAAGTAGTATTTCAGC 2328574 30 100.0 36 .............................. ATTTCGTTAGCTGATATATTACCCACCGGTAGGCTA 2328640 30 100.0 36 .............................. CTGGTGGAACTACTACCCAGAAGGGGTCATAGAGGA 2328706 30 100.0 36 .............................. TGAGCTGCCGGAGTTCAACTTCAACTACGAAGGCGA 2328772 30 100.0 37 .............................. ACGGCAATCCATTCATGCCAGTGAGGGCAACAGTGTC 2328839 30 100.0 38 .............................. GCCCAAAAAGGAAGGCGGTAAGTATGAAAAAACCTATT 2328907 30 100.0 37 .............................. CTTCATAAGCTTTTTATAACCTGCTATTGTAGTCTGT 2328974 30 100.0 36 .............................. CCTCAACCCTCTGCGGCAATGCATCTTGCAGCTCAG 2329040 30 100.0 36 .............................. CCTTAATTAGAAAAGCACAGCGGGTAGGATACGACG 2329106 30 100.0 36 .............................. ATCCATGGACGTGACTCCGGTCTACAGCCGTGAGTC 2329172 30 100.0 37 .............................. GACAACAAAGCGATGTAGAGAGTGGAGAGATAGCAGT 2329239 30 100.0 37 .............................. AGCGTTCAAACTGCTCTTCAGACAATTCATTTTCCGT 2329306 30 100.0 35 .............................. GTACTAGCCAGTTGTTTAATTCGTCCCTTATCCAA 2329371 30 100.0 37 .............................. TGGTATATGTAGATGGAATAGGCGAAGTACCAATACC 2329438 30 100.0 36 .............................. TATAGTCCCTATAACAAAAAGCCCGCCCAGTTGAGC 2329504 30 100.0 37 .............................. AAACCTTTCATTCTAATAACACCTTCCCGCTGTATAG 2329571 30 96.7 36 ........T..................... TTGAGAGTGTTCCTTCAGCGAGGCTGAGGCAAAATG 2329637 30 100.0 37 .............................. CTATAAAAACATAGGAGAAGACCTTGTCATCATCATG 2329704 30 100.0 38 .............................. ACAGTTCTAACGTGAGATTGTGGACAGGTAAACTATTG 2329772 30 100.0 36 .............................. CTGTAATGGAATTCTTTGCAGGACGCAAGCCACAAA 2329838 30 100.0 36 .............................. TTAACTGAAGACCCAAGAAGCGAAGAAGAGAAAGAA 2329904 30 100.0 37 .............................. GAGCTGGTAAGTAAGTATTTTCCGGCTTGGTATTTAG 2329971 30 100.0 37 .............................. GCACAAATGAGTTAAGTAGCTTCAAGTACGTTGCATC 2330038 30 100.0 37 .............................. TGTCAAGATTGTCACAACAAAGAGCATAGTGCAAAAA 2330105 30 100.0 36 .............................. AGGGTAGTGGCAAGCTAAATGTAGAAGGATTAGCTA 2330171 30 100.0 36 .............................. CCAATTAGTGCAGGTGTAGGCTTTGTAACAACTCCT 2330237 30 100.0 36 .............................. AGGGTAGTGGCAAGCTAAATGTAGAAGGATTAGCTA 2330303 30 100.0 38 .............................. TCCTTTTTATCAGCTCAGACCTGAAGAAAGAGCGAAAA 2330371 30 100.0 37 .............................. CCAGCATTGTCTAAACACTTAAAGAAGCGCAAAACAG 2330438 30 100.0 37 .............................. CATATACTAAACTGGGGTAGTATGCACATTTTTCCGT 2330505 30 100.0 37 .............................. AACTGAGCGGACCCTCTAAACCTGGTGTTGGCCCAAA 2330572 30 100.0 37 .............................. GAGGCTCAAAAACAGGCTATAATCGCTTTAGTGAAAG 2330639 30 100.0 39 .............................. GCAACAGGGAAAAGAAAAAGGATTGTGCGATATGTAAAA 2330708 30 100.0 38 .............................. AGGCACCTTACGATGATGCCGCAACGTATTCAGGTACT 2330776 30 100.0 38 .............................. TGAGCATGTCCTCCAAGGCGCTGAGAGAATTAGACAGG 2330844 30 100.0 37 .............................. GGCATTGCTTTGAAATGTAGAAGTCCTGTTATGTAGT 2330911 30 100.0 37 .............................. AATCCCTTAACAATCCCTTTTATTGGGACCCCTTTAG 2330978 30 100.0 36 .............................. GATGAGGAGTTGAATAGGTATCAGGATATTATTGAG 2331044 30 100.0 38 .............................. AAATTCTCTCTGTCAAAATATTGCACTTCATTATAAGC 2331112 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 66 30 100.0 37 GTTTTTAGCCTACCTAAAAGGGATTGAAAC # Left flank : AATAAAAAATTGCACAGCCCGCAGCAGAGGAAACAGCAATATATCAACTATTTCTTCATCAAATACTTTTCGAAGTCTACCATATTGGTATTATGAAGAACCTAGTAAAGCGTAGATAAAACAAAAGTAATAAAAGATTAACTAATAGTAACATCAACAACAAGGGTAAAATTAATTTGCTCTATATCCTAGTGATGCGTGATATAAAAAGATGACATTATGAAATCTTTATAAGTTTTTACATGTTTCGATAGAGAAATTTTAAGAAAGCAAGCTGAGGTAGTTTTTATGGATATTTCATGGCCTATAAAGAGGCAAAAAGTTTTTGTCGTCGATCTCCAATAATGCAAAAATTCTTGGAGAACGACGACAATTTTATTTTTTGGTTTTATTAAGGTAATTGATTTTAACGAATAATGTGATATAATAAAGCCAAGATACTTGACAAAGGCATTATTAAGAGTAAAATTTTCATCCACTTTTTATGAGGGCTTGAACGT # Right flank : CAAAAATGCCAAGTTAATTTTGGAAGTACAAGAAGAGCAAACACGGATGTTAAAGAGGATGTCAATGTGTTTTCACTTTTAAATGCTGATACAGATTTTGATTTAAAAGAATTTAAAGTTATAGTAAACGAGCCTTCTGTGAATAGCGTTAATTCTTTTGCAGTGATAAAAGTGGAAGTGGATGGGGTAGAAGAAATAGGTGCTGCAGATGGAGATGGGCCAGTATATGCTCTTGATAATGCTGTAAGAAAAGTACTGGAAAGGTTTTATTTACAAATAAAATAGATAAGGTTGACAGATTATAAAGTCAGAGTTTTGGATTCAAGTTCTGGAACTGCTGCTAAAGTAAGAGTTATAATCGAGTCCACAGATGGTAAGGATTCTTGGAGCACTATTGGAGTCTCTCCAGACATTATCGAAGCTAGCTGGAAAGCTCTCGTTGATTCAATAGAGTACAAATTGAATAAAGAAAATTAACTTTGCTAAAAAATGGGGCTCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTAAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 2538953-2537224 **** Predicted by CRISPRDetect 2.4 *** >NC_003869.1 Caldanaerobacter subterraneus subsp. tengcongensis MB4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2538952 30 100.0 39 .............................. GAGGATGGGGTATACGCTGCCACAACCGGTAGAGATAGA 2538883 30 100.0 37 .............................. AGTACAGATTCTACAACTATATTTCAAGTACAAAAGT 2538816 30 100.0 36 .............................. TCATTCGAGCCCTCTTTAAAAAAGAGGGTTGGAACG 2538750 30 100.0 38 .............................. CTTCATTTTTGCTATCATTAGTGTATAGTTTCCCATAT 2538682 30 100.0 36 .............................. TATACTATGTTTTTATCATCAATTTCCAGCCTTCAT 2538616 30 100.0 37 .............................. TTAAGCCCCACAATATTAACTTCTTTACCATAGTGAC 2538549 30 100.0 40 .............................. TCGCAAATACAAAATCTTCCATGTTTATGTTGTACTGTAA 2538479 30 100.0 39 .............................. GCATGTTGGTCCGGCGCAAAACGTAGTAGTTGGCCGTGT 2538410 30 96.7 40 ....................C......... ATTTACATCCAAGTAACGTATTGTTAATCTCCCATCGCTG 2538340 30 100.0 41 .............................. GTAAGTCTTCTCTTTCTACCGCTTGTACTTCTTGTCTGCGC 2538269 30 100.0 40 .............................. TTTGCGGGCACTTTTTATGTTTCCTTTTCTTCGTTTAAAA 2538199 30 100.0 37 .............................. TCGTTTGTGCATTGTCTGCCGAAAGAAGTAAGTCATA 2538132 30 100.0 37 .............................. ATTGTTATCACACCTAACATGGACTTTATTATCGTCG 2538065 30 100.0 38 .............................. CGTGATACAATAGGTGCACACGTGCAGGGACATAATTA 2537997 30 100.0 40 .............................. TCTTCAGCTGGACTATGAAAACCTAAAAATCTTGCGACAG 2537927 30 100.0 36 .............................. TGCTTCTAACTGTATACGTCTGGGGCAGGCCCCCGC 2537861 30 100.0 40 .............................. TTCAAAAACGGTTGGGACATGCCAGAATACAGACTACATT 2537791 30 100.0 38 .............................. CTTCTTCTTCAAGAAAATCTATATTAAGAATTGTTGAC 2537723 30 100.0 37 .............................. CTGGGAGCCTTAATCCCGGCAAATATGGTGGGAGTGG 2537656 30 96.7 37 .................A............ TCTAATCTCTTTAAGAAGTAAAATTCTTACTAGCTGA 2537589 30 100.0 37 .............................. GTGATAGGATAGATTTTAATCCTCTGAAGCGTTCTAT 2537522 30 100.0 36 .............................. CTCGTTCGTGCTGGTTTTCTTCTGATTTTTGTTATT 2537456 30 100.0 40 .............................. TGTACATTGCGGCTTGGCTCGCCGAGGAGGGCTATGATGT 2537386 30 100.0 36 .............................. TTCCTTTCAGATAGGATTTGGGAGAAGTCTGAAAAG 2537320 30 96.7 37 .................A............ TAACGACTCCAATCCTGACCTGCCTCTACATGTTTCG 2537253 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ========================================= ================== 26 30 99.5 38 GTTTTTAGCCTACCTAAGAGGGATTGAAAC # Left flank : GAAGGATATAGAGAATACAAATCAAACCCAGAAAAATGTAAAAACTGTCCTCTAAGAGAAAAGTGTACCCAAAGTAAAGACTACACAAAGAGGATATTCAGGCACATATGGGAAGGATATGTAGAAGAAGCAGAACACCTAAGGCATACACCTTACTGTAAAGAAGTATATGAGAGAAGGAAAGAGACAATAGAGAGAGTATTTGCAGATTTAAAGGAGAAGCATGGTTTGCGATGGACGACGTTAAGAGGGAAGGAAAAATTGTCCATGCAAGCGATGCTTGTTTTTGCTGCCATGAATTTAAAGAAAATGGCCTTATGGTTATGGAGGAAGGGCAAAGGGCCCTTTGACATTTCAAAACTTTATCCATTATTTGGAGTTTTAAAGAAAATTTTATCCAGATATATACAGCCCCTGCTTTCGGTACTAAGAAAACAGGGGCTAAAATTTTGCTTTGTCAACAAACTGCAAGCTTCTCTCTTGAAAGAGAAGCTTTTAAT # Right flank : AGGTTGTGCTAGAGAGTTTCCTGAGCTGTAGTGAAGGTTTTTGTGTTTGCTATATTGACATAAATCCATAAAGTGGTTATAAACTGTTTTAATCTTTCTTTCATATTGAAGAAGCTCACGAAACTTTTTATTTACTTTTTGGTAAAAAGTTGCTTTTTAGAAAGGAGGGATGACTGAGAAGAATTTCTTATCAATAAAAGAAGGAATGGAGATTTTTAGTACGGAGCTAAAAGTGTGAGGGAGGTCTATAGAGTTGAGAAAATTAAATAATGTGATTTTTAAGGTATTAGTCTTATTACTTGTTTTTACTTTACTTATGTCTTTGCCCCCAAAACGTAATGCAAAAGTACTAGGGATTGAAATAGTAGAACTCCCGAATGATCCAAAATTTGAAAATAATAATATAATAAAAATGCCAAAGTAGCATTAAAATATATTGAAGGCGTTATGGTAATGCCTGGGCAGATTTTCTCTTTTAACAAAACAGTAGGAAAACGAAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 2555097-2540585 **** Predicted by CRISPRDetect 2.4 *** >NC_003869.1 Caldanaerobacter subterraneus subsp. tengcongensis MB4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2555096 30 100.0 37 .............................. ATCTTTACCTTGTATATATCTTAATCGCATAAGTAGC 2555029 30 100.0 37 .............................. TCTTTAATTCTCTAATTTTTCTCTTTACGTATGTCTT 2554962 30 100.0 38 .............................. GAACACCGCTGGCTTTTCATTTTCTTTTGCATCTCTTA 2554894 30 100.0 37 .............................. CTTAAATGGATATGATACTACGCTAATCGGTGCTGTA 2554827 30 100.0 36 .............................. TTGTATCAGCTACTCAAACAAAACCGTAGGATAAGG 2554761 30 100.0 38 .............................. TTTTGAAATGGTGCTTGACGAATACATCGGTAAAGAGT 2554693 30 100.0 37 .............................. CTATTTGTAATAGCTGTGTTTAATATCGGTGTACCAA 2554626 30 100.0 38 .............................. AATGGTATGAAAAAAATAAAGATAAGGAAGGCTTTCAA 2554558 30 100.0 35 .............................. GACTTAGAAACTTTGCAAAAGATAGCCGATTTCTT 2554493 30 100.0 37 .............................. TCGAGCCTCTAGGGTTTTTACTTTACAGTAACGCAAC 2554426 30 100.0 35 .............................. AACACTGAAGAAGGAAGGTTAAAAATTATGTGCAA 2554361 30 100.0 36 .............................. CATCAGCGATTCTGATTTTTCCTTTTTGCAAGCACC 2554295 30 100.0 38 .............................. CTTCATTCGCTCATCCTCTCATTTAGAATTTGTGCTAT 2554227 30 100.0 37 .............................. ACTAGCTCCTCATATTCTTTTGTTTTACGTGGAGTGT 2554160 30 100.0 37 .............................. CTTGTAGCTGGAGTTTGCGCTTTGATAAGCAATCTAT 2554093 30 100.0 38 .............................. TAGGAACATTCACAACTGCATTATGCACACCAGAGCTG 2554025 30 100.0 37 .............................. TGTCCCGTGTGGGCTTTCGGGTTTTTCCAAAACTTGT 2553958 30 100.0 36 .............................. AGCATGAGAAAAAATGGTGGAGAAAGAATAAAGGGC 2553892 30 100.0 36 .............................. ACGACTATGAAATTTCTTATACCTGCTTTCACTTGC 2553826 30 100.0 36 .............................. AAAGAACTGCAGGTTGTTACATCTATATCAGAGTTA 2553760 30 100.0 37 .............................. CTATAAAGGGAGTGATAAAATATGGCAGTTGAAATTG 2553693 30 100.0 38 .............................. TCTGAGCTTGACCCTATTGTGAAAACTTTCACAATCCC 2553625 30 100.0 37 .............................. CTCCTATATCATTTGGAGTGATTTGTTCGATAATTTG 2553558 30 100.0 38 .............................. TTTACAAAACCCCCTTTATCATGAGTTGATATATTACC 2553490 30 100.0 35 .............................. AATACTGCAAGGAAAATAAGAACGATTATTAATAC 2553425 30 100.0 36 .............................. GAAGCTGGAAAAACGCTTTACAGAAGCTTCCAACAG 2553359 30 100.0 36 .............................. CTGTTGCCATACTTTGCCAGTATGGTTGGCAGTATG 2553293 30 100.0 37 .............................. TGTATGACGTGTAGGGTCGGTGTGAGTAATAAATGAA 2553226 30 100.0 37 .............................. GGTCGATTACACCGGTCGTGTCAGATGTGCTTTCCAG 2553159 30 100.0 38 .............................. CGTTTTTTGATAATATTTAGCTATTCCCATGATTTTGA 2553091 30 100.0 36 .............................. GATGTGTCATCATATATTCAATATCTTCTTCAGTTA 2553025 30 100.0 37 .............................. TTCGGTGTTTCGACTGTTAAAATGTACTCATCGGCAA 2552958 30 100.0 37 .............................. GATGGCAATATTGCTCGCTGGTAATTGAGGTGTTAGC 2552891 30 100.0 35 .............................. TTGAAATTAGAATGTATAAGGCTTAGAAGGTGTAA 2552826 30 100.0 36 .............................. CTTAAACGACTAAAATTGACTCAGAATCGTTTCTGA 2552760 30 100.0 38 .............................. CCCCTTGACCTTTTTTTGATTTTAATCTTCTATTTCTA 2552692 30 100.0 36 .............................. ACTTTCACGGGCTGTACCTTGCCCTGCTAGCGGTTA 2552626 30 100.0 39 .............................. GGTTGAGCGTAGCAGCCTTTCGGCTGGCCCGACTTTCAC 2552557 30 100.0 37 .............................. CAGTGGAAGTCAGAAATGGTTATCTCGTACTATATTT 2552490 30 100.0 38 .............................. CATGGGAGGGGAGAAAAGAGGGCAGGACCCTCAAAAAC 2552422 30 100.0 37 .............................. ACCTCTAATCAAGTGGTATCAGGCAAAACAGGTTATT 2552355 30 100.0 37 .............................. ATAGTTATGCGGAATGGCAAGAAAAAGGGTATGTTGA 2552288 30 100.0 36 .............................. TTTTAAAACTTCATCAGGAAGTAAAAGAGGCCTTCC 2552222 30 100.0 37 .............................. AATTCTTTCTGAAAAGAAAAAACAGCATCCGGGATGC 2552155 30 100.0 37 .............................. ATGAAATATTCTTCCTGCTCTTCTTTCCCGTTTCTTA 2552088 30 100.0 34 .............................. CTTAAAGCGCAGTATCTGAGCTACAAACCAGCAT 2552024 30 100.0 36 .............................. CCTGCAAGCTCTACTTTGTGATATTCACCATCTAAT 2551958 30 100.0 38 .............................. TTTTAACTGCTCTGCAGTAATAAGTGGAACCTTCTCAA 2551890 30 100.0 35 .............................. CTTAAAGCGCAGTATCTGAGCTACAAACCAGCATT 2551825 30 100.0 35 .............................. TCTAATACGAGAAGTGCAAATTCCACAAAAACACC 2551760 30 100.0 35 .............................. ATTTTAAACATTAGCCATCTCCTCCTCATGTATAA 2551695 30 100.0 37 .............................. GTTTGTATTTTATAGTACCTTTTGTTATTTTCCTTAT 2551628 30 100.0 36 .............................. CATCTTGAATTTCTTCTTCAACAGCATCCTCAAATG 2551562 30 100.0 38 .............................. TGGGAGGCAGAAGATAATGTGGATTGAATTTAAACCCA 2551494 30 100.0 36 .............................. CTGATGACCTTGTCAGGGATGAGCAGGGAAGAACCT 2551428 30 100.0 38 .............................. GCTCCCACCAGAGCATTCTCAAGAGAGAACGCTCTAGA 2551360 30 100.0 36 .............................. CACCTTGTCAAGGAGCTGTCCAGCTTTTCCTACAAA 2551294 30 100.0 38 .............................. CTGGTGGGTGGCGATATTTTCCATGATAACCACACTGG 2551226 30 100.0 37 .............................. GACTCATTTCATTAGCACTCCAGTACGGCATATCAGC 2551159 30 100.0 36 .............................. TACTGGCAGTATGACGGCAGTACTGGTAGCCTCTGC 2551093 30 100.0 36 .............................. ACGCAAAGTTGAGGAAATAAGGAAAGGATGGTCAAG 2551027 30 100.0 40 .............................. ACTAAAGTGCAATTTTTCAGACATGTCCCAATTTTCGAAA 2550957 30 100.0 38 .............................. CGGGGTCTGCCCTATACCAGGAATCCTCGAAGGATGAC 2550889 30 100.0 37 .............................. ATCATAACAGGACCCTGTTCAACTATAGCACGCTTGA 2550822 30 100.0 36 .............................. GTTTTTCTATGATTGACGCAAATTCATCGTTTGCTA 2550756 30 96.7 37 ..........................C... ATTTTCGAAAAATTTTTAAGATTTTGAAATTGCGAAT 2550689 30 100.0 38 .............................. TTAGGAAATTCATTGAGCAGTTCAGAACAAAGAGAAGC 2550621 30 100.0 37 .............................. CATATTAAATGATATGACTAAAACAAGTTACTTTATA 2550554 30 100.0 37 .............................. TTTTGTGAATTTGAAATTCACGAGTTAAGGGATTAGC 2550487 30 100.0 38 .............................. TCTATTTTGCCCCCTTCTTTTAGTATTTTTAACATTAT 2550419 30 100.0 37 .............................. TTTTCTTTTCTGTTATATGTGGATTTTCCTATTCCTA 2550352 30 100.0 36 .............................. TCTCAGATAAGCCCACAAGGTGCAGGTTCAGGGCTG 2550286 30 100.0 35 .............................. GCAGGGAGTCAAGACACAACAGTCAATTTCATAGT 2550221 30 100.0 38 .............................. TTATTTCTGTTATAAGCGGTATGCGGTATTCACTTTTG 2550153 30 100.0 36 .............................. TAATATTTTTCTAGTTATCCACAAACTTATCCACAG 2550087 30 100.0 37 .............................. AACAGAGTGCTATCATTTGTTAGAATCAGTTTTACTT 2550020 30 100.0 40 .............................. ATGTGTTGCATAGAACTTTGTCGTAAAGCCTTCGTCATTC 2549950 30 100.0 37 .............................. GCGGTAGCCTGCTACTTCTCACTCCTTTTAATCAATA 2549883 30 100.0 36 .............................. TTTCTAATTTAATAAGTCTTTCTAATTCGTATTTTT 2549817 30 100.0 36 .............................. CACAAAAGTTTTTAAAGGGAGACGGAATTAATCCGC 2549751 30 100.0 38 .............................. GATTTGGAAGAGTTCAAAAAAGACGTTGCAGGAGGAGT 2549683 30 100.0 37 .............................. GGGAATTCGAGGTAGTTATTTTCTGGCCCTATTGCGA 2549616 30 100.0 35 .............................. CATCCAGCAGTTCGGGGTACTCAAACGGTGTCCTA 2549551 30 100.0 38 .............................. TAGTAGCTCTGCGGCTTTCACTCTTTCTTTTGCAGCTA 2549483 30 100.0 36 .............................. ATAAATTCTTTATATGCTATGCATTGCCCATTTTCG 2549417 30 100.0 36 .............................. TCAGCACTGCATAATTCGCTTTTCTCATGCCTCTAT 2549351 30 100.0 39 .............................. TCTATTTTCTTATCTACTTTGTAGATGACTTCGTGACGT 2549282 30 100.0 35 .............................. AGAGGATATAAATCTTACATTAGAGAGGAGGTTGG 2549217 30 100.0 38 .............................. TCCTAAGCTTTTTGACTATTTCCTTAAACCATTCTTCA 2549149 30 100.0 38 .............................. GTGATAAGGGCTGTCGGGATTTGTCGTGGCAAATATTT 2549081 30 100.0 37 .............................. CTTGTAAAATAGTCCTGTGTAAGTTTTCTTGATGAAT 2549014 30 100.0 37 .............................. GTCTAAAATATCTTTTACTGTCAACATTTTTTACTCC 2548947 30 100.0 38 .............................. TGAATTTGATGCTTTTCTGGACTTGCCTGACCGGGCAA 2548879 30 100.0 41 .............................. CATGGTGGAGCCATTATTTTCCAGCAGGGCCACACTGGCAG 2548808 30 100.0 38 .............................. ATTCTTTCTAGTGCTGTATTGTACGCACGTGCAGTACA 2548740 30 100.0 36 .............................. TGTATTAACTAAATGCCCAAACTCATGTGTTAAAAT 2548674 30 100.0 35 .............................. GGAGGCATGTACTTGCGGAGGTCTTGCTCAAGAGA 2548609 30 100.0 37 .............................. TTCCCTGGGGAAATCCTTGTTCATGGGGTTATAGCTC 2548542 30 100.0 38 .............................. CTTATCATGCGGGCGCACGACGGCCCCGACTATGGAAA 2548474 30 100.0 40 .............................. CTTTATGTCTTCTGGTTTTCTGTAAAAGGGTGTTCCTCCA 2548404 30 100.0 37 .............................. TATGTTCGACCCATAGTTTGTTCAACAATAACATTAA 2548337 30 100.0 36 .............................. GGTGTAAAATGGAGGCAGAAAAAGCGAGAAAGGGAG 2548271 30 100.0 38 .............................. AGATTGGCTGTTTCATATCATCTTTAATCTTTGCAAGA 2548203 30 100.0 39 .............................. TGCGCAGGCAAAAAGAATGTTTGCAATAGCGCAAGGTGA 2548134 30 100.0 36 .............................. AGTTCTAACTCTGTTTGCAATATGAGATAAAAGATG 2548068 30 100.0 37 .............................. TACTTTATACCTCCTCTATTTTTAATACTTGATAAGT 2548001 30 100.0 35 .............................. CCTGTACAGGTTTTTCCTGAGCTGACATAAATAGT 2547936 30 100.0 38 .............................. TGTTGCAGCATACTCGATACCTTTGGGCTTAGATACAC 2547868 30 100.0 36 .............................. CTTTTGTCGGAGCTAAAAAGGCTACGCTTTTTAGGG 2547802 30 100.0 36 .............................. TGGGCAATGGTAGGTATGTCATTTTTACCTGCTTTA 2547736 30 100.0 35 .............................. CCTGTACAGGTTTTTCCTGAGCTGACATAAATAGT 2547671 30 100.0 38 .............................. TGTTGCAGCATACTCGATACCTTTGGGCTTAGATACAC 2547603 30 100.0 36 .............................. CTTTTGTCGGAGCTAAAAAGGCTACGCTTTTTAGGG 2547537 30 100.0 36 .............................. TGGGCAATGGTAGGTATGTCATTTTTACCTGCTTTA 2547471 30 100.0 35 .............................. CTATTTTGAATTGCGATTGCTATTGCATTAGCTAA 2547406 30 100.0 37 .............................. TAGAGAGGCCACAAGTTTTGATGTAATAAACTTCGAA 2547339 30 100.0 38 .............................. TGTAGAAGCAATTGTCTTCTACAGGGATATTGAGGGGC 2547271 30 100.0 36 .............................. TCCATTATCTTTTCTCCAGAAAAAGCTGTATCAGAT 2547205 30 100.0 39 .............................. ATTAAGGCATAGCCTTTTTTTTATTCCTTCTTTATAAAG 2547136 30 100.0 36 .............................. TGTTCTTTTAAAATACTAATTATCTTCTCATTTACT 2547070 30 100.0 39 .............................. TGGGAGGAAGAAGAGGATGGCAATTGAGATTATTAAACG 2547001 30 100.0 36 .............................. AAGTCTAATAGGTGGCGTCTCTTTATCTCTTGCAAT 2546935 30 100.0 36 .............................. CCAGCTTGTACAGGTTGTTCTTGCGCTGATGTTAAT 2546869 30 100.0 35 .............................. CGGTAAATTTTCTGCTGCCCATTCTAGTATAGAAG 2546804 30 100.0 37 .............................. CTGTTAGATTGATAGGCGTAAGTGTATCCCATGTTAC 2546737 30 100.0 37 .............................. ATTTGGGCAAATTTATAATTTCTACAATTGTGAATTT 2546670 30 100.0 37 .............................. CTCAGTAAGGCATCTCGATTAGTCCTCGCAAGTTGTT 2546603 30 100.0 38 .............................. GCCCTTTCTTATGGCCTTCACGCAGAAGCCTCCACAAA 2546535 30 100.0 37 .............................. AACCCCAGAACTCCGCTTATACTAGCTCTGTGGGTGA 2546468 30 100.0 38 .............................. AACAGAGTGCTATCATTTGTCAGAACGAGCTTTGCTTC 2546400 30 100.0 35 .............................. TACTTTTTCTTGTATAAGCTTTTAAAGACATTTTC 2546335 30 100.0 36 .............................. GATCTCTCGCACTTGACTTAAATCGTTCGCTCTGAG 2546269 30 100.0 37 .............................. GTTCCAATTCGCCTCTTTTGCCTTTCTTTTTACTATT 2546202 30 100.0 38 .............................. TTGTTGGGAGGCAGGAGCTTGATTTTGAGTGTTACCGT 2546134 30 100.0 40 .............................. TTTTACACCTGCACACACAGTACATCAACCCGCAAAAAAG 2546064 30 100.0 37 .............................. TTTCTGAGACCACCAAGTTTTCTGTCAAGTTCATCAA 2545997 30 100.0 38 .............................. AGCTATGCTTATTCGCAATTGAATTATCCTGACTATGA 2545929 30 100.0 38 .............................. TGCTGTTGCTTGATTTGTCGCTCGAGGATTTTAAGTGC 2545861 30 100.0 36 .............................. AATAGACCTAACCGCGTTCCCAATGCGCCAGTTTCG 2545795 30 100.0 38 .............................. CTAAAATTGCTGCTGTTCTTCTGGGATTGCCCTCTCTA 2545727 30 100.0 36 .............................. GGTGTTGCAGGGTTTACACCTCCAACAGCACCAGTC 2545661 30 100.0 37 .............................. GTCCAGAGCTTTATATTTGAGTTGTTTGAATTTTTTG 2545594 30 100.0 37 .............................. GCTTGGGGAACTGTATTTTAAGCCATTCGGCAGTCTT 2545527 30 100.0 39 .............................. TGGTATAGGCTTTTTCTTTTCCGGTTTCACAGCACTTCC 2545458 30 100.0 37 .............................. AAGAGTTTCCACAATGCTATGGAAGTCCTCTTTTTTC 2545391 30 100.0 37 .............................. GCAGGGATATACTCCCTACTTAAAAGACCCTTGCTCA 2545324 30 100.0 38 .............................. AGCTATTGACAATATGATAACGCATGCGAGTGAGTCTT 2545256 30 100.0 39 .............................. TTGTAAACACCAGTTAAACCAGCTTCTTTCAAGAGAAAA 2545187 30 100.0 36 .............................. TAACTCTGCTCTGAACCTACTGCGTATTGACGCTTC 2545121 30 100.0 36 .............................. TTTTGTCTGTGCGGTTTTGCGAGCGGGGTACCCGAG 2545055 30 100.0 36 .............................. AGGCCGATTGTGCCATGCTGCCCCGACCAGTTTTAT 2544989 30 100.0 37 .............................. CATCGTCTGAGTGAACCACCGTCGGCGAGAGTACCAA 2544922 30 100.0 39 .............................. CTTCATGAATCGGGGATATTCTAACTAACCGCATGTATT 2544853 30 100.0 36 .............................. TCTAACTTTGGGGATGGGCACCTAACTCCTTACATG 2544787 30 100.0 37 .............................. CAGAGAATGTTCCTTATCAAAAACATAGGCAGATTGA 2544720 30 100.0 38 .............................. TAGCAGGAAACTGTTGCCAGTTCCTGCGGGCCTCGCCC 2544652 30 100.0 36 .............................. TCTCTTTCTGTCTTCATTATATACTTGCACACGCAG 2544586 30 100.0 37 .............................. GCTCCTTCTAGAGTTTTCTGCTACTTAGCAGAAAGCT 2544519 30 100.0 39 .............................. GCACACGCAGTGCATCAAGACGCAAAAAACGCGATTACG 2544450 30 100.0 37 .............................. AGAGCAGTGTGGCTGGACTGCCCCGACCAGTTTTATC 2544383 30 100.0 36 .............................. TCTTTAAAGACGGCCTTTTTAAAGCTCAGGTTTTGA 2544317 30 100.0 36 .............................. TGGGGATTGTCAGGGTCTCGGGGGAGCGGGTACCGT 2544251 30 100.0 36 .............................. CCTCCTTCCTTTGTTTATGCAGTCGCTAATACCAGG 2544185 30 100.0 36 .............................. ATTGCTCTATATTTTTTTTAAGCCAGTAGTATCTTG 2544119 30 100.0 39 .............................. CTATCAGGAGCAATGGGCGGAAGCTGGAGCGGTGATTTA 2544050 30 100.0 38 .............................. AAAATTACTAACGCTCTATTTTAACACTTGAAAGTATG 2543982 30 100.0 36 .............................. CAGTAGACACGACAAAAACAGTGTAAAAATAATTTC 2543916 30 100.0 35 .............................. ATTAAGGTAAATTTAGAAATGGACGGACAATTGCG 2543851 30 100.0 37 .............................. TTTAGCTAGACTGACCCGACCAGTTTCATCCAGAAAC 2543784 30 100.0 39 .............................. CGCCGGAACCAGATACTCGTCTATCTGGGGGGACAGCTC 2543715 30 100.0 37 .............................. CGTGGCTAGGGGAATCTATCCTAGTCGTGTGGTTTCA 2543648 30 100.0 36 .............................. AGGTGGGGGATGTCCTCGACCTTGGTGGGGGGTGGA 2543582 30 100.0 38 .............................. GTAGCAGTAGGAGAGCGTAAGTACGAGGTAGTATTGGC 2543514 30 100.0 36 .............................. TTTAGGTGCAGATTTGGTAGGATGTTATGTCAAAAA 2543448 30 100.0 36 .............................. CCTTTTTCTGTAATCCGAAATATTTTGCTATCCCTT 2543382 30 100.0 36 .............................. GCCCGAATGGAGCCGCAATCGCCTGCCCAAAAGCCA 2543316 30 100.0 37 .............................. AGGCAATGGTATGTCTTCGTCTATTACTTCAAAGTCT 2543249 30 100.0 37 .............................. GATAGTGGAGTGGCATTGATATTGGCCGGGATGTTAG 2543182 30 100.0 37 .............................. TCGTAAAAATATAGGGGTTGTCGCAACAGGCTGCCAG 2543115 30 100.0 36 .............................. TTGCACTACACCCCCGGCCCCACCCCTGGCCTTTCG 2543049 30 100.0 37 .............................. ATCTTTCGTGTTGAACTATCGCATACGGCAAGTCATA 2542982 30 100.0 38 .............................. GTAACACAGGACTTTTTAGAACAGATGAAAGCAACAGA 2542914 30 100.0 37 .............................. GTCGAACTTATGCCCACACGTGGCACAACGTGTGGCA 2542847 30 100.0 38 .............................. AGTAATGCTGCTATTGCCATCTCAAGGTCGGCAATACG 2542779 30 100.0 40 .............................. TGTTTCATCACTTATTTGACCTGTCCTTATTTCTTCACCC 2542709 30 100.0 40 .............................. CTCGGTGTCAGCGTAAGTTTGTATGCAAAAATAAAAGCAC 2542639 30 100.0 35 .............................. ACTGCTGCAGCATCTCCAAAACTTGTTTCATCTGC 2542574 30 100.0 38 .............................. TTTTCTATTGCTGAATAAGTTACAAAACTAATACCAAC 2542506 30 100.0 38 .............................. GATTATGAGACACTTATAAAGCTAGCTGATATTTTTAA 2542438 30 100.0 35 .............................. GATCTAATCTCATTCTTATTCTGTTTACTTTTGCT 2542373 30 100.0 39 .............................. ATATTCTGCTAATCTGTGCCACTCTAACTTCAAGCTCTT 2542304 30 100.0 39 .............................. CTCCGACGGCACTCTCGTTAACACCAACCTCCCACGCTA 2542235 30 100.0 36 .............................. TCGACATTACCAAAGCTCTTATTCAGCTCTGCCAGC 2542169 30 100.0 39 .............................. TCCATAATACGTGCGTTAATCATACTATCACCTTTGACA 2542100 30 100.0 36 .............................. CTCCCCACCAATCTCACCAATTTCTAAATTTTTAAA 2542034 30 100.0 38 .............................. GTAGAACCCCATGCATAAGGAGCATAATCCTCCTCATC 2541966 30 100.0 37 .............................. CAGATGTGGAAGAATTCTCCATTACATTCAAAAGCTC 2541899 30 100.0 37 .............................. TTAAAGAATTTGTTAACTGCTTGCTTAACTGTTAAAA 2541832 30 100.0 37 .............................. GTTGTTTAATTCGTCCCTTATCCAATCCATGAGAGGC 2541765 30 100.0 39 .............................. AATCTGTTTTTCTTTATCGACTGGCTTAGCACCTAAGTC 2541696 30 100.0 37 .............................. TTTCTTTTACACTGCGTTGCTCATGATTTCCCCCAGT 2541629 30 100.0 39 .............................. ATCGCCAACAAAATATTGGCGATTACTGGGGGAAATCAT 2541560 30 100.0 39 .............................. TTGGTGGTCCATACATATTCGGGTCTGCGTGCTTGTCCA 2541491 30 100.0 37 .............................. TTAAGCTTGTACGAGTATGACTTGGGTGATTATGATG 2541424 30 100.0 37 .............................. CTTTTGATGAGTATTCCTTTTTCTCTAAGAAGCTCAA 2541357 30 100.0 39 .............................. TCTCTTACCTCTTTTTCTTACGCCACCACGCATTTTATC 2541288 30 100.0 40 .............................. TTAATAAATTCCTCAAATGATTCTTCAGGAATTTCTATGG 2541218 30 100.0 35 .............................. TCTACTCTTATCGGTGCGTGGTTTGCTTTTACGAC 2541153 30 100.0 40 .............................. ATTATACCTCGCCATCACCTCACCACCTTCACAACTCCAC 2541083 30 100.0 36 .............................. AGCCTTAATCCCGGCAAAGAAAAAATGTTAAAGGAG 2541017 30 100.0 38 .............................. ATTTCAATTTTTCTGAAAATTCTCTTCAAAATAATTTT 2540949 30 100.0 35 .............................. CTTCAACTGCTATTTTTTTTGCTATCAGTTCGCCT 2540884 30 100.0 37 .............................. CTAAAAACCGTCCTGAAAAGCGTTTATTTGCGCTTTT 2540817 30 100.0 37 .............................. TTTATTGCCCCATTGCTTACAAGTGTGTAACCAAGTC 2540750 30 100.0 37 .............................. TCCCTAAACACCCCTTTCAAACGCCTATATTTGCCCT 2540683 30 100.0 39 .............................. TCATGAAGCCTGCATCCCAGGCTTCTTGTTTATCACGGA 2540614 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 217 30 100.0 37 GTTTTTAGCCTACCTAAGAGGGATTGAAAC # Left flank : AAATACTCCAAGATCTCTTTCGATAAACTATAAAGAATTCTGAAACTGGTGGGTAATTTCAAATTTTTTGATTTTCTCTTGGAGTTGTTTTTACAAAAACTTTAGGAACTTCATCAGGAATATTTTTCAAAAATGAATTCTATAAGTTTTTCTAAATTCACTATTATCTGCCTATAAATCCTGGTACTTTCCCATAGTTATCTTTAAACAATTCTATTTTTTCATAGGGGCAACTTTGATTTGAATGATTTCTCTATTTTGCTGTGCTTTTTTAAATACTTTATTGATACCAAATTTTATTAAGCGTATTTGAATAACAAAATATTTGTCGTCGATCCCTGATAATGCAAAAATCCCTGGAGATCGACGACAATTTTATTTTTTGTTTTCATCAAGGTAATTGATTTTATCGAATAATGTGATATAATAAAGGCAAGATACTTGACAAAGTCATTATTAGAGACAAAATTTTCATCCGCTTTTTATAGGAATTTGAACGT # Right flank : GTTCTTCAAGCTTCTCTCTTGAAAGAGAAGCTTTCAGACTGTTGACAAAATATCGGGAACCCGTTATTATGAGAAGGGTTCCTTGTTTTTTTAACGGTACAAAGCAAAAGAGGAGAGGAGAAGAAAGATGTTATCAAAGAAAGAGGATGCAAGACATCAAATAGAATTTGTAAGCATAGATCAATTAGTACCACAAGACCACCTTTTAAGAAAGATAGAAAAAGTCATAGACTTTAGCTTCATATACGATTTAGTAAAAGACAAATATTCCGAGGGTCACGGCAGACCAAGCATAGACCCAGTAGTACTCATAAAAATACTTTTCATTCAATATCTTTTTGGCATACCATCGATGAGGAGGACAATAGCAGAAATAAAAACAAATGTAGCGTATAGATGGTTTTTAGGGTATGGGCTGACAGAAGAAATACCTCATTTTTCAACATTTAGTCAGAACTACATAAGAAGATTCAAAGGGACAGACATATTTGAGAAAATAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA //