Array 1 69799-67771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIS01000001.1 Neisseria meningitidis strain P3478 scaffold3.1.4.464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 69798 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 69732 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 69666 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 69600 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 69534 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 69468 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 69390 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 69324 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 69258 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 69192 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 69126 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 69060 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 68994 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 68928 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 68862 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 68796 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 68730 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 68664 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 68598 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 68532 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 68466 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 68400 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 68334 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 68268 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 68202 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 68136 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 68070 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 68004 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 67938 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 67872 36 100.0 30 .................................... ATCAACGCTTCGTCTGCCTGCTCCTTCATG 67806 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 31 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //