Array 1 311254-315067 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJOD01000001.1 Salinisphaera halophila strain KSM-18 Contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 311254 29 100.0 32 ............................. CCGATGCTCAACGTACACTCGAATCCGAGAAG 311315 29 100.0 32 ............................. GCCACGGATCGAATGCCGCCAGCTCGGTACAC 311376 29 100.0 32 ............................. ACTTGGAGTTAGTCAGATGAACCATTACGAAG 311437 29 100.0 32 ............................. ACTACCAAATCTGACGCCCATGAGTCAGGTTA 311498 29 100.0 32 ............................. ACGTTTTACATCACCGAAATGCCAGCCGCTCA 311559 29 96.6 32 ............................A AATTTCAGGAATCTCCTGCCGCGCGGCAAAAC 311620 29 100.0 32 ............................. CCAAGGACAACCAGCTACCGAAGCCGCCCACC 311681 29 100.0 32 ............................. TACAGGCCACCGACGGCCGCCCGGGCCGAGTT 311742 29 100.0 32 ............................. GACGAATTCCCGCTTAACACCCCCGTACTCGT 311803 29 100.0 32 ............................. ATGTGCTGGACGAAGCCCTGGTCGGCGGGCTG 311864 29 100.0 32 ............................. CTCATCAGCAAGCGCGCCGGTATGGCGCAAAA 311925 29 100.0 32 ............................. GGAGCATAGAGCGCGGCGAGAGTCCACTGCTG 311986 29 100.0 32 ............................. CAACTGTGCTTGTGTAGAAGTTTTTGCCCACC 312047 29 100.0 32 ............................. CTTCCACGGGATTGTCTCGTGTCGAATATATG 312108 29 100.0 32 ............................. AATATTTAACAATTGAACACGAGGGATACGCT 312169 29 100.0 32 ............................. AGCGAGAGTTCACCGAATCTGCGCTCGCTGAA 312230 29 100.0 32 ............................. GCATTACAGGTCCCGGCGGTCTGGTCGGCGGT 312291 29 100.0 32 ............................. TTAGAGACACCGTAGGGCTGCGTCATCGTCGG 312352 29 100.0 32 ............................. CCAATGGTGGGAAATTTACTAATGCAGTACTA 312413 29 100.0 32 ............................. GAGGTCCGGGATGCCCGGAGCTAACCGAAGAC 312474 29 100.0 32 ............................. AAAATGCGACTATCATGGTGCATGGTCAATCG 312535 29 100.0 33 ............................. CGTCTCGGCCTGTCGTCTGATCTTATTGTCGCC 312597 29 100.0 32 ............................. TCATCGCATGCGAGCAAGGATCGCATGCGTGG 312658 29 100.0 33 ............................. AATATGACGGCTCGAAATGGTCAAAGCTATCCC 312720 29 100.0 32 ............................. TGAATATAATTTCATCCGAGTCGGCGCCGATC 312781 29 100.0 32 ............................. GCTAGCCTGTATATCGCTTTGCGTCGCCATTA 312842 29 100.0 32 ............................. GTAATCCGTAGCGCGCGGCGTACACGTCGAGC 312903 29 100.0 32 ............................. ACATTTATCGTATTAGATTGGGCGCTTAGCAT 312964 29 100.0 32 ............................. ATCGGGAACTAGCTGAGTCCAACAAGGCGAGC 313025 29 100.0 32 ............................. TCCGATATGTCCGACCAACAGATTGGAAAAGT 313086 29 100.0 32 ............................. CGTCTTAGCGCCGTCGGCAGCGTTTTGAAAGA 313147 29 100.0 32 ............................. GTCGCTGTCTTGTACTGACAGAAGTCCGCCTT 313208 29 100.0 32 ............................. CGAAGTGCTGGCTGTTGGCTGCCCAACCAGCA 313269 29 100.0 32 ............................. ACATTTTCGATGGCTGCTGGTTTTGGTCCGAG 313330 29 100.0 32 ............................. TGGCGTTCCGGCATGAAGCTCTCGCAGCCGGA 313391 29 100.0 32 ............................. TCAAAATCGAAGAAAACTTCGCCTTTCTGAGC 313452 29 96.6 32 .T........................... ACATGAGAGCGGTCATCATCGCCGACGGTCCC 313513 29 100.0 32 ............................. CTAGAGAAGCTCCAGGAGACGGCCAGTAAGCC 313574 29 100.0 32 ............................. ACTGTTGTGACACTAATTTGGTATGTGGCTCA 313635 29 100.0 32 ............................. AGCGTAGTGACCTCGCCCCAGATGCCTGTGGG 313696 29 100.0 32 ............................. GGGAATGATGTTCCCCTAGTGGGTGATGTGAG 313757 29 100.0 32 ............................. CGAGGGATATAGAAAAACCCGCGATCATATAA 313818 29 100.0 32 ............................. AAAAAGAAAAACTTCAAGAAAACGCATCGGCC 313879 29 100.0 32 ............................. TTCAAACAAAAGTGGTTTTAAGGAATTATGTA 313940 29 100.0 32 ............................. CAATAATAATGGTCTTGCTAAGCGCGCTCATG 314001 29 100.0 32 ............................. TGTGACGGGTCCGGACAAAGAAAATGGCGAAC 314062 29 100.0 32 ............................. CTCTACAGGCAATGTCATGAACCTAAAAACGG 314123 29 100.0 32 ............................. GTCAGAATGATCCTGAGGAGACCGCAGAGAAA 314184 29 100.0 32 ............................. GGCGAATGGCAAGGCCATTGGCCAGGCAGATG 314245 29 100.0 32 ............................. CTAAACATCACGCTGCCGCGCCGCGTTATTGA 314306 29 100.0 32 ............................. ACACGGAATTTCGCAATGGCATCAGCGGTTTA 314367 29 100.0 32 ............................. GTCGAATAGGAATGTATTCCTGTTCTATAATT 314428 29 100.0 32 ............................. GCGACCACATCGACGCCAATCGTCAGCGGGCC 314489 29 100.0 32 ............................. ATTGGCTTAAATACAAGCGCGAGGAAAAAGAG 314550 29 100.0 32 ............................. AATCATCGAGCGAATTCATGTATTCCCGCCCG 314611 29 100.0 32 ............................. ACATTTTAGACGGATGCTGGTTTTGGTCCGAG 314672 29 100.0 32 ............................. CCGGCCATTTGTGTGCCCAGCTGCATGGCCAC 314733 29 100.0 32 ............................. TCATAATTTTACCCTATCTTTATTGGTTCGCC 314794 29 100.0 32 ............................. TCTCGTATTTCAGACCGGAAGGCGCCAGCGAT 314855 29 100.0 32 ............................. ATACTATTTCAGCCGATTTCCCCGCCGATATG 314916 29 100.0 32 ............................. ATGCTACCTGCTTCGATGATCTCCGATTCAGA 314977 29 100.0 32 ............................. GAAAGAAAACGATCGCCTCGTTACAGGATACG 315038 29 75.9 0 .....................T.AGTTTT | C [315058] ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.5 32 CCGTTCCCCGCACGAGCGGGGATGAACCG # Left flank : GCCGGCGAGATCGAGCCTCCGCTACCTGCGTCGGAAACCGTTCCGCCAGCCATTTCTGAGCCCGAATCTGTTGGCGACGCTGGTCACAGGAGTAGTTAACATGGCCATGTTAGTTGTCGTTACCGAGGCTGTCCCTCCGCGCCTACGCGGTCGGCTGGCCGTTTGGCTGTTGGAGATCCGCGCAGGGGTCTATGTTGGCGATGTAACCAAGCGTGTACGGGAAATGATCTGGGAGCAGATTACGCAGTTAGCCGACGATGGCAACGTTGCAATGGCATGGGCTAGTCGACACGAGTCTGGTTTTGAGTTTCAAACTCATGGCCCAAACCGACGCGAGCCGATCGATTATGACGGCCTTCGTTTGGTACGTTTTCTAGTATTGGATAATATCGAATCGGGGACCGATCTTTAACAAGCCGTGCTGAAAAACAATAGCTAATTATTTTGGTGGAAAAATTATCTTCTAAATTTGAGTTTAAAAACAATTGTTTATATTTAGA # Right flank : TCTCCTCAGCCAGCGTTGAGAACGATCAGGACTCGGTTGGGGCTAGCTCGTTGATCGCGCTTTCGATGTCGGCCGCGTTTGTCACTGTCGTGTTGGATTGCCAAGTAGCTGGGTCTTCATCGGCGGGTATGTATCCGTAGGCGGCACCGATGGTGTGGAGTTTGGCCGCTCGGCCGGCCTGCATGTCGCGTGCTGAGTCGCCGACATAAATTGATCCAGCAGCACTGGCGCCTAGGTGCGCAAGGCCAAGCTCGATGGGCGCCGGATCGGGCTTGGGGGCATGCGCGCTGTCACCGCCGACGACGCAGCCGGGTGGTGGCTCGAATCCCATCGTCTGCATGAGCGGCACGGCGAGTGCTTCGGCCTTGTTGGTGACTACTCCCCAGTGCCAACCGCGTTCGACAAGCTCGGTAATCAAGGCACGGATGCCGGGATAGGGCGCGGTTTCGCGTGTCAGCCGGGCTTGGTAACGGTCGATGAAAGCGTGGTAAGTGGCCTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCACGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGATCCCCGCACGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 601739-603267 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJOD01000002.1 Salinisphaera halophila strain KSM-18 Contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 601739 28 100.0 32 ............................ TTTCTGGAAATCGTCGGCGAGGCCGGGGCCGG 601799 28 100.0 32 ............................ CATGGCTCAAGCGCACCCCAAAGCGCCCGACT 601859 28 100.0 32 ............................ AACTGAACGCGCCATCGGCTGACGCGGGTGTC 601919 28 100.0 32 ............................ TGCTCATAGGATTGGGGGCCGTAGAAATCCAA 601979 28 100.0 32 ............................ CAGCAGTACGCTGATACAATCACGGTACAAAC 602039 28 100.0 32 ............................ TGAATAGAAAATGCCGTAGTCAAATGGCCGGA 602099 28 100.0 32 ............................ ACAATGGCAAAACCAACGGCCTGATTGCCGAG 602159 28 100.0 32 ............................ AAATCCTCCGGTGTAGAAGTCGCTCATTTCCA 602219 28 100.0 32 ............................ GGGACGGCAGTCGACTTTGACCGGTATGGCGC 602279 28 100.0 32 ............................ TGTTGCGTTGTCAATCACATAGGCATCGACAA 602339 28 100.0 32 ............................ ACGTCGACCCGAAATGGATCGAAAGACACCAT 602399 28 100.0 32 ............................ TGCATATTCTACCCAGACGATATGAAGGGTCG 602459 28 100.0 32 ............................ ATAAGCAATTCGCTTTTGATAAAGGCTCTGTC 602519 28 100.0 32 ............................ GCAATAATTTCGCGACAAAATCAGATGTTCAG 602579 28 100.0 32 ............................ AATAACAGACAAACAACAAACTGATGCTTGGC 602639 28 100.0 32 ............................ AAAATATGAAGCAGGCAGGACGCAAGAGCGCC 602699 28 100.0 32 ............................ ATTTCTGTTTCCTTCGACTGTGATTAGCCCCT 602759 28 96.4 32 .................T.......... ATTATTTCAGATTCAGATAGCTTAAAATCATC 602819 28 100.0 32 ............................ GTATATCGCTGTCGCTGAAATGCTGGACCAGC 602879 28 100.0 32 ............................ TACAGTAGACCATGATGCGATCATCAAAAGCG 602939 28 100.0 32 ............................ GATCGCCCCGTCGACGATGACGAAGCAGTATT 602999 28 100.0 32 ............................ GGCAAATACGACATTGACGAAGATACCGCGGA 603059 28 100.0 32 ............................ GTATTCACCGAACGTCAGATGATCGTCAGGGC 603119 28 100.0 32 ............................ TCAATCGGCGCTTTGACCTGTCGCTCTACGCC 603179 28 96.4 32 ..........................C. GTTGGGCACGACCCGTGCACTGGCACTAGATA 603239 28 71.4 0 ...T......A..T...TC...T..GC. | A [603256] ========== ====== ====== ====== ============================ ================================ ================== 26 28 98.6 32 GTTCGCTGCCGCGCAGGCAGCTAAGAAA # Left flank : AGGGCTTAGACGCCCTGATGAGCGCCACTTGGCTCGGCGGCATGCGTGAATACGCTGCCATAAGCGACATGACACAAGTGCCAGCCGATGCCAAGCATCGCACCGTTTCGCGTCGTCAATTCAAAACCAATGCCGAGCGACTACGCCGCCGCCGGATGCGTCGACATAACGAATCCGAAGCCACTGTGCTCGACCGCATTCCTGATTCCGTCGAACAGCACGTCTCGCTACCTTTTGTTCAAGTCCGAAGTACAAGCACCAGTCAACGATTCAGCCTATTCATCGAGCACGGTTCGCTACAGGACACACCGACAAACGAAGCATTCAACACGTACGGCCTAAGCCGGACGGCCACAATTCCATGGTTTTGACCCTTTTTTGAAAGCACATTTTTTGCCATTTTAAATCAATAACTTAACCGACCCTATTAAACAAGGGTTCAAGCACTCGATGAATAAAATGTTCTTTAACAATCAACCCTTTATACACTTTCAGCTCTA # Right flank : AAAGAAAAAATAATATCAGCGCGTGTAATCGCGAACGTCTTGAAGGATCCACGCATCATCGTCTGGCGCGTTGGCCTGACCTTCGGTGGCATGTAGCACGTTGATCGTGCCCGTACCTTCCATAACAACAGCCTGAACTTCGCGCCGGGCGGTGACATTAGCCTTGCGCAGATGGGTACGAAGATCGTTTTCAGTGACTCGAGCCACACGCATGTTTTCCCATTTAATCTCGCCGCCCGCCTCCATGAGCAGGATCGGTGGGTTATCCGTGGCCTTTGTGAACCCTCGGAATCTATTGCGTAGCCACGATACGCCAAGCTGCAGGCCATAGAGCAACATTAGCGCGAGCATCCCCTGCAAAAGGGCTGGATCCTTGCTAGTAACGACCGTAGCCAGCAGCGACCCCACCGCGATCGTGACCGCGATGTCGAATGTCGACATCTGGGCAAAACTCCGCACACCGGACAGTCGCGCGAACACGATGACCGTGAGATACATCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //