Array 1 719176-719815 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033966.1 Pigmentiphaga sp. H8 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 719176 29 100.0 32 ............................. GTGGCGGTGCTGGTCATGGGCACGCAGGGCCT 719237 29 100.0 32 ............................. CCCACCTGTTGGCCGAGATGGGCGCCAGCACT 719298 29 100.0 33 ............................. TCACCGGCGCCAACGGCGTGCGCGCCACGCGCC 719360 29 100.0 32 ............................. CTGATACTTGGTTAAAGCGCGTTACTGCTGCG 719421 29 100.0 32 ............................. CACAGCCCCGCCATCGCCACGCCGGCAGCAGC 719482 29 100.0 32 ............................. TTGTTCTGCCGCTGGGCCTGGCTACGAGGCAT 719543 29 100.0 32 ............................. CGCGCCAGCAACCGCGAGCGCTCCGCCGCGAT 719604 29 96.6 32 ............A................ ATCGTGGCCAAATCCATCACGTCGGCGCAGAT 719665 29 96.6 32 ............A................ ATTGTGTTGTCCGTGGCCCTAACTGGTCAGTA 719726 29 93.1 32 ............A............C... ACCTATCAGACCGGGGCCGAGCAACTGGCCAA 719787 29 82.8 0 .....T.....A..........C...T.A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGGGAGCGGGGATGAACCG # Left flank : TCGCCCAACACCAGCCCGCCACCATCGACGACGTGCGCCGCGCGCCGCCCCTGGCCGGCTTCAGCCCCGCAGTGAAGGCCGAGGCCGACGAACTCAAGGTGTTCCTGCGCGACAACCTGTATCGCCATTACCGCGTGCTGCGCATGACCACCAAGGCCAAGCGCGTGCTGCGCGACCTGTTCATCGCCTTCCTGGAAGACCCGCGCCTGCTGCCGCCGCAGTACCAGGCACGGGCCAATGTGGATCAGCCGCGGGCCATTGCCGACTACATCGCGGGGATGACCGACCGGTACGCGATCAAGGAGCATCGGCGGTTGTTTCTGGTAAGCGACGAGTAGGGGGCTGGAAGGGGCGTTGCTGGCGTCGATGTGGTTGGAGGCCGCTTGACCGTGTGAAGTGGGGCGTCGTTCTTGTTTTTCGGCGGGTGATCGGCTCTTTAAAAAGTTGGTGGATTTTTGCTGGGTGGTTTTTTCTTTTGAAAACAAGCGGTTATGTTTGGA # Right flank : ATGTTTCGCGCTCACGCACGAGCCCGGCGCGCTACCTGCTGCGCGATCCCCTGAGTCGTGGATTTTATATAGGTTTTCCTATAAAATAACCTATATTCGATAAGGCACAGATGTACACCATCAACTGGATGAAGAAGGCTCGCAAGCAGTTGGCAACGGTCGGTACGCAGAAGGCCCGCGAAGCGATTGTTGATGCCGTGTCCACGTTGGTGGATTTGCCCAACGCCCAGAATGTGAAAGCCCTCACGAAGCACCAGTACGGTTACCGCCTGCGCGTCGGTAAGTATCGAGTGCTATTCGACGCGGATCATGAAATCCGAATCGTCGAAGTGCAGGAGGTGAAGAAGCGCGACGACCAGACGTACTGACACCCCATCCGGGCAATAGCCCGGCGGAGAACGCGATGAGCACGAACCACACCATCATCAACACTAGCGACGGCCGGCCGGCCTTCGTTGTGCTTCCCTACGACGAATACATTGCGCTGACTGGCAATAAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGAGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCGAGAGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGGGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 783713-784107 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033966.1 Pigmentiphaga sp. H8 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 783713 29 100.0 32 ............................. GGATGTACGTTGATACATTCGGCATCCCTCGC 783774 29 100.0 32 ............................. GTCGAAGTGCTCAACGACATCAACGGCGATCT 783835 29 93.1 32 .T..........A................ TCTGGCCGAAAATCTCGAAGGTCAAGCAGGAC 783896 29 89.7 32 ........G...A.........C...... CGACAGTGGCGCGCGAGACCATCCATACCGAG 783957 29 93.1 32 ........T...A................ TTTGCGGCGATCGACTCAGGCGCGCGGATCTC 784018 29 96.6 32 ............C................ CACATCCATAGTCTGATGCAGACGTACCGGCC 784079 29 86.2 0 .T..........TA...........G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.1 32 GGGTTCCCCGCGGGAGCGGGGATGAACCG # Left flank : TCGCGCGAGGTCGGGGCGCCCGGGTAGCCCAGGTCCGCTTCGTACTCGATGGGCTCGATATGAGCGTTGAGCTGCGCACGCGCACTCTGCAGCAGCGCCGCGCACGCATCGGCATCGAGGAAATTGCGCACCACCACCAGACCATCCCGGCGCAGTGCCGCGATCTGTTCGTCGCGTGACAGGCTAGCCATGCTGCTCTAACACAAGAGAAGAAAAATCAGCTGACTAGGATACGCTGAATTTCTCCGAAAAACGCTTGCGCCTTTGTCCGTCAGCTGGATCTGGGGGGCTGGATTTTCGCGGGCTGGCGGTCCAGCGTGGGCGTGAAGGGAGAGCGAGTGCCGATCGGCGCGCGTGAATTGGATAGAAGCGGGGCGGGTTGAGTATGATGGTTTGGCGATGACAGCGGTTGTTCTGTTGGGCGGCGTGGCTTGTTGAAAAAAAACGGTGGATTTTGTGGGGGCGGTTTTTTCTTTTTAAAACAAGTGCTTATGGTTGGA # Right flank : GATCCATATGGCGAGGGTCTTGTCCGTGGCCCTTTCTGTGCGTGAGTCATAAGCCACTGCCACCCGTCATAGACGGACACTCGCACAAGGACTATAGTATTCATTGGTATTACCTTCGAATATACATTCCATCATGGCTACGACCATCAAGCTCAATGACGACTTGAAAGCTCGCATACATCGCCTTGCAGATCAGCGGGACCGTTCGGCCCACTGGATCATGCGCGAAGCAATCACGCAATACGTGGAGCGCGAAGAAAAGCGCGAGGCGTTCAAGCAGGATGCGATGCGTGCATGGAATGACTATCAGGCCAACGGATTGCACGTGACGCTTGAAGAAGCGGATGCCTGGCTGGCGAAGCTCGAAGCGGGCGAGGATGCGGAGCCACCTAAGTGCCACGAGTGATATGGACGCCACTGGCACTGGACGATGTGCAGAACCTCTATCGCTTTCTCGCGCAGAAGGATATAAGCGCCGCGCGACGTGCCGTACAAGCAAT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGGGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGGGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 794346-795659 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033966.1 Pigmentiphaga sp. H8 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 794346 29 100.0 32 ............................. TCCTCGACCGAGCGCGAAGTGGCGCTCAACGA 794407 29 100.0 32 ............................. CCAGCGGCATCGAAGTTGGACGCGTGGATGTT 794468 29 100.0 32 ............................. CCAACCCCCTCGAGCTTTAGGCGGTCCGCTTC 794529 29 100.0 32 ............................. CTCAGCCCGTTGATGCCGCCGGGAACAATGCG 794590 29 100.0 33 ............................. CTTGCGGCGGCGTTCGTCACCTGGGCGAACGCC 794652 29 100.0 32 ............................. CGGTCCTCGCGCGGCTGTCCGGCCCGGCCCGC 794713 29 100.0 32 ............................. CGGTTGAAGAACATCGCGCAGAACGCGGACGA 794774 29 100.0 32 ............................. GTCGCCCATTCGCGTCGTATTCGAACTGCGGT 794835 29 100.0 32 ............................. TCCTGGCAAGCCACCGACTTCCCCATCGTCAC 794896 29 100.0 32 ............................. TATCGACGGCGCGCAACCTCCCTGTCGGGATA 794957 29 100.0 32 ............................. TGTCGGCGGCGCGCAACCTCCCGTCGGGATAG 795018 29 100.0 32 ............................. ACGGAGGGAGAGCATGGCGACCGGTAGCTCGA 795079 29 100.0 33 ............................. GCGTCTTGGACGTGGTAGCGCTTGCGGGCGACC 795141 29 100.0 32 ............................. TCGGACAGCTCTTGCCGGTAGAGCGCGTACAC 795202 29 100.0 32 ............................. ATCCAGTCGCCGCAGGCCTCCGCTATCGTGGG 795263 29 100.0 32 ............................. TCGAAATCTTCCTGGAAGCTGTCGCCGACTCC 795324 29 100.0 32 ............................. GCCGGGGCATAGACCAGATCGAACTGGCCAAA 795385 29 100.0 32 ............................. AGGTGGGCGCGATACATAAGTGTCGGCGGCGC 795446 29 100.0 32 ............................. CTGGCCCTGCTAGTAGGAGGCGGCACCGCAGC 795507 29 100.0 32 ............................. GTATCTATCATGAGCGCACGTAAGACCAAAGT 795568 29 96.6 32 ............A................ CGGACGAGGTGTCCGTCTACACGCTGAACGAT 795629 28 82.8 0 .....-......A...G.....G.T.... | T,T,T [795645,795654,795658] ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.1 32 GTGTTCCCCGCGGGAGCGGGGATGAACCG # Left flank : TCGGACGGATCATTCCGCTGATCGAAGATGTGCTCGCGGCCGGGGGCATCCTGCCACCCGAGGCTCCTCCTGAATCCGTCCCTCCAGCCATTCCGAATCCGGAAAGCGATGGCGACGTCGGGCATCGGAGCCGCTGATGAGCTTTCTCGTGGTCGTCACCGAGAACGTCCCGCCAAGATTGCGCGGGAGATTGGCCATCTGGTTGCTCGAGGTCCGAGCCGGTGTCTATATCGGTGACGTCTCGCGGCGAACGCGGGAGATGATCTGGCAGCAGCTCGACGCGGGGCATGAAGACGGCAACGTCGTGATGGCCTGGGCCAGCAACAGCGAGTCCGGTTATGACTTCCAGACGCTTGGGGCGAACCGCCGGGAACCGATCGACTACGATGGGTTGAGGCTGGTTGCGTTTCTTCCGCCAGAAGGGTCGGCTCTTTAACAAAAAAATTGGTAGATTTTCGGCGTCCGATTTTTTCCTTTGAAAACAATCGGTTATGTTTGGT # Right flank : GGGTGAATGCCTGATCTTGGGCAAGGGTGCAATTCTTGCAGTAGCCAATTCACCTGTAAAAATGCCTTGAATTAAATGCCCATATTGGGTAACTTCGTTCCCAATATAGGTATGTTTTGCTTCACCATGCACTCTAACTTGGCCGATGCCCTATTTCCTCGAACCAAACAGCGCGTGTTGGGATTGTTGTTCGGCCAGCCTTGGCGCAGTTTCTATGCCAGCGAGGTGATGGGAATCGTGGCCAGTGGCTCCGGCGCGGTTCAGCGTGAGTTGGCGGCCTTGGCTCAGAGCGGTCTGGTCACCGTCAAGGCTGTTGGCAATCAAAAGCACTATCAGGCCAACCCAGACTCCCCGATTTTTGAGGAGCTGTGTGCGATCGTGCAGAAGACGATAGGATTGGCAGAACCTCTGCGCAGTGCCCTTCGGCCTCTGGAGCGTCGAATCACCGCGGCGTTTGTCTACGGTTCTGTTGCGAAGAAAATGGACACGTCGCGAAGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGGGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 796932-798119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033966.1 Pigmentiphaga sp. H8 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 796932 29 100.0 32 ............................. CCGTCCGAGAAGGGCACGGTGGGCGCCACCAT 796993 29 100.0 32 ............................. CTCCAGGACATCAGCCAGGACGATGCTGTGGC 797054 29 100.0 32 ............................. GTATCCCCGTTGATGCGCTTCTCGGCTTCGGC 797115 29 100.0 32 ............................. GCGGCGGTGATGGTGTCGTTCATAAACACTCC 797176 29 100.0 32 ............................. CCCGCTTCGTGGGCCTTGGCCAGGAACTCCTT 797237 29 100.0 32 ............................. CTCACGACCTCCTGAAAAACCCTAAGATCCAG 797298 29 100.0 32 ............................. GACTCGAAGGGCAACGTCGTCACGTTCAGCCA 797359 29 100.0 32 ............................. TGATCTACGACGCGAATCTGCGCAGCAGCTAT 797420 29 100.0 32 ............................. GTATCGGCGTAGGTCATGGGATTTGAGTGGAT 797481 29 100.0 32 ............................. CCCTTGGCGGCGCAGCGGACCATGAACGCCTT 797542 29 100.0 32 ............................. CCAAGGCCGGAGACGCGGGCAAACAGGACGAT 797603 29 100.0 32 ............................. GGGTTGTCCTGGGTCATTGGTCGCTCCATCGT 797664 29 100.0 32 ............................. CCAAGAAGGCCCCGCAGCCGCCCGCATTTGAC 797725 29 100.0 32 ............................. TATTGCTGGTATCGCGCAGACGGCACAACGCG 797786 29 96.6 32 ............A................ CTCGTCCACGTCGTCGACTGCGTCCTCGTCCA 797847 29 96.6 32 ............A................ GCCGGATCGTCGTAGGGGGGGCCGGTGCGGAT 797908 29 96.6 32 ............A................ TACCCGATGGAGCAACAGTTCACCGTGCCGGA 797969 29 96.6 32 ............A................ TAGGACTCGTCCAGGCCATCGCCTGCCGGCTT 798030 29 96.6 32 ............A................ TCGGGGTCGGCCGCGATCCTGGCCAGGCGCAG 798091 29 89.7 0 ............AA............A.. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.6 32 GTGTTCCCCGCGGGAGCGGGGATGAACCG # Left flank : TCGACGGCTTGAAGAGGTCAGGTCATGCGAGGCTGAAGGACGCACTCAATTCGTCCCTGTCCATCGAGAGCCGTTTCGATCTGGCCTACAACGCCGCCCACGCTCTTTGCCTGGCTGCGCTGCGATGGAACGGGTATCGGTCAACAAATCGCTATCTGGTTTTCCAATTGCTACCCCACACATTGGGTCTCGGACCGGCGGTCTGGCGAGTGCTCTCGAAGTGTCACGATATCCGCAATCTCGGTGAGTATGAAGGAGATCTGAGTGTCGATGATCGGATCGTCACAGACCTTGTGGCGGCGTGCCAAGTAGTGGCTGACAAGGTCGATGGCCTTGCTCCGCTAAGTTCTGTCCGCTGAGAAATAAGCTGCAATGTCTGGTTGTCATGACGAGTTGAAGCCTGTTTTTTCGGCTTTTTAACGAGTTGGGTTTCCTGGAAAAAAGTTGGTGGATTCTTGGCGTCCGATTTTCTCTTTTGAAAACAATCGGTTATGTTTGGT # Right flank : GCCCGACAGCGGGCGCTTGTCCGCCTCGGCGACTGGAAGCTCCTCTTACTCCACCGTGATCTTGTTCGCCGTCGCCAGCTCCTTCCAGCGGCGGGTCTCCCCCTGGATGAACGTGGCGAACTCGGCCGGCGTGCTGCCCACGGTGTCCAGCCCGAGCTTGTTCAGCTTGGCGCGCGTATCGGGATCCGACACGGCCGCCTTGATCTCCCTGGCCAGGCGGTCGACCACCGCCGCCGGCGTGCCCTTGGGCACGAAGAAGCCGTTCCATTCCAGCACTTCGAAGTTCTTGAAGCCGTTTTCCGCGATGGTGGGCGTGTCGGGCAGCGCGGCCATGCGCTTGGCGGAGGTGACGGCCAGCGCCTTGAGGCGGCCGGACTGGACGTAGGACAGGCCCGACGCGGCGTTGGCGAAGTAGGCGTTCACCTGTCCGCCCATGACGTCCGCCAGGGCCGGGGCGCCGCCCTTGTAGGGTACGTGCAGCATGTCGATGCCGGCCTGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGAGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCGAGAGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGGGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //