Array 1 38292-37794 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAYY01000003.1 Neisseria sp. KH1003-02 NODE_12_length_57106_cov_9.78999_ID_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 38291 36 100.0 30 .................................... GTAATGGCAGAGAGTAAGGGTAAGGTCATG 38225 36 100.0 30 .................................... ATCGGTGCGCGGGTCGAGCATATATTTTTC 38159 36 100.0 30 .................................... GCTGCAAGCGCAGAAACAACCGCCTGCTGA 38093 36 100.0 30 .................................... GCATGGACTTTAAATAAGAGTCAATGCGAA 38027 36 100.0 30 .................................... GTAATGAGTTTGTTAATGATACTTCAGTAA 37961 36 100.0 30 .................................... AATAGGCTCAGTCGGAATAGTCAAGTCGGG 37895 36 100.0 30 .................................... TAGCGTTTTAGTGTTGGCTAGCGTCAAGGG 37829 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGCGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACTATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAACCCTTGATTACTTTGGGTAAAAAACCATCTTTGGCAAACCGTCGTTTGGCTTTTAACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGTGACAATGCCCCTTTGGCATTGGTTGAATTAGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTGATATGAAAGCACTGCCTTTTTAGGTAGTGCTTTTTTCATTTAGGAAGTCTCTATTTTATTTTGCAACGCTACAATTTTATTGTTTCATTCAATGCGGTGGATATA # Right flank : ACCTCAACGGGAAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGACTAAAAAAGTGGCTTTAAAATAATAATAGTTGGTCTGAATTGACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCAAATTGCTTTTCCGTTACTTCCAAACAGCGGATTGAACCTTCTTGAGGTAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGGAACTGGCGGAATTGATTGGCGGCTTTCCGCTTGGCCGCTGTGGTAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTAGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTCCAGCTGTTTGGCGTTTTTGTTAGTTACGCTGGCTTGAAATGAAGAAATCATTTTGTCGATGGCAGCCAAGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 265204-258417 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAYY01000011.1 Neisseria sp. KH1003-02 NODE_1_length_267518_cov_11.0748_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 265203 33 93.9 39 CT............................... TTCAGAAGCACCATGTGATATGATTTGATTTAATCGTTC 265131 33 93.9 32 GT............................... AATATCAAGCAAAACATTACCAAATGCTTCTT 265066 33 93.9 36 GT............................... GCCATTAGTCTGAAAGCATTGCAACCCTACACGCGC 264997 33 97.0 31 .C............................... GCCCCATAAATTGAAGCTCAAACCTACACCA 264933 33 97.0 32 .T............................... GATATTGCTGATGCTATTGCCGATGGTGGGCG 264868 33 97.0 35 C................................ TCCAGCCAAAGCGGTTTGTCCATGAAATCATTGAC 264800 33 93.9 33 TG............................... AGCAATACGCGCCTTCAGAAACTCGACAGGATT 264734 33 97.0 34 C................................ AGCATCAAAATGGCGTAAGCGGACGGGGGAATAC 264667 33 93.9 32 CG............................... AATTTAGACATTACTTTTTTCCTATAAAAAAA 264602 33 93.9 32 GC............................... CTTACGCGTGTAAGCCTTGCAAGTAGACAGTT 264537 33 93.9 37 TT............................... AATTCGTTCTTCCAAGTTTTCAGGCGAAGCGGCGAAA 264467 33 93.9 31 GC............................... AATTCGGCGGTTTTGGTACGCACGTTTTCCA 264403 33 93.9 31 GC............................... AATTCGGCGGTTTTGGTACGCACGTTTTCCA 264339 33 93.9 33 GC............................... TCCATATTTATTTTAAATAACGCATTCTAAAAC 264273 33 100.0 32 ................................. TTGCACAAACTCGAAGGCTTGGATAAACAAAG 264208 33 93.9 32 CC............................... CAGTGCGGCGACTTGACAGCACGGCTTCGCGC 264143 33 100.0 32 ................................. CAAATTTGAGCAATACGGCGGCTCAGGGTCAG 264078 33 93.9 31 TC............................... GTATTTTGGACTTTTATCACCGGCTTGATGT 264014 33 93.9 38 TT............................... TTTTGCCCTGCCTAATCAACTCATCCCGACGGCTCATC 263943 33 97.0 31 .G............................... TTTTGTCCCGATAACCCGATACAGGCGCGGT 263879 33 93.9 33 TT............................... GGTGACATCCAACCCGGCCTTAATCGTATTTTC 263813 33 97.0 34 .G............................... AACGTTAGATGCTACTTGGTTTGCGCAAAGAAAA 263746 33 100.0 31 ................................. GATTCTTGCCGTTGCCGTTGTATCGCTCGAC 263682 33 97.0 33 .T............................... GCTTGATGACGTGGCGACACTCATCAAAGCAAA 263616 33 97.0 32 .C............................... CACTACCGCCGCCGCTGCCACTGCCGATACAA 263551 33 93.9 32 CC............................... TTTTTCCGGCAATCACTGTTTCAACCGCTGGC 263486 33 100.0 31 ................................. AGCAGCTTGGAAACCATGCTTTGCCAGTTAT 263422 33 93.9 32 TC............................... GGCGCGATGATTGCCCACGTCTGCGCCTCAAC 263357 33 93.9 33 TG............................... CCCAATTTTGAAAAATGGCGCGGCCATTGACGG 263291 33 97.0 31 .T............................... AAACACGTTACAAATCGCCGCCGAGCCAAGT 263227 33 97.0 32 T................................ CATCGCTTCCTTTCCTAATCGACAGGGCTGCC 263162 33 93.9 34 GC............................... TGCGACCTCCACGCCTGCGCCTGCTAAAGCCAGC 263095 33 100.0 32 ................................. CTTTGTTTATACAGATTATCTTGAGGGGCAAT 263030 33 93.9 32 CT............................... TTGCAATGCGTCATAGGCAATTTGATAACGGC 262965 33 97.0 31 G................................ GGCTGGTTGTGTTGTCTGACGATGTGTGTAT 262901 33 97.0 32 .T............................... CCTGTCATTATCCTTACATTCGTGCATAATTT 262836 33 93.9 31 CC............................... TTTGTCTGCTGACCCATCATTACCGGTTTTG 262772 33 93.9 32 GT............................... CATTCATTTCACACCTCAACTAACTCAGGCCA 262707 33 100.0 33 ................................. TCAATATACCCGTAAATTTGAGCCTGAAAAACA 262641 33 93.9 32 GG............................... TCTGCTGCCAGCCCGGTTGCAATCTGCACAAT 262576 33 93.9 33 CG............................... GCCTGAAAACTTGGAAGAATCGATACCAAGCTC 262510 33 100.0 32 ................................. TGCGCCTGTACCTTTTGACACACGCGCACCGG 262445 33 97.0 31 C................................ GTTGGCGGCGAGAACCAATACGGCGTCGTCG 262381 33 93.9 31 TT............................... CCGTAAAATCGACCCTTACCAACTGGAGCAG 262317 33 93.9 32 GG............................... TCTTGACGACGTGGCAACACTCGTTAAGGCAG 262252 33 97.0 31 C................................ TTTCTATTACGAAATGCAACGGAAAGGATTT 262188 33 93.9 33 GC............................... AAGATTTTGTGATAACTGCCTAGTTTTTGTGAT 262122 33 100.0 33 ................................. TGCTCTGTCTATGGCTGACGGTATCGGTGATGT 262056 33 100.0 32 ................................. AGCAATCATCTCAAGGCTTGACCCTGCCTGTT 261991 33 93.9 31 GT............................... AATGAGTTACTCATTTTCCAATCTCCAAAGA 261927 33 100.0 33 ................................. AACAAAATCTCTTCTTCGGCGCGGAAAGTGTAC 261861 33 97.0 33 G................................ ATCAATTTCTTGGATTTGTTTATTTATTATCTT 261795 33 97.0 32 T................................ ATCGCCGCCTTTTGCAAGATTCAGGCGTAATT 261730 33 93.9 33 GT............................... TGAACGAAGCAATCAAACGCGCCTACATCGGCG 261664 33 97.0 32 .C............................... TTTGATTCTCAGTGATTTCATGCGTCATTTTT 261599 33 93.9 35 CC............................... AGTGATTTGCATTTTTTACTGCTCCATTAAAAAAG 261531 33 93.9 33 GC............................... ATCGCCCTGCAACACACCGCTACCCAAAGCCTG 261465 33 93.9 32 CG............................... AATGCGCGGCTTGTGGAAACGTACAGATTCGC 261400 33 93.9 33 CG............................... TGGTTGACGGTTTCGCGCAATGATGTGATACCG 261334 33 93.9 32 CT............................... CCGAAATTCGGGCTTGCCGACGCAAGGCAATG 261269 33 93.9 31 GC............................... ATCGCCCTGCAATACACCGCTGCCCAAAGCC 261205 33 93.9 32 TG............................... AGCAACTGAACAGCGAGCTTGAGCAAACAGAC 261140 33 93.9 31 GG............................... ATACATACGGGTACGCAGCGGCCATTCGATT 261076 33 93.9 33 TG............................... AACGATTTCAGTCTCGCCGTCCGAGAAAGACCA 261010 33 93.9 34 TG............................... CATCACATCACGGCCAAATAATTCCAACGCTTCG 260943 33 93.9 38 CG............................... GAATTTTAAATAGACAAAAAACGGCTACTAAAAGTTTA 260872 33 93.9 31 CT............................... GAATTTACGCCTTACATCATCTTGGGCATAC 260808 33 93.9 32 GG............................... TTCTTCGGGGATGAGCAGCTCTGCAATGACTT 260743 33 93.9 31 GC............................... GCCCGCAAATGTCATCAATACACTAGTTAAT 260679 33 100.0 32 ................................. GTCGAAGGAACGGGAAAACCTGAATATAATGA 260614 33 100.0 32 ................................. CTGAATAAAGGTCTGCCCCATACTTTTGAAAA 260549 33 93.9 32 .G................A.............. TAATATCCTCAAGGATATTTAAAATAGTTTTA 260484 33 93.9 32 TG............................... TCCTCAATTTTATGAAGAGTAACCCTTAAGCC 260419 33 93.9 32 TT............................... TCAAATAACTGGCAAAGCATGGTTTCCAAACT 260354 33 93.9 33 GC............................... TATTGAATGGTTGAAGACAGGCGAAGGGTCGCC 260288 33 93.9 31 GG............................... GAGATTATTGGGCGTGTAGCCTAATTCAAAT 260224 33 93.9 34 TG............................... TACTACAACTCCTTCAATAATATTCTGCGCGTGG 260157 33 97.0 32 .C............................... CAATTCGTAGCCCCACTCGTACTGCGGATCGT 260092 33 97.0 32 .G............................... CAGTCAAGCTCCCACTCGACGCGACGCTCACG 260027 33 97.0 32 C................................ CGCGATTGAGTGGATGGTAAACAAAGCGGTCG 259962 33 93.9 33 GC............................... AGCATTAGTGTTGCGGTCATATTGGGATTGACG 259896 33 93.9 32 GC............................... AAGCAAGAAGGCTGGGACGGTTTCAGTAAATC 259831 33 97.0 33 C................................ CACAATCGAATCATCCTTATATTTAAATGCCTT 259765 33 97.0 34 T................................ CAAGAAACACGCTTTTGGCTGGTGGGCAGGAAAG 259698 33 93.9 32 GT............................... CAAAAAGTTCAAGAAACACGCTTGTGGTAGGG 259633 33 97.0 33 G................................ AAGTTCTTATAGGTCTAGGGGTTTCTCTTGTTT 259567 33 93.9 31 CC............................... GAATATATTTTTGGGTTCGGGGTGTCGTCCC 259503 33 93.9 34 CT............................... AAAATATCGCCTGTCCCCTGACACAATCTACGTC 259436 33 100.0 34 ................................. TGGTTCTACGAACAAACAAGACGGCCAATCATCA 259369 33 97.0 32 .G............................... AGATCAGACTCTTTTTTATTTCTGCTTAACCT 259304 33 100.0 33 ................................. ATTTTTGCTTCAGTTGACTGCTTCGATAACTGG 259238 33 93.9 34 TC............................... GCCGTTTACGCCGACACGGTTTTTCTGCGTATCA 259171 33 97.0 32 .C............................... ATGACTTTAATATAAATGAAACACTTTATATG 259106 33 97.0 32 C................................ ATGACTTTAATATAAATGAAACACTTTATATG 259041 33 97.0 31 C................................ ACAGTATCATGACCAGCACATAGTACAATTT 258977 33 90.9 32 TC....................T.......... CGCATTAGTGCAACGATGATTATCATCTTAGG 258912 33 90.9 33 CC....................T.......... ACGTAATCCTTGCACATGGCTTTAGTAACTTCT 258846 33 87.9 36 TC....T...............T.......... AAACTGTAGAGAAGTATGGCCGAGGCAATTGTATTC 258777 33 90.9 32 CC....................T.......... AAAGGAGCTGATTCAAAATCGGTCTTAGCTGC 258712 33 90.9 32 TC....................T.......... TCCTGCGTGGAAATCGAATGGGAAAACCTTGG 258647 33 90.9 34 GC....................T.......... GATAGAGGACAGCAAGACAGGTCGCCTCGCCTAC 258580 33 90.9 33 CC....................T.......... GCGCTTGTACAGATTATCCCTGCCGACTAGTTT 258514 33 90.9 32 CC....................T.......... AATATCGATCTCGGCTTCAAAAGGTAAGGGGA 258449 33 84.8 0 TC.....A.....A........T.......... | ========== ====== ====== ====== ================================= ======================================= ================== 104 33 95.2 33 AACAGCCGCCTTCGGGCGGCTGAGTGTTGAAAC # Left flank : CTGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGGCAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGTGTGCAGTATTCGGTGTTCGAATGCGACATTGCGCCCGATCAGTGGGTTGTTTTAAAAAACAAACTCTTGAAAACCTACAACCCGGAAACCGACAGTCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTCAAGGATACATTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGACAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGG # Right flank : TCTGCCACTGTATCTTATGTCTGAGTAGGGAAGAGGGGCTGTATGTTCAAATATCGTCCAAACAGGCCACTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCAGTGGAGGATATTAGAAGCAAGTTATAAAGGTTAATCAATAACAATGCTGTCTGAAAAAGATTCGGACGGCATTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGCATCTATATCAATTTGAATTTTTTAGAATTTCAATATGAACCCCCTAATTTACTTCGCCCATTCTGCCCAAGACGAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTGCAAAGCCTTCGGCCAATGTTGGGGAAATGGCGGCGGAGTTTGCTCGGATATTTGGTGTACAGAAAAAAATTGCCTGCCAGACGGGATAGCTGCATGACTTAGGGAAATATTCGGAACCCTTTAATCAGCGATTGCATGGAGGCCCTCAGTCGATCATGC # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACAGCCGCCTTCGGGCGGCTGAGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //