Array 1 164778-163162 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODG01000037.1 Salmonella enterica subsp. enterica serovar Newport strain R8_2873_R1 NODE_2_length_414471_cov_0.645941_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164777 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 164716 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 164655 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 164594 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 164533 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 164472 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 164411 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 164350 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 164289 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 164228 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 164167 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 164106 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 164045 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 163984 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 163923 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 163862 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 163801 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 163740 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 163679 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 163618 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 163557 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 163496 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 163435 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 163374 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 163313 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 163252 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 163191 29 100.0 0 ............................. | A [163164] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182633-181447 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODG01000037.1 Salmonella enterica subsp. enterica serovar Newport strain R8_2873_R1 NODE_2_length_414471_cov_0.645941_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182632 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 182571 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 182510 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 182449 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 182388 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 182327 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 182266 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 182205 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 182144 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 182083 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 182022 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 181961 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 181900 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 181839 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 181778 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 181717 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 181656 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 181595 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 181534 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 181474 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //