Array 1 2182829-2183283 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056883.1 Klebsiella pneumoniae strain RHBSTW-00062 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2182829 28 100.0 33 ............................ CGATTTACCTCTTCCACCCGCTTGGCGGGAAAA 2182890 28 100.0 33 ............................ TGGTCATCGCGCCCCTTGGCCTGCTCTGCGCTG 2182951 28 100.0 33 ............................ TGCGCGATATCCGCGCCGCGTTAGCGATGTGGT 2183012 28 100.0 33 ............................ TTGTCTGGGACAGCAAAGGACGCCGTAACGAGG 2183073 28 100.0 33 ............................ TCCTTCATTAAGTGAGCAATTGCTTCCTTTTTT 2183134 28 100.0 33 ............................ CCTGCAGCTGGTCGTCGAGCTGACGGATGCCGG 2183195 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 2183256 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGCGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2192037-2193223 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056883.1 Klebsiella pneumoniae strain RHBSTW-00062 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2192037 28 100.0 33 ............................ TACGTCGAAAACGAGCGTAAAACAGGTTTCATC 2192098 28 100.0 33 ............................ TAGATGGATTCCTGGGTATCCCCCCAAAACAAA 2192159 28 100.0 33 ............................ CTTTCTCGACGGACGATCCCGTTTACCTCGTTG 2192220 28 100.0 33 ............................ TGACGCTATTTTTTGCCAGGACAACGGCTATGA 2192281 28 100.0 33 ............................ TTACGTGATCGATAGCGGGCTGTCATATAGCGA 2192342 28 100.0 33 ............................ TCTTTATGTCCGCTTGCGAGGCGATCAGGGTCA 2192403 28 100.0 33 ............................ CTCCTGGTTCTGGAGATTTCGACACTTTCAGGC 2192464 28 100.0 33 ............................ TGTTGTTTATGTGCGCCCCTTTACGGCGGAAAC 2192525 28 100.0 33 ............................ TAGCAGTGGGCTCCGTTGCTCTTCCCCGGTCGG 2192586 28 100.0 33 ............................ TCGCGTTTTATGTGGTTGTCGCTGTACCAGCGC 2192647 28 100.0 33 ............................ TACCGTGAGGTCTCCAGAGCGGGCGAAATCCTC 2192708 28 100.0 33 ............................ CCCTGCTGAGCCCACTCGCACACCAACACCGAA 2192769 28 100.0 33 ............................ TGCAAACCAGTTTCCCGGAAATATGAATGACGG 2192830 28 100.0 33 ............................ TCTCCTCGTCCGGTGTGTCTGCCAGTGTGTCAT 2192891 28 100.0 33 ............................ CAAAAAGCGATTTTTTCGCAGCAGGGTCTTGCA 2192952 28 100.0 33 ............................ TCGCCAGCGGCTGCACAAGTCTGACCAAAATCC 2193013 28 100.0 33 ............................ CCCAAACCCGCAGCGCGCACAAAAGCTCGTTTA 2193074 28 100.0 33 ............................ CAGCTCGCTGTTCGGGTTTGACTGACTGATCGC 2193135 28 100.0 33 ............................ CAACAACACGGCATCCCGCGACCTGCTGAATTT 2193196 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATTTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGTTGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATATTAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTATGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCATTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //