Array 1 335185-335038 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483459.1 Corynebacterium jeikeium strain NCTC11914 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================= ================== 335184 23 100.0 39 ....................... TCCCACCCAAAGACAACCCCCGGAACCCCTCAGCGAGCC 335122 23 100.0 39 ....................... TTCCGACTGGGCCATACCCCCAAAGGCCTCGAGCGAACC 335060 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================= ================== 3 23 100.0 40 ACCCATTCCCGATCTAACGACAT # Left flank : CTGGTCAGACGAGGATCAGGAATTCGTCGCAACTGTGACCGAGTTTCCGTCCCTGTCGTGGCTGGCTCCCGACCGCGCGCAGGCCGAAGCTAGGTTGCTGGACCTGGTGGCCGAAGTTGTAGAGGACATGACACAAGCTGGGGAAACCGTGCCGGAGCCGCTGGGGTTGCGGCGATTCTCGGGGAAGTTCAACGTGCGAACTTCGCCGTCGTTGCATCGGATGCTGGCGATCGAGGCGCAATCGGAGGGCGTTTCGCTGAATACGCTGGTTAATCAGAAGTTGGCGGCGCGGTAGTTGCGGATTTTTATTGACGCCCACTAGCAAGCGGCGGTTGGAGCGGTCGCCTGGCCTGGGAGTTTCGGCGCGACGGAGGCTGCGTGGGGGCTCTTGGCGGGCCGGAATGTCGCTAGAACGGGAAAACGTCGGCGCCCGCAGAGCCCCGCAAAAATCCTCAAAGCCCTGACCTGCGATTTTACCTATTTGCAAACCAATACCATTA # Right flank : CTGCAGGTTGGTTGTCAGCGTTTGCAGGTGGCCTGTCAACATTTCCACCCAGGAAGCCGCGCGAAATTGCAGCTCCTGTACACCGCCACGGGGAACTTGGCATCAAAAAATTTTTGCGCCTGTGGATAAGTCAGATGCCGTCCACAATTTATCCTCAGTGCACCAGATTCCAAACACACTACTCACGCAAAAGGCGTAAGAATACCTCCCATGACGGGGGACAACACCAACGCAAGCACCAGCACATCCGCCACCAGCAAAAACGCCCAACCCACCAAGCCAGCATCCACCAAACCCAGCGCCTACACGCCAGCCAAGCATCACCAGCCCGTAAAACACCTGGTCGATGTGCGCCGAATCGACCCCTCCCAAGCCCGGAAATGGCAACGCTGGGCCGAGAGAGGCGAAGCCGTCCGCCTCGCCCGCGGGATCTACATACCCGCAGGTCTCTGGCGCGAGATCGGCCAACAACCGAACGCGGCAGAAATCCAAGCGCAGGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCATTCCCGATCTAACGACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1901542-1904072 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483459.1 Corynebacterium jeikeium strain NCTC11914 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1901542 29 100.0 32 ............................. GTTGTGTTCAGGTGGTCGGCTGGGTCTTCCAG 1901603 29 100.0 32 ............................. GAGCGTATTGTCTCGCGCGTTGACATATTGGG 1901664 29 100.0 32 ............................. GCTATCGACGGCCTCACAGACAAGGTTAAGGG 1901725 29 96.6 32 ............................T CGCCCTAATCTTCTCCTCCACCGAGCTTGTAG 1901786 29 100.0 32 ............................. GCCACGGCTGCATGGGAGGGCATTAAGAATGC 1901847 29 100.0 32 ............................. ACCACCGTGGCCTTAGAGGTGATGTAGGTGCA 1901908 29 100.0 32 ............................. GGCAAGGGGTGGGTGGTGACGGCGGACGGTCG 1901969 29 100.0 32 ............................. TGTATAGGGTTATCGCCCCTGCGCTGGGCGCG 1902030 29 96.6 32 ............................T GGTCTTAAAGACCTTCGGCTTAACCTCACGCA 1902091 29 100.0 32 ............................. TAGCGGCCTGCCTTGTCCTCGCGGGCTTGCTC 1902152 29 96.6 32 ............................C GAGGCCGGGGTTATGGGGTGCGGTGAAGGTTG 1902213 29 96.6 32 ............................A GTGCGGGATGAACTGCGCCGCATCCCGAAGGA 1902274 29 100.0 32 ............................. GACGCGATCACCCGCAAGGAAGGCAAGAAGCT 1902335 29 100.0 32 ............................. TCCACCCACCCCTTCTCCACCATCTCTTTAAT 1902396 29 100.0 32 ............................. CAAACGATCCAAACCGGCATCGACGGGTTCCG 1902457 29 100.0 32 ............................. TCCGCCCACCCCTTCTCCACCATCTCCTTAAT 1902518 29 100.0 32 ............................. CAGCGTTACGGTGGCCCCGGTGCTGTGTGGCC 1902579 29 100.0 32 ............................. TCTTCCGCGCCTGCTCCGCAAACGCCATCGAC 1902640 29 100.0 32 ............................. GGCGATAAGGGTGACCCTGGTGGTGTGCGGGG 1902701 29 100.0 32 ............................. GTATCTAGCCCGTCGCGCAACCCCTTGAAAGT 1902762 29 100.0 32 ............................. GTCGACCGCTACGCCCCTAGTACCCTCGGCAG 1902823 29 100.0 32 ............................. CCGATGTAGTAGTTCAGCCGTGTAGGTAGCCA 1902884 29 100.0 32 ............................. GCATCCGTGGTCGATTGAGGTTTGGATGAGGT 1902945 29 100.0 32 ............................. TTTTTCGGTGAAGGTGAAGGTTTTGGAGTTGG 1903006 29 100.0 32 ............................. GCTAAAAGCTTTAAGGAGTCCATCGGCAAGAT 1903067 29 96.6 32 ............................T GAGTGCTGCAACCCCATATCGCGTCGAAACAC 1903128 29 100.0 32 ............................. GGCACGCCCGGTGACCGACTACGCCGCGAGAT 1903189 29 100.0 32 ............................. ACTACTGACGCGCTTGGCGATGGTGACGAGAA 1903250 29 96.6 32 ...T......................... TACCAGAAGGCTGTGGTTTCTGGGAATTCTGG 1903311 29 96.6 32 ............................T GGAACGCAACCGGGATAAAAACCCGCCACGGT 1903372 29 100.0 32 ............................. TACCAGAAGGCTGTGGCTTCTGGGAATTCTGG 1903433 29 96.6 33 ............................A GGAGAAGGCGCTAGCGGAGGCGCGTAAGGCTCT 1903495 29 96.6 32 ............................T GCGTACGGTGTGATTAACCCGGCGCTCCGGTC 1903556 29 100.0 32 ............................. CCGATCGAGAAGTGCGGCAGCTCTTCGGCGGA 1903617 29 96.6 32 ............................T CTTTCGATCTGCCATGTCATCACCTCCCTAGG 1903678 29 100.0 32 ............................. CAACGCTCAGCACTTGATTGGACTCGTCGCGC 1903739 29 100.0 32 ............................. GTGTTTGAGTGCGGCGGGGTGGCCAGTGTCAG 1903800 29 100.0 32 ............................. GAGGGGAGCGCGGCGGCGAACGTGTTTAAGAC 1903861 29 100.0 32 ............................. TTCGCGCTGTTCAGTGTCAGAGAGTGCCATGA 1903922 29 100.0 32 ............................. TCGATCCGGTTGCCGTTATGTAGGTTCACACA 1903983 29 100.0 32 ............................. TCCAGGTCCCAGTGGAAGAAGGCTTGTTCCTG 1904044 29 93.1 0 .......................T....T | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.0 32 GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Left flank : TATTGATGCTGAGCTGGTGTTGTGGTCGGACTTGGAGGTCGTGGCTTCCAAACGCAATTGGTCAGACGATGGGCCAATCAGATGATGGTCTTGGTTGTATCTGCATGTCCTGCGGGTCTTCGCGGTGACCTCACAAGGTGGCTGTTGGAGATTTCTCCAGGTGTGTTCGTAGGGCGCCCCAGTGCCAGGGTGCGCGACCAGGTGTGGGAGCGAACATGCGACCTGGTGAATGATGGCCGAGCGATCATGGTGTTCCAGGCAGCAAACGAGCAGGGCTTTGATTTCAAGACTCACCGGCATAACTGGGTTCCAACTGATTTCGATGGGGTGAACTTGATTACGCGCCCCAACAACCGGGCAGCTTCGACGAGGCGGCGCGGATGGAGTAATGCGCGGAGGAGGTAAAGCGTCGGTGATCGTTCGCTAGTCCGGTAGGCGGTGGTGAAAACAAGCTGAAGTAGAATTGGCCCAACGGCTCAAAGAACCACAGCTCAGAGAGT # Right flank : TCAGGGAGTGCTATCTTGACGCGATTTCCACGGATCACCAGCATTCACCGCTCCTGAAAGGCGGGACGACCTCCAAAATGAAGAAAGCTTTCTATTCAATGCTTAACAGCAAAGAAATTCAATAGAAAGAAACGAAACTAAATTGAAAAGATCGTGGTTACTGATCTTCTGATACTCTCACATAATCAGGACGATGTTCCTTTAGGAAACTCCGTAAGCATTCGCCTGGGTTACTGCCAGGTGAAAAGAGATCGAGGATCTTATCCAACATGTCAGGCGCGATAAACACACCACCTTCGACCGAGTAGTAGACCGCACTCTCGAGTGCATATTCGAATTCTCCCCCTAAGGCGGGAGTAAAGGCGTGGTCAATCCCTGCAGTGACGAACTGCTCTCCATAACGGGAAAGAAATTCTTCGAATACATCCATCGAGGGATCCGCACGCATCTTACGATCCTCTCCGCTTTACCGCACGGTAGCTAAAAACGTGATTGTAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //