Array 1 165776-163878 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPA01000013.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-125-15 125_15_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 165775 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 165714 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 165653 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 165592 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 165530 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 165469 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 165408 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 165347 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 165286 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 165225 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 165164 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 165103 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 165042 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 164981 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 164920 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 164859 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 164798 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 164737 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 164676 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 164615 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 164557 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 164496 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 164435 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 164374 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 164313 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 164252 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 164191 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 164130 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 164029 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 163968 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 163907 29 93.1 0 A...........T................ | A [163880] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183491-182058 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPA01000013.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-125-15 125_15_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183490 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 183428 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 183367 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 183306 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 183245 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 183184 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 183123 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 183062 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 183001 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 182940 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 182879 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 182818 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 182757 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 182696 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 182635 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 182574 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 182513 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 182452 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 182390 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 182329 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 182268 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 182207 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 182146 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 182085 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //