Array 1 76721-77888 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNMD01000022.1 Pseudomonas aeruginosa strain KE3851 contig_KE3851_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76721 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 76781 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 76841 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 76901 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 76961 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 77021 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 77081 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 77141 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 77201 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 77261 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 77321 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 77381 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 77441 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 77501 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 77561 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 77621 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 77681 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 77741 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 77801 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 77861 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88601-86413 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNMD01000022.1 Pseudomonas aeruginosa strain KE3851 contig_KE3851_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 88600 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 88540 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 88480 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 88420 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 88360 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 88300 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 88240 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 88180 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 88120 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 88060 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 88000 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 87940 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 87880 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 87820 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 87760 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 87700 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 87640 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 87580 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 87520 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 87460 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 87400 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 87340 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 87280 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 87220 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 87160 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 87100 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 87040 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 86980 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 86920 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 86860 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 86800 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 86740 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 86680 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 86620 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 86560 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 86500 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 86440 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 37 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //