Array 1 121043-122658 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOM01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain 161 NODE_2_length_357587_cov_13.4203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121043 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 121105 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 121166 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 121227 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 121288 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 121349 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 121410 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 121471 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 121532 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 121593 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 121654 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 121715 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 121776 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 121837 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 121898 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 121959 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 122020 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 122081 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 122143 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 122204 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 122265 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 122326 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 122387 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 122448 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 122509 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 122570 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 122631 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 138941-140838 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOM01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain 161 NODE_2_length_357587_cov_13.4203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 138941 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 139002 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 139063 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 139124 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 139186 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 139247 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 139308 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 139369 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 139430 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 139491 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 139552 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 139613 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 139674 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 139735 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 139796 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 139857 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 139918 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 139979 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 140040 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 140101 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 140159 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 140220 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 140281 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 140342 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 140403 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 140464 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 140525 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 140586 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 140687 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 140748 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 140809 29 93.1 0 A...........T................ | A [140835] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //