Array 1 23802-25037 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQEW01000011.1 Neisseria meningitidis strain M40030 M40030_S4_cleaned_ctg_6665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 23802 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 23868 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 23934 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 24000 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 24066 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 24132 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 24198 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 24276 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 24342 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 24408 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 24474 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 24540 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 24606 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 24672 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 24738 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 24804 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 24870 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 24936 36 100.0 30 .................................... CTGATAAAAGTTCTACCATCATCACCTTTA 25002 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 19 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //