Array 1 548768-548205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRW010000001.1 Listeria booriae strain FSL L7-1387 NODE_1_length_878580_cov_25.991308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 548767 30 96.7 36 .............C................ CAAGGTTTGATGGTAGGTGCGAACGTCGGCAGCATG 548701 30 96.7 37 .............C................ TTTTTCTAAGTCCATAAAATCCATATTACCGCGCTCC 548634 30 100.0 36 .............................. GCTGTCAAAAATGTCATGAAGTCTAAATTCAAAATC 548568 30 100.0 36 .............................. TATGCCAACAGATAAATTTTTGCTTTTCCGACGCCT 548502 30 100.0 36 .............................. TTCTTTTTTCTGGCTCAGTTGCTGTGTCGCTATTTT 548436 30 100.0 36 .............................. ATTAGCCACATATGTCAAACAAAAAGTCGATGCGAA A [548426] 548369 30 100.0 36 .............................. CGTGTTCAACTATCTAATGCAGAAGAAATCGAGTTA 548303 30 93.3 35 .................A......A..... CAGACAGATGCGGCATGGGCGGAGTTTGACAGATT 548238 30 80.0 0 ..C.........A....A.....GA..G.. | C,CCT [548210,548214] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 96.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCATTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTAAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGTTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : TGCTCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCTCTAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGATGCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 68806-69424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRW010000008.1 Listeria booriae strain FSL L7-1387 NODE_8_length_119694_cov_24.123101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 68806 30 96.7 35 ....................A......... TCTTCACGTTCAAAGTAACGAGCGGAAATATCGTT 68871 30 96.7 34 ....................A......... TTGCCTGCACAGCATGCAGGATTGGTAACTTACG 68935 30 96.7 35 ....................A......... CTTTGTTGTTAGTGCTTAGGCTCTTGATGTACTCC 69000 30 96.7 36 ....................A......... TTGTATAAGGCAAGTCCAAAAACTGAAAGGAAGTGA 69066 30 100.0 36 .............................. TCGATTGTTATTTCGTTAGAAAAAACAGCACGCGGC 69132 30 100.0 36 .............................. ACGTCTGCTATTTTAGTGTTAACATTTTTAGTGTAA 69198 30 96.7 34 .............C................ GTGGTTGTTTCTTTTGTATTCCACGAAGCTTTTT 69262 30 100.0 36 .............................. AGGCGTGTGTAACGTGATTGTTGAACTGAAAACAAG 69328 30 100.0 37 .............................. GTAGTACCGTCAAGGTTTTTAACAACAATAATTTCTA 69395 30 86.7 0 .............C..........A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 97.0 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGAGGTTGAAATAAATAATCAGGTGCAAAAAAGACAAATTTCTTGAAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTGTGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCTGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAGGGATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 204589-203893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRW010000003.1 Listeria booriae strain FSL L7-1387 NODE_3_length_570036_cov_28.159138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 204588 36 100.0 30 .................................... ATCCACTTATCGAATTATATTTAGATGCGC 204522 36 100.0 30 .................................... TGTCCGAGGATATAGAAAGTAGGTGTCAAT 204456 36 100.0 30 .................................... TTGAAGATTATTTTGAAGGCACAATAATTC 204390 36 100.0 30 .................................... GTTTCGCGCGGATGAACGAGGGCGGCCGGG 204324 36 100.0 30 .................................... TGGGCGCATACGATCGTTACGAACTCAAAT 204258 36 100.0 30 .................................... ATATTTATTCCTCGTTGCAGGGCATTGAGC 204192 36 100.0 30 .................................... CGCTTGAGGAACGCGTTGGACATGACTTTG 204126 36 100.0 30 .................................... CTAATGAGTATGCAGATGAAAAAGACTTAG 204060 36 94.4 30 ..............T.G................... AAACGAAAAAGGCATACATTAGAAAGTCTG 203994 36 97.2 30 ................G................... GTGAATTAGATCAAGCAATCGCCAAAGCCT 203928 36 86.1 0 ................G..........T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.0 30 GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Left flank : ATCAGAATACTGTACAGATATCCCCATATCGAATATTTTCGAAAAATCATCAACACTTGGCAATTTCTTTGTACTGATGATTTCTTCGTCTTGAAGTGTGATAGGTAACGCCTTGCTACCGTCTTTCTTCAATAAACGAATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTATTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTAGCAAATAAATACTGCATCATTGACTACTAATCGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCACAGTAGAG # Right flank : TTTGTTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTGGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGGTCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATCTGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCTACTCTTTCGGTATGTCCAGAACTCTTTAAATATTGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 306481-307812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRW010000003.1 Listeria booriae strain FSL L7-1387 NODE_3_length_570036_cov_28.159138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 306481 30 100.0 37 .............................. AAACCCCATCTTCGCCTTTTTTATATCCGAAAGGGGC 306548 30 100.0 35 .............................. GTATAAGCTATCGATACTGCACGACTATGGATTGT 306613 30 100.0 35 .............................. CGTTAAATATGATAACGTTGAATTGTACCTGATTG 306678 30 100.0 36 .............................. ACGTATAACAAATACGATCAAGTTGGATACTCGTCA 306744 30 100.0 36 .............................. ACCTACAGCACACACTGAAGGTCGTCTCAATAGAAC 306810 30 100.0 35 .............................. CGAAACGCTATGATGATGATTCATAAAGCATGGAC 306875 30 100.0 36 .............................. TTGGTTTCATCACTCCTCATAATCAAAATTTGAACC 306941 30 100.0 37 .............................. AACCAAAAACGGATTCGTTAAGGTCATTTGGGGCGAT 307008 30 100.0 35 .............................. TAACAAAGTTATAATTTGCTCATCACCACACGCTA 307073 30 100.0 26 .............................. AGGGATCGCATTTGTTATAAGTGAAA Deletion [307129] 307129 30 100.0 34 .............................. AGCCTTCATGGGCTGATAAGGACGTCGTAGGTAC 307193 30 100.0 37 .............................. CCAGCAACAGCTCCTTTAACAGCACTATTAGCTACTG 307260 30 100.0 35 .............................. TCCTTTTATAGTGTCTGTATAAAGGGTACACAGGG 307325 30 100.0 36 .............................. TCACACTACAAAACAGGTGGCATCGAAATGCTAGAC 307391 30 100.0 34 .............................. CGAGATACGGGCCGAAGTAATATAGGATATCTTC 307455 30 100.0 36 .............................. ACGCATGTAGGAGCCGAAAATGTCAACGGTAAGCTT 307521 30 100.0 37 .............................. GAGACAGGTAAAACGGGTTCAGTATCTTTCGATTCGA 307588 30 100.0 35 .............................. TCGAATGTGCCGCGGATTGAGAACGAAACAACTGG 307653 30 100.0 33 .............................. GTTGATAAGCTGTTAAGAGTCATTGCCGCTTTT 307716 30 100.0 37 .............................. TTGTCTTCGCCTAATGAACCGAAGAGCGCACTTGTTG 307783 30 86.7 0 CG...........C..........C..... | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.4 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACGCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATATGTCGACCCCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTTGAGAGCGAGAATTCAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TTAGGAAAAGGGCGCACTTATACACCCTGCTTTTTCCCGAAGTACTATGAAACATAACACGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACATTGGCGAATGCTTTTGGGGTCCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //