Array 1 4890993-4887639 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025018.1 Streptomyces sp. M56 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================= ================== 4890992 29 75.9 32 A..T.......TTGA.T............ GCCAACCCCGATTCCATGCGGTCCTCCCTCGT 4890931 29 96.6 32 ...........G................. AGCAACCGACGCGCCAGCCTCCCGAGGAACTG 4890870 29 93.1 32 ......T...T.................. GGACGTAACGGCGTCCGTGCCGAGGTGGGTAG 4890809 29 96.6 32 ..A.......................... CGCGACACTGCCAAGGTCATCGGGATCGGTGA 4890748 29 96.6 32 ..............T.............. TGTCCGGACGGGTACAGCCTCCGGGCGCCGTC 4890687 29 100.0 32 ............................. AGATGGGCCAGGTGATCCTGTGTCGCCCGTTT 4890626 29 96.6 32 ................T............ CACAAACCCACCAAACGCCGCCCCACCCGCCC 4890565 29 96.6 32 ........T.................... ATCTACGTACACATGGGATTTGCGGGCCTGGC 4890504 29 100.0 32 ............................. ATGGGGACACCAGCCGTGCCAGATGTCCATGC 4890443 29 93.1 32 .........................CG.. TGTGCCGCGACCTCCAGACCGGGCCCGTCCTC 4890382 29 100.0 32 ............................. CCCACTCCGGCTCCGATGCCGGGCCGGCTGCC 4890321 29 100.0 32 ............................. TCGTGCAACGTCCGCGCGCGGTACTCCGATTC 4890260 29 100.0 32 ............................. CTCAGCGAGGCGGCCGCCGCCATCCGGGGCCA 4890199 29 100.0 32 ............................. CCGAGCCGGTCCGTCTGGGGTTGCGTGTCAAG 4890138 29 96.6 32 .......................A..... ACGACGGTGATGTCCGGTTGGTCCATGCCCGT 4890077 29 100.0 32 ............................. GACAGCTTCGAGATCGGATGGTCGATCGGTGT 4890016 29 100.0 32 ............................. TCGACATCACGCCCGCACCGCTTCCCAACACG 4889955 29 96.6 32 ..................A.......... CCCGACGCGTTCACCGGAGGGCATGACAAGTC 4889894 29 100.0 32 ............................. GAGACGAGACCACAAACCCCAGCCCTGACGTG 4889833 29 100.0 32 ............................. GGCGCCGCCGCCCTCCCCGAGGGCCATGTCGT 4889772 29 96.6 32 ..............T.............. ACCGATCAGAGCATCACCCTCACGCTGCGGAA 4889711 29 96.6 32 ..............T.............. GGACGGAAGGAAAGCCCCCTCGCGACCGCGAA 4889650 29 100.0 32 ............................. CCTCCGGGCGGTCGACCAGCAGCGTGTCCTCG 4889589 29 100.0 32 ............................. GTGGCATCGGCGATGGCCAGTCCCATACGGGA 4889528 29 96.6 32 ......T...................... TGCCCGTGCGGCGGGGAGGGTCACGGCACTGA 4889467 29 100.0 32 ............................. CCTGCATCAAGCAGGGCCTGCGCCAGGAAGAT 4889406 29 100.0 32 ............................. TCAAACCCCACCCCTGAACAGTGCGCTCGGTT 4889345 29 100.0 32 ............................. GCGCGTCCAGCGCTCCACGTCGGCCGGCTCGT 4889284 29 96.6 32 .......T..................... AACAAGGGCGGGGCCAAGAAAAGCACCCTCGC 4889223 29 100.0 29 ............................. CCGACGCGCGGCCGGTGGGCCGGACCTTG 4889165 29 86.2 32 A.CTG........................ GCCACTACGTCGTACGTCTCCAGGGCGTTACG 4889104 29 100.0 32 ............................. AGCTACGACTTCCACCTCGGCCGCACGATCGG 4889043 29 93.1 32 ...................C........T ACCGGCGGTACGTGATTCCGAACGCGGGTCGG 4888982 29 100.0 32 ............................. GACTCTGGCGCCAGCGTGGTGTGCCCCCGCAT 4888921 29 100.0 32 ............................. CCGGTGGGCTGGAAGCTCATCCCGTACGAAGA 4888860 29 100.0 32 ............................. GCGATGTCCTCCACCCGGACCGAGGTGACTGC 4888799 29 100.0 32 ............................. CTCAAGGGGTCGGGCCAGTCGCTCTCACCCTG 4888738 29 100.0 32 ............................. AGCCTGGGCCACACCCGACCGAGAGGAAATCC 4888677 29 100.0 32 ............................. GCAGCGTCAACCTTTGGCCGGAGCTATCAGTC 4888616 29 100.0 32 ............................. GTGGGGGTGCCGGTAGTTTCGGGTCATGCCCG 4888555 29 100.0 32 ............................. GACCCGTTGGGGTCCGGGCACATGCCCCAGAA 4888494 29 100.0 65 ............................. AGGCCGTCCGCCTGACCACGGCTGACCAGGTCCAGAATGGTGAGGTTGTCCCGGTCGACCTGGTC 4888400 29 100.0 32 ............................. CCGGCGCCGGTGAAGGCCAGTTCGTCGGCGTA 4888339 29 100.0 32 ............................. GCGGCGCCGGCGCCGAACGCGGCTGTCATGAC 4888278 29 100.0 32 ............................. ACCTTGAGCGCCTGGCGGGCTGTGAGCGCGGC 4888217 29 96.6 31 ..........T.................. CCCACTGCCCCAACGGCATCCCCACCGGATA 4888157 29 96.6 32 ..........T.................. TCCAGCGGAGGCGGCTACCGTGATGACTGACG 4888096 29 96.6 32 ..........T.................. TCCAGCGGAGGCGGCTACCGTGATGACTGACG 4888035 29 100.0 32 ............................. AGCGACCGGCTCGTGCAAGTGATCAAAGCCGT 4887974 29 96.6 32 ..............T.............. GCCACGCGCACGACGACGGCCAGGAGCTCGCC 4887913 29 93.1 32 .........................C.T. AGCCGTCTTCCGGGGGAGTGGGTCGCCCCCAT 4887852 29 79.3 32 .......G...G..T......G..A...G ACCATGTACTACACGGATCGTGTCCCGACGAC C [4887847] 4887790 28 75.9 32 ......TG.....TG.T........-.G. TTGGGGGCCGCGAGCGAGGCGTTGTCCGGAAG 4887730 29 82.8 31 G..T.....A....G.............A GCTACAAGGCGCGGTGACTGGAGACTGTCAA C,A [4887703,4887712] 4887668 29 79.3 0 .......T....GTG....T......G.. | A [4887644] ========== ====== ====== ====== ============================= ================================================================= ================== 55 29 96.4 33 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CTCGAAGACATCGCGGTCCTGCCCATCGACATGCACATCCAGCAAGGCGAGACCTTCACCTTCCGCACCGTGGTCAACCCGGCCCGCGAACGCCAGGTTTGGAAGGAGACTCCGCAGGGCCGCCAGCTCACCCGCCAAAGGCTCGCCGACACCACCCCCAAGCACGCCCGCGAATGGTTCGCCGACCGCCTCCAGCCCGAGGGCGCCGAACCCGTTGGCCGCGCCGGCATCCGCCGAATCGGCGCCACCGGCGACACATCCACCATGGCTGTCCGCATCCTCCCCAAACTCACCTTCGGCGAGCGCCACCGTGGCCAGAAACTCGGTCGCGCCGAAATTCGCGGCGCTCTCACCGTCACCGACCCCGACGCTTTCACCCATGCCCTGGCCAACGGCATCGGCCGCGCCCGTGCGTACAGCTCCGGCCTGATTCTGGTCCGGCGGCAGGGCGGCGATGGGGGCAGAGCGTGATGTACGAGTGGGTCCAGCAGCGGATCGAT # Right flank : TCCGTCCGGCAGAAAACAAGAAGTGGAGGCAATCATCCTGTCGGCCGATCAGAAGGAGAGTGTATCCGTCGTTTGGTGACTAGCATACGGATGCTTTGGGAATGGGCTTGGCTATGACTTCGCAACTCGCAGAGTGGGCCTGGAAGACGGCGAAGGCGGAACTGGAGTCAACTTTGCCGCGACGCTGGGCACACTCGCTTGGTGTGGCCGCAAGGGCGGTGGAACTTGCTCCCTTGCTTGGCGATTCGGCAGGGCTCCTGCGTGCGGCAGCAGTTCTGCATGACATTGGGTATTCACCTGGGCTCGTGGCAACCGGGTTCCATCCGCTTGACGGTGCCCGGTTCCTCCGTGACGTGCATGGTGCTGATGAGCGGCTGGTGCGGTTGGTGGCGAATCACTCGTTTGCATTGTTGGAGGCCGAAGAGCGTGGCTTGAGGGAAACACTGGAGGAGGAGTTTCCGCTGCTTGACGATCCGCTGCTGGTGGACGCTCTCGTGTGG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4900033-4899394 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025018.1 Streptomyces sp. M56 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4900032 29 100.0 32 ............................. GCGACCACGGTGATCTCCTTGGGCACGGTCCC 4899971 29 100.0 32 ............................. TTGGCCGCATGCCGGACCAGGCGCATCTGCGT 4899910 29 93.1 32 ...T.............C........... TGGACCGTCTACGACGAGCTGTTCATGGAGCT 4899849 29 96.6 32 ........T.................... GATCGACCAAGGGCGCGACTGCGTGGCCCTGA 4899788 29 96.6 32 ...T......................... TGGAACCTGAGCATCGACCTGCGGGCGCAGGG 4899727 29 96.6 32 ...............A............. GTCGCCCAGTCCATCGCCGCCAACGGCCCCTT 4899666 29 100.0 32 ............................. GTGTTCAAGGGCATGGTCGGCATAGTCGACGC 4899605 29 89.7 32 ...T............T......C..... GATGCTCACTCCCAGCTCGCCGGGCTCGACGG 4899544 29 86.2 33 ...G.G.......T..T............ CAACGTCACGCACGGATCGCACTGGATGAACAC 4899482 29 89.7 32 ..A........G..............T.. TACACGATCAGCGTCATGGCCACGATGCCCGC 4899421 28 89.7 0 ........-.T...........C...... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 94.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGGTGGGCACTCTTGCCGACGTCCAGGCCCAGGAACACGCCCACGTCTTCGGTGTCGGACATCGCACCCTTCCAGGAGTGTTGAACGTGCTGGCCACGGCAGTGGTGTCGTACGCGCGCATCCACGTTATGCAGACCTGCCGCCCGCGGACTGTCCGGCGTTGCGCCGGACCGGACGGTGGCCGGACCTCTGATCAGCGTCTCCGACGGCACCTCCCAGGCCCGGCGGCACCACCCCCCAGGTCATGCCTTCGACAGGGGGCAAAAGTCATACCGGGCCCGGAGGCCAGCGGCCCCATTGCGGGACCGCGAAAAACATAACGGGGAGAGAGAGACGCGACTGGGGTGCTGGGGGCCTCATGTTCTTGCGAAATGATTTGGACGGTGTCGAAGCCGAAGATTTTACGGTGTGGACCCCGAAGGTATATGCCTGGAATGCCGGACTTTGTGAAAGTGCTTCGTGGAGAACCTGCTGCCAGATAGACATGCAGGTCACGGAGT # Right flank : GCGTGGAACGATAAGGTCATTGCCGAGTCCGTAAGGTTCCATATATGTGGCGTTGGGGCCCTCAACGACACTCAAGCGGTGTTCACGGTCGCCCTTGCTCGGGGCCAGGCTCTCCAGGGTCGGTTCTTCAAGCCTCAACTTGCTCAACCTTCAGCAGGGGGCAAACGGACAAGGCCAGTGCTTGGGTGGTAGGTGACGCGTCCTTCGGGGCCGCGGATGCAGGAGCCTGTCGGGGACAGGACGAGGGTCGCACGGTGGTGTACCGCGGAGTGAGGAAGCGGCTGCCACGTGTCTAGCGGCGGTAACGGGTTGTCGCCATGGAACCAGGAGTGGGGGATGGCGAGTGTGTTTCCCAGCAGGGCGCGCTGCTGAGCACGGTGGGCGGCACGGGTCTCCTCGGTCTCTTGTGCTCGGTGATCGCGCAGATCGGCCGGGAAGTCTCCTGCGGCGTCGTATGTCAGCTCGCCGTCGTCTTGTTGGTAGAGCAGGATGGCGTCGAT # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8726949-8725796 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025018.1 Streptomyces sp. M56 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 8726948 29 96.6 34 ...........................C. TCGGCGTAGAGGCGGTCCCACCAGTCGGTGGTGG 8726885 29 96.6 41 ...........................C. TTGGGGGACCCACTCAGTGACACGACAGCGCGCCCTGACAC 8726815 29 89.7 38 ....C......................CG TACCGCCGGACCGCTGGCGGCCGGAGGATCTGCCACAC 8726748 29 100.0 37 ............................. TGAACGAGGCCATGGGCGTATGGATCGGGGTGACCGG 8726682 29 100.0 36 ............................. CTGCGCCGTGCGGTGAGCTGTGTGAAAGCCCCGGAG 8726617 29 96.6 36 ...................A......... ACCACCTCTTGCTCGTGCTGCGTCACGCCGACTGGT 8726552 29 96.6 34 ......................C...... ACGATGCCCACGAGTGGCTGTGCTGGCACGACAC 8726489 29 96.6 38 ..................A.......... AAGTGCAATGCGCCAAAGACGAGTTGTGGGACCCCCGG 8726422 29 100.0 36 ............................. ACGGGCTGGGCCGTCACAGCCAGGCCTGCAAGCTCG 8726357 29 100.0 41 ............................. GTCATCCGCCCGGCCAGCAGCTCCCCCGACAGCCGGTCGGG 8726287 29 100.0 37 ............................. CGCTCCGACATTCACGCCCGCCGCGCCCAGCGGCCCG 8726221 28 96.6 37 ..................-.......... ACGTCCCCCGCGGTCGAGGGCCGGGCGCCGTACCGGC 8726156 29 96.6 37 .....................A....... ATCACCGTGGGGTGCACGGGTCCTGTCGCCTCTGCCA 8726090 29 100.0 36 ............................. GCGGTGAGCTTGATGATCTCGTCCATGATGGATCTC 8726025 29 96.6 39 ....................A........ CTCTGGCTCGGCCCGTTCCCACGCGACGGCCGTGGTCTC 8725957 29 93.1 40 ....C....G................... ACCTCACCGAGGCGGACATCTGGATCCGGATCGCCTCGCG 8725888 29 89.7 36 C................T...A....... GGACACGTCTGAGCATGGCAGACACAGCGCCTGCCT 8725823 28 72.4 0 ......G-..G.....CT...A...A..A | ========== ====== ====== ====== ============================= ========================================= ================== 18 29 95.4 37 GCCGTCATCACCCCTGGAGGGGTCGCAAC # Left flank : CCCGCCACCCTTCGTCATGCAGCGACTGAGCCATCGCGGCATCGTGACTGCCAAGCAACTCATACATCACCGCCCGCGCTGGCCCATGCACCTCCTCCCACCGCAGACTCGGCCGATCCGGCTCGACATCCACCCTGATCCGCATCACACCCCCAACGACTCCGCCAACGACCCTGCCGCTCTGCTGACACAGCGACCAGCCCGGACAGGACAGGACCCTAGCCGAGCAAAGGGAGGTAAGGTGCGAAAATCCATAAAGTATCTTGAAACGCCTTCGTCGGGGCTATACAACGCACTCGTCAAAGCTCCACCGACGTGTTGCCGCCAGTGGAACCGAACCCGCAAACTAGCGGGCACCACTGACAACAACCCCCGCACGGCGTGTAGTGCTCCCATGGCTCAACGCCCTGACCTGCTCTGATGCACTACTGTCGGGTCGCTGCAAAATCCGCCCGGGAACGCCACAGGAAGACAGCTCCGACCTGTGGCTTTACCCTCGG # Right flank : GTGGACAACGCGACGACCGCCAACAAGGTCTCGGGGTGACATCAATCCAGCAATATTCACAACGCCGACGCGGTGCTCTCAGTGCCGCTCGTCTTAACACTCCACCCACCAAGCGAGCAGGGGAAATAACGGAACGCTTAAGTAGGTGGAAACCCTCTAGGGCTGATTAAATACCCAGCAGCGCACGCCGAGCCAGAATGCTGTTGCGATCCCTCCAGGGCATGGACACCTGCGTTATCCCATACCGCAGCCGCGCCCGCCGTTGGCGGATCATGGAATTTACAAGAACCCGGACAGAGACGTCAAATGGGAGCGATAAATCGACCTGCAGCCGATCAAGGAGGCAGCGCTCTACAACATCTGCGGCCACTCCTCGAAAATCTGATCGCATACAGCAGGGCTAGATAGCAGGACGGCCCGCCGACTGAGCGGGGCTCCGATCATGCAGGCATCCCCTTACCTTTCAGCCCCTCCTCGCCTCGCACAGGCAAGGGACTGTT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCATCACCCCTGGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 8735444-8738021 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025018.1 Streptomyces sp. M56 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 8735444 29 100.0 37 ............................. TACGGCCGGAGCTCAGGCCAGGCGACCGGCCGCCGCG 8735510 29 100.0 37 ............................. ACGCGGGCAGGTCCGGTCTGGATCTGCGCGATGGCTG 8735576 29 100.0 36 ............................. ACCGCCTTGTGCGACCGCGATGTCACGGGGGCGCTG 8735641 29 100.0 37 ............................. AGGAAACCCTCACCCGCACCGAACAGCAGACCCTCGC 8735707 29 100.0 36 ............................. GCGCGGGAGATCTTCTGGAGCGGCTTCCAGCTCACC 8735772 29 100.0 36 ............................. ACGTAGCCGCCCCTTCGGGCACACAGCGCCTTGTAC 8735837 29 100.0 35 ............................. GTGATTCCGGGGCGTATCGCCGAGTGGTTCGGGCG 8735901 29 96.6 36 ..........................G.. CACGAGGGCGACTACGTGGTGCTGCACTTCGAGGAC 8735966 29 100.0 37 ............................. ATGCCGAGGGCGCGGACCGTACGCGCTACCACCACGT 8736032 29 100.0 37 ............................. GCGCCAGCACGTCAGCTGGGCCGATCCGGGCCGCCAG 8736098 29 100.0 39 ............................. GTTCCCAGATCCTGGACCCCCAGGTCCGGGCCGTCGCGG 8736166 29 100.0 35 ............................. GCGGTCCTGTGGCCGCGGCAGCAGCCATCTACGGC 8736230 29 100.0 37 ............................. GGCTACTGGAGCTGTACCGGCTGCACGCCGACACCGG 8736296 29 100.0 36 ............................. GAGCTGAAGGTGGCGCCGTCCGGGCTGACCGGTAAG 8736361 29 100.0 35 ............................. TGGCCGCTTATTTCCCGTTCACGACGGCCGTGGGA 8736425 29 100.0 35 ............................. TTGATGAAACCAATGCGGAGGAACTGTCCGGCCGC 8736489 29 100.0 37 ............................. AACAGCTTCTGCCGACGGCACCGGGACAGGCACCGGA 8736555 29 100.0 38 ............................. AGCACCCGCCCAACGACAACGGCCCCCGGCATCCGCAC 8736622 29 100.0 36 ............................. TGCGCGGCACGCCTGCACTGGGACAGGTATGACCGC 8736687 29 100.0 36 ............................. CGCGGTACCGGTAAGCCGCTGCACAGGCAGCGGCGA 8736752 29 100.0 37 ............................. GCTCTGGCCTTATCCTCCACGGCCTTCTGCCGCGCGG 8736818 29 100.0 36 ............................. ACGGTGATGCGGCCGGGGAGCTGCACTTCGGTCCAG 8736883 29 100.0 37 ............................. ACAGTCGGGAGCGGCGGGAGCAGCGGCGGGACCGGGC 8736949 29 100.0 36 ............................. CCACCTACGACGTTCCGTCGGCCGTCGTCCTGTCGT 8737014 29 100.0 36 ............................. CCACCTACGACGTTCCGTCGGCCGTCGTCCTGTCGT 8737079 29 100.0 36 ............................. CCGACCACCTACGGGGTCTGCCCGCTGACTGGCCGT 8737144 29 100.0 35 ............................. TCGACTACGACCCGCAGGGCCACCTGAGCGAACAG 8737208 29 100.0 36 ............................. GTGTACGAGGAGTAGAGGTCAGGCATCAGGCCCCCT 8737273 29 96.6 36 ........T.................... AACGCTGCGGGCGGTGTGAGGCCGGATGCCACGCGG 8737338 28 93.1 37 .......................T-.... TTGATCACTTGCGGTTAGGTGGCCCGCTCCCCCTGGT 8737403 29 100.0 37 ............................. GGGCGTGACCGCTGTGCGCGGTGGCCCGGTGCTCCTC 8737469 29 100.0 36 ............................. ACCAGCGCCCGGCAGCCCCAGCAAGCACCGGTCCAG 8737534 29 100.0 35 ............................. TGGCACCAGTCACCGCGCCGAACGTGTTCATGGCC 8737598 29 100.0 40 ............................. CGGTGCACGGCCTGGACCCGCAGGTCGCCGAGGTGGTCCA 8737667 29 100.0 36 ............................. TGCCGCAGCCGGGTTACTACCCGCGCCCGGGGTGGG 8737732 29 100.0 35 ............................. ATCTGGCTTGCGTCCGCGTTTGGCGAAATACGCGG 8737796 29 100.0 37 ............................. ACCGTCAAGCCCTTCCGCCGGCCCGCGGGGTTCTCCC 8737862 29 96.6 36 ..................A.......... CCGCCGGGTGGACCGACACCGATGTCTGGCAGGCGG 8737927 29 100.0 37 ............................. GCGAGGTCGGCTTGGCGCGCCCGGGTCGCTTCCTCGG 8737993 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 40 29 99.6 36 GTCCTCATCAGCCCTGGAGGGCTGGCAAC # Left flank : CGACGACCGTCTACCACCGCACGCTCAAGCGCAAAGTCAGCTACGAGGAACTCATCCACCTCGAAGCCCTCAAGATCGTCCGCCTGTGCCTCGAAGACAAGCCGTACAAGCCCTTCCGCCCCTGGTGGTGATCAGCATCTTCGTGATCCTCGTCTACGACACCGCCGTCGAACGCAACCCCAAGGTGCTCAAGACCTGCCGCAAGTACCTCCACTGGACACAACGCAGCGTCTTCCAGGGCGAACTCTCCACTGCCCAGTACCGCGCGCTCATGGCCACTTTGAACACCACCATCGACCCCGAGTACGACAGCATCGTGACCTACACAGCCAGGTCCCCGGACATGATCGAGTCCAGTACCCTCGGAGTCGCCCTGGGCGGCCCCGGCGACATCCTGTGAACCGCTCTGACCTGCACAGATGCACTACCGCCGGATCGCTGCAAAACGACGCCCACAGACGCGAGGGTTTCGCTTTCTGACCTGCGACTTTACCGTCGGG # Right flank : CATAGCGATGGAGCCGAGCAGCTGCATGGCCGGTCTCGCGTTTTCATCAGCTTGACTCTGTCGGGGATCTTGGAGTTGCCGAGGTTAGCTGCCCAGGGTTCGCCAGGATTTCAGCCGGGGAATCTCGCGCTGGTCGAGGTAGCCCTGGAAGGCAGTCGGTCGACGGGGGATGGGGGGTTCCTCGGTCGGTTGTAGTCCGCTGAGGTGTTCGATGTTCACGGCGATGGCTGTCAGGACGTGCTGGATGTGGGCCTTTCCCTGTCCTCGGTAGCGGCAGCGTCGCATGCCGTGCCCGTGGGCGAACTCGTTGACCATGCTCTCCACTCCGGAGCGGACCGCGTAGCGGGCCTTCCACTCGGGCGTTTGTTGCTCGGTGCGGACGCGGAGTTGCAGGTCGCGGAGCTCTCGTGGGGGGGAAGCCCACGGTGCGGGCGTTGTCGGCGGTACTGGTGCACTGGGTGCGGGCAGGGCAGGGACGGCACTGGCGCTTGGTGAACCGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAGCCCTGGAGGGCTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.10,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //