Array 1 365595-366696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASRN010000002.1 Thermonema lapsum strain DSM 5718 Ga0373292_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 365595 30 100.0 37 .............................. TGATTACCTCAAATTTTTGATTTTGGTTCATACTCCT 365662 30 100.0 35 .............................. TGTAATTGTGCTCGTTGGTGAGGCTGGCGTCGGTA 365727 30 100.0 38 .............................. AGCTGGTGAATACACACCAGATTCACAGGAGGAGTACA 365795 30 100.0 38 .............................. TTTCTGAATGTTAAGCAACTTGCTGCATATCGTTCAGC 365863 30 100.0 35 .............................. CTCTATCGGGGATGCCTCTTAGCTTTACCCACTCT 365928 30 100.0 36 .............................. CTCGTTAAATAAGCGGTACAAGCTAACCATCGCTTT 365994 30 100.0 35 .............................. GAGCAAAAGAGCGTCGATGCCTTCACAGCCTGTTA 366059 30 100.0 35 .............................. TGTTTTTTGGTAACTTTTCATTGTTAAAACGGCGG 366124 30 100.0 36 .............................. TGAGGAATTGTATATCATATAAAGCCTCTCAGTCAA 366190 30 100.0 35 .............................. AAGGTGAAAGTAAATGGTGTTGGCAGACAAAGACA 366255 30 100.0 38 .............................. GTAAAATCTTCTGGCGGTGCCTGCGAAGGCACTACCAA 366323 30 100.0 38 .............................. TTGCTGCACAGTATCCCCATGCTCTTCCTCAAAAGCGA 366391 30 100.0 37 .............................. GCTTTTATTTCTTGCCACTGGTACTTATCAAATAATG 366458 30 100.0 36 .............................. TGTTGGGTTAAGTTGATGATTCTGTACTGCATAGTT 366524 30 100.0 49 .............................. CGCTCGACAAGCTCGCTGACCACTGCGTTTCGTAATGCTCTACCTAATG 366603 30 86.7 34 G..GCC........................ AATTCTGGCTTGGCGTACCAGCTTACGTCCAACC 366667 30 86.7 0 ......................TG...TT. | ========== ====== ====== ====== ============================== ================================================= ================== 17 30 98.4 37 CTTTTAATCGCACCAATGTGGAATTGAAAT # Left flank : TTACGACGTAGAGCAAAAGCGCACGGCAAAGATGCTGAAACTCTGCCGCCGCTATTTGCATTGGATACAAAACTCGGTCTTCGAAGGCGAAATCACCGAAGCCAAGTTGCAAGAGCTCATTCATCGGGCGCGCCGGCTCATAGACCCCGAAACCGACAGCTTGATTATCTTCACCAGCCGGCACGAGCGTTGGCTCGACAAACAAATCATAGGAAAAGAAAAATCAAGCACCGACAACTTTTTGTAAAACATTGATTATGAATGATTTGCAAATACAACAGTCGTCGAAGTCCAGCAAATGCCCGTTCAACCCAGCAGAAAATGCCTTTGTTTGAAACAAATACAAATATAAATTATTGATTTACAATGACTTACAAAAGTCGTCGAACTCCAGGCAAAATTACACTATTGCCGTTCGACGACTTCCACCCCGTTTTCAAGCACAAAAAAACACCGCCTGCACTTGCAAGAATGCATTTTTTTACTTAACTTGCCTACGG # Right flank : TCTTGGGGCTTTTCTATAAGCCCCAATGTTTTTGTAAGTGTGTTGTTGTAAAATTGAAATGGTCCTATGGGCAAAAAAGTATTGCTTGCTACTGTAATGTGCATTTTCGGCGCATCGTCTTTGCAGGCGCAGGGAGAGCGCTATACTGTTTTTGAATATGAACAGGTGCCCGCCCTCGAAGGTGATTTCAATGGTGATGGTGTCAAAGAATATGCATGGCTCTATGCCGCTCCTACCGTGGATATGGGTTGCGTGTATGAGCCTTGTCTGGGGTATATCGTTTTTTCTAATCCCCGTTTAAAACCCATAGAGGTAAGCAATGCCATTGCTGGTTATTTGGTCAACGAAGGCGACCTAACCGGCGACGGCGCCGACGAAATAGGGGTATTGCCCATGTGGTTTACCAGCAACTACAAGTTTTACCATCTGTTTAGCTACAACCCCAAAACCGCTACCTTCGAAGCACTCATTGAGCCCCTCACCGTCCGGCTCGATATGTA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 524009-521558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASRN010000001.1 Thermonema lapsum strain DSM 5718 Ga0373292_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 524008 30 100.0 37 .............................. GAGATGTTGGGGTGCACGATGGGTAGCGGCGACGGGC 523941 30 100.0 34 .............................. CTGCTGCGCGGGTAGATACGTGCAAGCGCCAATA 523877 30 100.0 37 .............................. TACTGCTTTTCCAGCACTTTCCGTCCAAACGCATCCA 523810 30 100.0 35 .............................. ATCTGATACGGTGGACTATTTTCTAATGGAGTACT 523745 30 100.0 34 .............................. CGTCGTCATAGCTCTCAAACCAAACATGCCTTAG 523681 30 100.0 36 .............................. TAAGGCGTCCTTTTTTCTGTTAAAACTCGCTGCTCG 523615 30 100.0 34 .............................. TTCAAACCCTGCGCTATCAAACTTTGTGCGTACT 523551 30 100.0 35 .............................. TTTTATACTTTTCGGCGTCTATTTGCTTTATTTGC 523486 30 100.0 34 .............................. AGCGAAAATAAAGTCTTTGACCACCACGCAGGAG 523422 30 100.0 37 .............................. TTCAGGAGCTGGAGGCAAAGGTAGACGAAATAAGCGG 523355 30 100.0 37 .............................. TTGCGTTTGCGTACCGATATCTTTCGATGCTATTCAT 523288 30 100.0 35 .............................. TCGCACGTAATCAATTTAGACACGCTGCAAGAATA 523223 30 100.0 35 .............................. GCTTCAAGTACGCTAAAACCGGTGATGCGGCGAAA 523158 30 100.0 36 .............................. GCTACTCTTCAAAAACATGAAAGATGTAACACTTGA 523092 30 100.0 37 .............................. CTGGTTAGACGCAAGACTAAATTTTGTGCGGAAATTG 523025 30 100.0 34 .............................. TGTTAACATCATTAAACACAATAATTCATACAAG 522961 30 100.0 36 .............................. CTCGGGGATTGGCAAGACACGCCAAACCCCCCCGAA 522895 30 100.0 35 .............................. TCTCGTATCGTGTCGCTATTTCCTGCCTCCGAATA 522830 30 100.0 39 .............................. TAATGTCCAGACCCATTTGTTTTGCTAACTGCTCTAAGA 522761 30 100.0 34 .............................. ATGACTGACTGAAGAGCACGACATTTCACAATGA 522697 30 100.0 35 .............................. TGCAAATCGCTTGCCGATACGCCGCTCACCACGTG 522632 30 100.0 38 .............................. CGCGCAAGCGAGCGCCTGCGCGCGGTGGTGCTTACATA 522564 30 100.0 35 .............................. GAATGAAATAGATGGTAGTCGGTACACATCAGGCG 522499 30 100.0 37 .............................. CTGGTTCTCTTTAACCGCCTTTGGCTCGTTTAAAATG 522432 30 100.0 35 .............................. TACCTTTTGTTTTTGTTTAACTCAAAGATAGCAAT 522367 30 100.0 37 .............................. GTGTTTCCAGCCACAGGGAAAACAGCCCCGCCCCCTC 522300 30 100.0 35 .............................. CTTCTGTCAGGTCGCTATCATGTGATGCGTCATAA 522235 30 100.0 49 .............................. GGCTCGACAAGCTCGCTAACCACTGCGTTTCGTAATGCTCTGTCTAATG 522156 30 90.0 40 ...GCC........................ GCATACAACGATACATCTAAGCCTTGCTCTAACCCAAACC 522086 30 100.0 34 .............................. TGCGTATCCAAAACATTTGCTTTTCGTCAAAGCA 522022 30 100.0 34 .............................. TAGCTACTGCAGCAACTTTTGACATCAAAAAGCC 521958 30 100.0 35 .............................. GATTTCGTGAACGTTACTTATTTAGAAAGCATGCA 521893 30 100.0 39 .............................. GCTTCTGGGGCTTGGTGCGCCCCACTGATCTCTTAACTC 521824 30 100.0 49 .............................. GGCTCGGCAAGCTCGCTAACCGCTGCGTTTCGTAATGCTCTGCCTAATG 521745 30 93.3 49 ...G.T........................ GGCTCGACGGGCTCGCTAACCGCTGCGTTTCGTAATGCTCTGCCTAATG 521666 30 93.3 49 ...G.T........................ GGCTCGACGGGCTCGCTAACCGCTGCGTTTCGTAATGCTCTGCCTAATG 521587 30 90.0 0 ...G.T.......................A | ========== ====== ====== ====== ============================== ================================================= ================== 37 30 99.1 37 GTTTTAATCGCACCAATGTGGAATTGAAAT # Left flank : GTCTTTCGTAGCATAGCAAGCGGCTTTTGGGCACATGCCGATATTTTCTTGGGCTGGGCGCCACGGGCAGTAGCCCGCAAGGTAATGAAAGAGCTCATTGTGGACTGGCACGGCGAAGCCATAGCACAAAGCAACGGCAGCGTGGTTTACCGCTTCGAGCAGCCAGCTTTTGAGCTGAAAGAAGCCAAGCGCCTGCGTGCCCAGCGCAACGACGACTTCGACAGCGAAAATACCTATATAGAACTAAAAAGCTGATTATCAACATCTTAAACAAATTCAAGTCGTCGATCGCCTTCTTTTGGGAAGAAAAAAGCACAGAATCGCGAGTGCTTTTCAGAAAAAACAGCAGGTAAATAGCTGACTATCAACGAATTAACCAAAGTCGTCGAACTCCAGGCAAAATTACACTATTGCCGTTCGACGACTTTTTACATTTCTTTCAGAAAAAAAATACCGCTTACGCTTGACTTATTCGCATATTTCCTCTATATTTACCACGA # Right flank : AAAATGTGGAATTGAAAAAATTGAAATGAGTAGCATTTGCCGGAAGAAGCCCCTGTGGTTTCTTCTGGTTTTTTTTATCAGATGCCCGCCGCTATTGCTACCTCTTCCTTCTTCTTTACATGATTTTAGCTAATTTGCTTTTGCCTTCAATGCTTTTGTGCTATGCGTGCTTTTCTGCCCAAGAAACGGTGGCTTTTTTGGATGCTTTACTTCTTGCCTTTCGTGTTGATGCGGGATGTGTATCCTTTTTTTCGCTTTGCTATGTTTGCTACCCCTGTGTCGCGGGCTGCTTACACCGAACGCTACGAATGGTATGTGTGTTATCGGCAGCGGCAATCATGGCAATTGCTTTCAACGGGAGAGATAGGCTTGGATGAAAGTTTTTTTTATTACCGGGCAAGGAAAGCCAACATCACCAAACAGGGCGATGCTTTCTTGGCAATGCTCATGGAAGTGTATCGTCAGAAGAAAAAAGAACTGCCCATAGCAAGTTTGCTGGT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 641846-642734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASRN010000001.1 Thermonema lapsum strain DSM 5718 Ga0373292_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 641846 30 100.0 37 .............................. AGTTTTTAGACGATGAAGATGATTATCGTCGAGAGGT 641913 30 100.0 37 .............................. AGTTTTTAGACGATGAAGATGATTATCGTCGAGAGGT 641980 30 100.0 37 .............................. TTTAATGGTGGCTGGCGACCGTATGTTTTCAAGTATA 642047 30 100.0 49 .............................. GGCTCGACAAGCTCGCTAACCGCTGCGTTTCGTAATGCTCTGCCTAATG 642126 30 90.0 49 ...GCT........................ GGCTCGACGGGCTCGCTAACCACTGCGTTTCGTAATGTTCTACCTGATG 642205 30 90.0 35 ...GCC........................ GCGCGCTGGTATGGAGGCACTTGGCTGCTATATAT 642270 30 100.0 35 .............................. CTCGGGTTGTTATAGTATAGCGCCGCTTTAGGGTT 642335 30 100.0 36 .............................. AGATCAATGCTTGAGATTTTGATAATCTCGAACTGC 642401 30 100.0 49 .............................. GGCTCGACAAGCTCGCTAACCGCTGCGTTTCGTAATGCTCTGCCTAATG 642480 30 90.0 37 ...GCT........................ ACAAAAAATTGCGAATATTGTTTGGCAGTGCTTCACG 642547 30 100.0 49 .............................. GGCTCGACAAGCTCGCTAACCGCTGCGTTTCGTAATGCTCTGCCTAATG 642626 30 93.3 49 ...G.T........................ GGCTCGGCAAGCTCGCTAACCGCTGCGTTTCGTAATGCTCTGCCTAATG 642705 30 90.0 0 ...GCT........................ | ========== ====== ====== ====== ============================== ================================================= ================== 13 30 96.4 42 GTTTTAATCGCACCAATGTGGAATTGAAAT # Left flank : ACTGTTTTAATCGCACCAATGTGGAATTGAAATCGAGCTCGGAAAGAGAGGTTACTGCATCGACGCCGGTTTTAATCGCACCAATGTGGAATTGAAATTCGGCAAGATAGCGTCGACGGTATTTAAAACAATTCAAGTTTTAATCGCACCAATGTGGAATTGAAATAAGGGATAGAAGCCCGCCCCCTTCTACGAGGGCAAGTTTTAATCGCACCAATGTGGAATTGAAATCCTTTTCGTCCGTCCTCGCCTTTTGCTTGGCTTCGTGTTTTAATCGCACCAATGTGGAATTGAAATATAGACGGAAAAGGCGTGCTTTCATGCAGGTTAAGTTTTAATCGCACCAATGTGGAATTGAAATTCTTTTACTACTTTAATGCCGTTCTTTAGGACTTTTGCCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TAATGTAGCTACGAACCGTTATGCGGCATTGTAAAATCAAAACAACAATAAAATGGAAAATCTTAGACCAAACGGACAAAGAGCAAAGAATGCTATCACTTTAATATGGATTGTATTGGCATTGGAGATAATATCATTAATCTCTGGTTACCTTCAATATGACTTATTGCAGACAGTTGCTAATGGTGGTAAAATTTCAATGGCAACAGCAACTGCAAATGACACAAGAGAACAGATGATAGGCACAATTTATATAATCGTCTATGTTATATCAGCAGTAACATTTATACAATGGTTTAGGAGGGCTTACTTTAATCTTCACCAAAAAGTAAAAAATCTGGCATATACAGAAGGCTGGGCAGCAGGAAGCTGGTTTGTTCCAATAGTGAACTTATATAGACCGTATCAAATTATGAAAGAGTTATATCAAGAGACGAAAGAATTGTTAAATAAAAAAGGAATAAATGTAAATACAAACCTCACAACAAGTTCATTAGGTT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCAATGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 87% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //