Array 1 8245-14453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRJN01000207.1 Xanthomonas oryzae pv. oryzae strain YN24 XOO_yn24_contig000207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 8245 31 100.0 35 ............................... CTGAGTCGAAGGCATACAGCACCAAGACCACCACG 8311 31 100.0 37 ............................... TCGCTGCAGGAATCGATGGATTGCAGGACGGTCTGGC 8379 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 8445 31 100.0 36 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGCC 8512 31 100.0 35 ............................... ATGGTCGCACGAGCCGAACGGTCATTCCAGCGACC 8578 31 100.0 35 ............................... TGCCGGGTCTGTGCTGGTGCACTCTGGCAACTCTG 8644 31 100.0 36 ............................... GATCTGCTGTATGCTCTGCGTGACAAGGACAACCAC 8711 31 100.0 35 ............................... AACTGGAGACTGCATATTGATGTGCCGTCAGAGAC 8777 31 100.0 35 ............................... TTCCGATTGTTTCCTGCTGCTATGGCACTGCTGGC 8843 31 100.0 34 ............................... CTCTGGGACACGGCGGATATGGAGATGTGGGAAA 8908 31 100.0 34 ............................... TATTCGACATCCTCAAGCACAAGGGTATAGAAGG 8973 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 9037 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 9103 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 9168 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 9234 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 9301 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 9367 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 9432 31 100.0 36 ............................... ATCGACCAAGGCGACAGCGCCATCGGGCAAAAAATT 9499 31 100.0 35 ............................... TGGCCAACGTAGAAGCTGCAACCCTTGGCGTTGCC 9565 31 100.0 34 ............................... ACGTGCGATTAAGCAAGGGCGAGTTATCTTCCGT 9630 31 100.0 34 ............................... CAGTCTTGAACAATGTCATCATACGCGATGAACT 9695 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 9760 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 9826 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 9891 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 9955 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 10020 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 10086 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 10153 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 10219 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 10284 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 10350 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 10416 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 10481 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 10545 31 96.8 34 A.............................. ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 10610 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 10675 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 10741 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 10807 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 10873 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 10940 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 11007 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 11073 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 11140 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 11205 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 11270 31 100.0 36 ............................... ACTCTAGTCTTTGATGTGCCTTCCGTCGCTGGGAAG 11337 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 11403 31 100.0 35 ............................... TCGCTGAGGGCAGTAAATACATCTGGCCGTCTATC 11469 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 11536 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 11602 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 11668 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 11737 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 11804 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 11869 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 11936 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 12001 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 12067 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 12132 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 12195 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 12259 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 12323 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 12389 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 12454 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 12519 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 12584 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 12650 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 12715 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 12781 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 12846 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 12913 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 12979 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 13048 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 13114 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 13178 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 13244 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 13308 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 13373 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 13438 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 13504 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 13572 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 13638 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 13704 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 13770 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 13835 31 100.0 33 ............................... TTGGTCTGCGATACTACTACTGGAACAGTGTTA 13899 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 13965 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 14031 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 14096 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 14161 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 14226 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 14292 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 14358 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 14423 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 95 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //