Array 1 258-705 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830143.1 Pseudomonas aeruginosa strain HMSC061A10 Scaffold315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 258 28 100.0 32 ............................ GACCTCGTCGATCTTCTTGCCCAGGGCGAAAT 318 28 100.0 32 ............................ TCGGTGACGCTGGACTGGTCGAGGGGCGTAGA 378 28 100.0 32 ............................ ATATCCAACACCGGGACGGGAGTCCGATCCTA 438 28 100.0 32 ............................ AAAACGAGCCACGGGTGTCGGCCTTCGACTCA 498 28 100.0 32 ............................ GAGCACAGTCAGCGACTACCTATTACAAACAG 558 28 100.0 32 ............................ CAGGACCATGGTCACGCCTGGACCAATCTGGA 618 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 678 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : GCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAGCGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCACTGCCGTATAGGCAGCTAAGAAAATACTGACTCAGCCAGGGAAAAGTCACTTGGAGTTCACTGCCGTATAGGCAGCTAAGAAAAGCGTGCCATGGCGGCGGTAAGTCAAACCGTTGTTCACTGCCGTATAGGCAGCTAAGAAATGGTCGAACAGATGGCGGTCCTCGGCCAACTGGTTCACTGCCGTATAGGCAGCTAAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGTACAGGCAGCTAAGAAATCAAAGCGCGAACCATCCAACGGCAGTTCGCAGTTCACTGCCGTACAGGCAGCTAAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 808-1015 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830143.1 Pseudomonas aeruginosa strain HMSC061A10 Scaffold315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 808 28 100.0 32 ............................ ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 868 28 100.0 32 ............................ AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 928 28 100.0 32 ............................ TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 988 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGGGCGAAATGTTCACTGCCGTACAGGCAGCTAAGAAATCGGTGACGCTGGACTGGTCGAGGGGCGTAGAGTTCACTGCCGTACAGGCAGCTAAGAAAATATCCAACACCGGGACGGGAGTCCGATCCTAGTTCACTGCCGTACAGGCAGCTAAGAAAAAAACGAGCCACGGGTGTCGGCCTTCGACTCAGTTCACTGCCGTACAGGCAGCTAAGAAAGAGCACAGTCAGCGACTACCTATTACAAACAGGTTCACTGCCGTACAGGCAGCTAAGAAACAGGACCATGGTCACGCCTGGACCAATCTGGAGTTCACTGCCGTACAGGCAGCTAAGAAATGGGCCGGCGCCTACGCGGCGCATCAGCCGGTGTTCACTGCCGTACAGGCAGCTAAGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : AACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGTACAGGCAGCTAAGAAATCAAAGCGCGAACCATCCAACGGCAGTTCGCAGTTCACTGCCGTACAGGCAGCTAAGAAAATAAGGCTGTCGTCACAGCGCTGCATGGCTGAGTTCACTGCCGTACAGGCAGCTAAGAAATGCCGATCGCGCCGGAAGCGGTGAGCCAGTTCGTTCACTGCCGTACAGGCAGCTAAGAAATCGGACAAAGACAGCCTCCGGTCATAGGGTAGGTTCACTGCCGTACAGGCAGCTAAGAAATTGAGCTTGTCGTTGTACTCGTCGAGGCTCATGTTCACTGCCGTATAGGCAGCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1118-1385 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830143.1 Pseudomonas aeruginosa strain HMSC061A10 Scaffold315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1118 28 100.0 32 ............................ TCAAAGCGCGAACCATCCAACGGCAGTTCGCA 1178 28 100.0 32 ............................ ATAAGGCTGTCGTCACAGCGCTGCATGGCTGA 1238 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 1298 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 1358 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : GTTCACTGCCGTACAGGCAGCTAAGAAATGGGCCGGCGCCTACGCGGCGCATCAGCCGGTGTTCACTGCCGTACAGGCAGCTAAGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCACTGCCGTATAGGCAGCTAAGAAAATACTGACTCAGCCAGGGAAAAGTCACTTGGAGTTCACTGCCGTATAGGCAGCTAAGAAAAGCGTGCCATGGCGGCGGTAAGTCAAACCGTTGTTCACTGCCGTATAGGCAGCTAAGAAATGGTCGAACAGATGGCGGTCCTCGGCCAACTGGTTCACTGCCGTATAGGCAGCTAAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATTGAGCTTGTCGTTGTACTCGTCGAGGCTCATGTTCACTGCCGTATAGGCAGCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTGCCGTATAGGCAGCTAAGAAAACGTCGGAACGCAACTACCTGACCGCGTTGGTGTTCACTGCCGTATAGGCAGCTAAGAAACGCAACGTTCGTGATCTGCCGTTCGCCGCCCAGTTCACTGCCGTATAGGCAGCTAAGAAATCGGCGAGGCGATCGATCATGCGAATCAGCAAGTTCACTGCCGTATAGGCAGCTAAGAAAATTGGCCGTGCAAGGTCCACCAGTCGATGCTTGTTCACTGCCGTATAGGCAGCTAAGAAACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1602-1809 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830143.1 Pseudomonas aeruginosa strain HMSC061A10 Scaffold315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1602 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 1662 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 1722 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 1782 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : NNNNNNNNNNNNNNNNGTTCACTGCCGTACAGGCAGCTAAGAAATCAAAGCGCGAACCATCCAACGGCAGTTCGCAGTTCACTGCCGTACAGGCAGCTAAGAAAATAAGGCTGTCGTCACAGCGCTGCATGGCTGAGTTCACTGCCGTACAGGCAGCTAAGAAATGCCGATCGCGCCGGAAGCGGTGAGCCAGTTCGTTCACTGCCGTACAGGCAGCTAAGAAATCGGACAAAGACAGCCTCCGGTCATAGGGTAGGTTCACTGCCGTACAGGCAGCTAAGAAATTGAGCTTGTCGTTGTACTCGTCGAGGCTCATGTTCACTGCCGTATAGGCAGCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTGCCGTATAGGCAGCTAAGAAAACGTCGGAACGCAACTACCTGACCGCGTTGGT # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 256-1003 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830157.1 Pseudomonas aeruginosa strain HMSC061A10 Scaffold433, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 256 28 100.0 32 ............................ AGAAGCGTCGGCCGTTGGCGAAGAACCAGTAC 316 28 100.0 32 ............................ CGTCTGCTTCGGGCGACGATGCGACTGCGCCC 376 28 100.0 32 ............................ TGTTGCGCGGCCAGCGCGGTGTTGACCTGCTC 436 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 496 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 556 28 100.0 32 ............................ TGACAGCCCGGCGTTCACCGAGCTGGCCAGCT 616 28 100.0 32 ............................ GTGGCGTTCAATTGTGATGTCGTGCTGCTGCC 676 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 736 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 796 28 100.0 32 ............................ CAAGGTCGTCACCAGTACTTCTTGGGGCGGGC 856 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 916 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 976 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTCCCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9737-9531 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830157.1 Pseudomonas aeruginosa strain HMSC061A10 Scaffold433, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9736 28 96.4 32 N........................... TCGCATAATGGGCATTACGTGTAAATGCTCGC 9676 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 9617 28 89.3 31 .....................A..A..T GTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 9558 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 90.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACGTCGTGTGCATGTTCACTGCCGTATAGGCAGCTAAGAAAACCCAGTGAAATCAGTCCCCGCGCTCGTATCGGTTCACTGCCGTATAGGCAGCTAAGAAATTCGACGGCCACGCCTCAGCCCGGCCCAGGCCGTTCACTGCCGTATAGGCAGCTAAGAAAGAGATCATCCGGCGCAAGCGGGAACAGCTGCTGTTCACTGCCGTATAGGCAGCTAAGAAATCACGACCTTCTCGAACGTTCCCAGGTACGTAGTTCACTGCCGTATAGGCAGCTAAGAAAAAGGTCAATTCCCAGGTGAAGCAACTGGTGGCGTTCACTGCCGTATAGGCAGCTAAGAAAGTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGCGTTCACTGCCGTATAGGCAGCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTAATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 10224-9835 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830157.1 Pseudomonas aeruginosa strain HMSC061A10 Scaffold433, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10223 28 100.0 32 ............................ ACCCAGTGAAATCAGTCCCCGCGCTCGTATCG 10163 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 10103 28 100.0 32 ............................ GAGATCATCCGGCGCAAGCGGGAACAGCTGCT 10043 28 100.0 32 ............................ TCACGACCTTCTCGAACGTTCCCAGGTACGTA 9983 28 100.0 32 ............................ AAGGTCAATTCCCAGGTGAAGCAACTGGTGGC 9923 28 100.0 33 ............................ GTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGC 9862 28 96.4 0 ...........................N | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTAGTTCACTGCCGTATAGGCAGCTAAGAAAAGGCACTGCAGGCCTACCGGCGTACCCTGCGCGTTCACTGCCGTATAGGCAGCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTGCCGTATAGGCAGCTAAGAAAACGTCAATGCAGAACTCGAACGTCGTGTGCAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACTGCCGTATAGGCAGCTAAGAAATCGCATAATGGGCATTACGTGTAAATGCTCGCGTTCACTGCCGTATAGGCAGCTAAGAAATCCTTCGGCTCCGCCGGCCGGATCGCTGCATGTTCACTGCCGTATAGGCAGCAAAAAATGTCTCGAAGTTCATAAGCGGGCTTCGGGCGATTTCACTGCCACATAGGTCGTCAAGAAACGGCCAGCAGCCCTGAAGTATCGATTAATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //