Array 1 148051-148297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000011.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================ ================== 148051 38 100.0 31 ...................................... TGCATCTACCACCCCGTCATCTTGAGCGACC 148120 38 100.0 32 ...................................... AACCGGGCGAAGGGTTCACCGATAATGATTGG 148190 38 94.7 32 ................................GA.... CCGGTTGGGACGTGCCACGTTGCCGTGCGCAG 148260 38 92.1 0 ............T................C......G. | ========== ====== ====== ====== ====================================== ================================ ================== 4 38 96.7 32 GTCGCAACGGCCCACGGGTCGTTGCGCGGATTTCAACG # Left flank : ACTACAACCGCAAGACGCGGGTGTCCTTGGTGGACATTTATGGCAAGGACGGTGCTTTTTTGGGTTCGTTCAGCCATCCCAACAACGGTTTCAAGCACATGATTTTCAAAAACGGTTTCGCCTACACCTTGGAAACCACCGAGGACGACGATGTCGAGGCGGTGCGTTACCGCGTCGCGCTCAAGCCGGTATCCTCCTAACGGGTGGAAGCCGGCGTCGCTGAACCCGATGGACGAGGCGGGGGATCGGCCCGCGACTTGGTCGCGGCGATTAATCCGCGGCGGTCGGTCGTGGGGGGTGGGGCGAGGTGGTTCCAAAGTGAATCCGCCGACCCTAATTGAACATAAAAACCCGGGACTTCGGCGGATTTTATAAGGCAAATGTTTTGAGTTGGTTGCGAGAAGTCAGCGAATATTCGCAAGTTAGGAGGGACTCAAAAACAGACATCTGCGAAAACGGCCTCTTAACACCCTGGGAATAAGTATGTTAAAACGGCTGCA # Right flank : GAACAGATACCCATGCCAATTTGGGATTGTAATTCGGTTGGTATCACTGTTTGGTTGTACTTTCAGCATAAAAGGGACGCAAGCCCGTAAACCGTTGGCAAGGTGAAACCTTGCCGGATTTAAGCCCAGGGTGGCCACCCGGCGCGGAGCAGCCGGTTGGCCACCCTGGGTTCGGATGTAAAGAAAAAAGGTTCTCTGCAGGAGAACCGGAGCCCCGGCGCCAACCTCAAATTCCCCTGGCGGTTGCGATGGATTTAACGATTGTTTTTTCGCGAAAATATGTCAGCCTGGTTTTAATTTTCACGAAGCAAAAAGCAGGGCGTCATGGGGCTGTCTCTCGCCAAAACCTGGTTGCATAGGGTATTCCCGACCAAACACCAAGAAACCCTTTTAGATGATGAAGCGGTTCGGGCAAGGCGCCATCGTGACCGCGCCGGGATCTGTCGCAAACAGAAATGTCCGGCCATGATTGTTGGCGGCGTTTCGGACCATGTCCACGT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGGCCCACGGGTCGTTGCGCGGATTTCAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 160324-161476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000011.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 160324 37 100.0 32 ..................................... TAAACCCATATGTTTTAAATGTTTATAGCTGT 160393 37 100.0 32 ..................................... ATCGCAACGCCAGTGGTCGCCCTGCACGCGCG 160462 37 100.0 35 ..................................... ACGCCGTTGTGTGGGTATGGGGGCGATCTGCTCGA 160534 37 100.0 33 ..................................... TCAGAGTCAATGTAACCACAGAAGTTGGAGGTG 160604 37 100.0 34 ..................................... TTCCAGCTCGGGACGAGTCCGGCGCAGCAAGAGA 160675 37 100.0 33 ..................................... CCAGTCCGGGCGAAAGTCACTGGGTTAAACAGC 160745 37 100.0 32 ..................................... GCCGAGTAAAATCTATCCAATACCGTGTGGAT 160814 37 100.0 32 ..................................... CTTGGCTGTATTCGTAAAGGTCACCGGAAGGG 160883 37 100.0 33 ..................................... AGGATGACCCACTGGAAACGGCCGTCTTTGATT 160953 37 100.0 32 ..................................... GTGATGGGGATGCCAACGTTTGCCGCCACTGC 161022 37 97.3 32 .............A....................... GTGGCGATGCGTGGAAAAGCAAAGCTCGGTCG 161091 37 97.3 32 .............A....................... CGTTCGCGTTCCAGCCGCTCGAAAGCGGCGAG 161160 37 97.3 32 .............A....................... GGCCATCCCCATCGTGGAGGCCATCGGGATTC 161229 37 97.3 33 .............A....................... CCGCGCAAGTGACGGGCTTGGCTACGATGCCGG 161299 37 97.3 34 .............A....................... GTCCACCATGGTGTGATTTGGCTGAATCGCGAGG 161370 37 94.6 33 .............A.............A......... ATCGCCGACGGATCGCTTACCGGCCGTGCACCA 161440 37 83.8 0 ......TG..................T....TTC... | ========== ====== ====== ====== ===================================== =================================== ================== 17 37 97.9 33 GTCGCAACGGCCTCCGGGTCGTTGCGCGGATGGAAAC # Left flank : GCCGTTGTTGGGGGTGATTGGATGTTGATTCTGGTGACCTACGACGTGAGCACGGAAACGAAGGAGGGTCGCGGGCGATTGCGGCGGGTGGCCAAGATTTGCGAAAGTTACGGGCAGCGGGTGCAGAAGTCGGTGTTTGAGTGCCAGGTAGATCCGGCGACGCGGGCCAAGTTGCGGACAAGGTTGTTGGGCGCGATTAAGCCGGAGGAAGACAGCTTGCGTTTTTACGTGATGGGCGAATCGGGATTCAGGAACGTGGAGCACCACGGTTTAAAGCCAAGCCAGGACATGCGCGGCACGCTGATCGTGTGAGTATGGCTGGTCCGCCGATGTGAAGTGAACATAAAAACCCGGGACATCGGCGGATTTTATAAGGTGAATGTTTTGAGTTGGTTGCGAGAAGTTAGCGAATATTCGCAAGTTTGAAAAGGGCTCAAAAACAGACATCTGCGAAAACGGCCTCTTAACATGCTGGGAATAAGTGTGTTAAAACGGCTGCA # Right flank : CGGGGAAACAAGGGGCGCTGTTTGCCGGAACCCGACACCGGCGTCGCTGGGGGGGGGTGTCCCTTGGTTTTGGTTTGGGGTTGTTGGCCAAAAGTGCTTTGATTTGGTTTCAATCCAGCCGCTGCCGGCGGCGTTAAGGGAGCTTGATCAGGTGTTCGCCGTCTTTAATGGCAAAAACGTCGCTGCTGTTGAAAACGGGGACCAGTTGGGCGTCTTCCTTGGGCTCGCGTTTTATAAAACGGCCCTGCTGATCGAAGTAATCCCAATAATTATCGAAGCCTTTGTTGTTGGCTTTGATTTCGGCAATATACCCGTCCTTGGTTTTGGCGGCTGTTTGTAAAATGGAACGGAAGGTAAAAGGAACCCCTGGCGATTTGCGCAAAGGGAAGGTATCAATCGGGCCACTGAGCACCTGAACCATAGCGTCTTTTTGGGTCTCGTTTTGTGGGAGTTCGGTGTAGATCCGAATGTGGTATCGCTCCTCTTTTTGGAAGGAAGGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGGCCTCCGGGTCGTTGCGCGGATGGAAAC # Alternate repeat : GTCGCAACGGCCTACGGGTCGTTGCGCGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 44416-46702 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000024.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold22_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44416 29 100.0 32 ............................. TGGTGCTGGCATTACTGGTTACCTCCGTCGGT 44477 29 96.6 32 ..............T.............. CAAATGCAGGAGCCCATCTATTGCCCGCGTTG 44538 29 100.0 32 ............................. GCCGAAAGCGGATCGCCGCCGCCTATCAGCAA 44599 29 100.0 32 ............................. GATTGGCGCGCAATGCATAAGGGTCACTTTAT 44660 29 100.0 32 ............................. AGGTGGACGTATGAATGATGGCAAACGAAACA 44721 29 100.0 32 ............................. AAATTGAAAGGGGACTCCTATGAAGCCATACA 44782 29 100.0 32 ............................. TCATTTTCATTACCGCCCACGTTGATATTGAG 44843 29 100.0 32 ............................. ATGATGGCATGCGTGGTTTTTTGGACAGTCAA 44904 29 100.0 32 ............................. AAAATTGACCGCACCATCGCGGAAATCATTGA 44965 29 100.0 32 ............................. GGCACAACTCCACCAAAGGATGCCGAGTGTAT 45026 29 100.0 33 ............................. GAGCATGTGACCCGACCAACTCCCGAATCCCTC 45088 29 100.0 33 ............................. TAGCGGCTACGATTGATGCCATGGAAGTGTTTG 45150 29 100.0 32 ............................. ATAACCCGCAAGCACGACCTTAGCGTGAATCC 45211 29 100.0 32 ............................. GAACAAAAATTATCCGATGAGGAGCGATTAAA 45272 29 100.0 32 ............................. AGTTCGCGTCGCCACGCATCAAGGGCCGCGGA 45333 29 100.0 32 ............................. TGTGCGTAACAGGGGCGCGCTATGGTGGGCGG 45394 29 100.0 32 ............................. CCGGGGGGTGCTGGGTCAGCCTGATCATTGGC 45455 29 96.6 32 ............................C GTTATGAGCTGATCCACCAGCGCGGCCGACGC 45516 29 100.0 32 ............................. CGCCGCCAGCTTGGCAGCCAAGGGATTGTTGG 45577 29 96.6 32 .................A........... GCTTTTTTCAAGGGCTTCCTTGCTGCAAACCT 45638 29 100.0 32 ............................. CTCCCCGTCCACCACGCGGACTTCTTCTTTTT 45699 29 100.0 32 ............................. GTATCTGCTCGGAGTTCTTTAGCTTTAACTGG 45760 29 100.0 32 ............................. GGTCGGGCTGGATGTGCGCGCCCTTCTCAAGC 45821 29 100.0 32 ............................. GCGCGCTAACGCATAAAATCCCGGCGAAAGCT 45882 29 96.6 32 ............................T CCAGGTCGGCGTGTATTTCCCGTTCACGGTGT 45943 29 96.6 32 ............................A CGAACGACCGAAGGCGCCCACCATGCATGGGC 46004 29 100.0 32 ............................. GATTGCCGCCCAACCATCCGTTGTTCCAGCGA 46065 29 100.0 32 ............................. CTTGGAATGGGTGGACGTTTCGGTAGTGGTCG 46126 29 100.0 32 ............................. CCATTCGAGTTTATAGCTCGGCCGCTTCATAC 46187 29 100.0 32 ............................. GGAACTGAGTGATCCTGTCGGTTTTGCGCGGG 46248 29 100.0 32 ............................. CTGATTCAACCAGGTTGCGGCGACCTCCTGAT 46309 29 100.0 32 ............................. TTCGAACAACCCGTTTGTGACAGCTTATCTTG 46370 29 100.0 32 ............................. TCAACACCTTCGCCCAAGAGGTACTGCGCAAG 46431 29 100.0 32 ............................. GCTGTATTGCAGCTCCCCTTTGGCATCCCGGT 46492 29 100.0 32 ............................. CGCCTCCAAAAACAACGTTTCAATGTGTTTGT 46553 29 100.0 32 ............................. TAATACCATCGAATCCCTTCGGACCACCCTCA 46614 29 100.0 32 ............................. GCGGTTTGCCTGGCCAACCGTGTCGATGTAGT 46675 28 89.7 0 .....................-C...G.. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.3 32 CTGTTCCCCGCACGCCCGGGGATGAACCG # Left flank : CGGGTCGCGTTGGACTTCAACTTTTAGCAAAACGATACCCAGCCGACCGCGGCGGCTGGGTATCGTTTTGGGCAAGGCGCGCGGCGGCGGGGATAGGGTTTTTGCGAAGGTTTTTGCGGATGAGACAGCGCAAAAATGGACTAAAATCAAAAAGAAGAGAAACCCACCCCAGAATAAAGGAACGGCAAAAAGACGACAAACCAGAGTCACTCAACTCAATCAAAATGATCGACCCATAAATCAGACAAAGTGCCGAAATCCCAACAAGCGACTGTTTAACAACCACTTACAAGAATCTGCTGGTAAAACCGTATTTTGCCAAAATCGACCCATTTCGTCTCCAGAGAACGGGACACAAAGAACAATCCACAAAACCCTATTTTCAAACAATTTAACAACCCACCAACAAGTCAATACCAATCACATGAAATACCTAAGCAAAATCGGTACATTTTTTCAAAACTTCCAAATCACCAAACTATCGTGTAAATTTGCTTAGT # Right flank : GCTTGCGCCGCCACCGTGCCTTTTTCCTCGCCGTCGCGCCAAAAAAAGCCGGTCATCGCAAGCCAGTTGACCCCGCGTCGGTTGCCGCCGCCGCGCGGGGCGTTATCCCATGTGTTGACTGGCTAATTGGAGCAGCGGGGTCGCCGTCACCTTGGTTTTGCCGCCCAAGCTCTCGCGGTAGGCCGCCGAATGCAGGAACACCTGCTTCAAAAATGCGCGGGTGGCCGGGTCCTCGCTAAGCCCCTCGAGATGGGGCAACACATCCGCAACCACAAAATCGTAGGGAGCATAGAGCGGCACGTCCATCTGCTGACCCGATTCGTAATCATCCATCAACACCAACGCGAAATCCGCGCACATCGCCGTCGGTAACCCCGGCAAGGTATCGCGCGCGATCCGCGTCAGCGCCAACGCCGTCGCGCCGTGGATCATCATGTTTTGCATTTCGCGCTGATCATCGCCGAGATCCACGTCGTACCGTTCTTCAAGCGCTTCCCAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGCCCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70561-71395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000024.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold22_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 70561 37 97.3 35 .....G............................... TTGGATAAAGGCGGCGCCTTATCTCGATTTGGTGA 70633 37 97.3 36 .....G............................... AGTGCGCGTGAAGGTTAAACGTGTTCCTCATCTCAT 70706 37 97.3 35 .....G............................... CTGTCCGGTCGACCCATGGCAACGCGGTAGGCCTG 70778 37 97.3 36 .....G............................... CTCATGTCGGCCACAAACTCGGGAACCGGCCAGATC 70851 37 97.3 35 .....G............................... GCATTGCCGTCAACGCAACGTGGTTCATTGGGATT 70923 37 100.0 35 ..................................... CGGAAAACACTGAAAATACAGACGAAAACGAATCT 70995 37 100.0 35 ..................................... TACCGTGCTGCAAACCATGGCATCAGCCACACGTT 71067 37 100.0 36 ..................................... GCTGCCGTCGTGACGGCTGTGTCTGCCTGGGTGCGA 71140 37 100.0 36 ..................................... AATGGACCACTGGCGCGTTTACGCGTACATCAGAGA 71213 37 94.6 36 .....G........C...................... TCAATCAGGAATTGGTAGATATCGTTCTCGGTGACG 71286 37 100.0 36 ..................................... GTCGATGAGGCGGGCTGAGGACATTAGCCTGTTTGG 71359 36 75.7 0 ............-...TGT.G....C.AT....A... | A [71374] ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 96.4 36 CTTAGTGACCTACATCCACTACAACAAGGATTGGAAC # Left flank : GCCTGCTACGCGCCGGGTCCCAACCCTGGGCTTCAATCCTGCACGGCGTTGCCGTGCCACCGGTTCACACGCCGGCGTCCCATTCTCGTTGCGCCGCTTGTTGTTGCATTTCCCCGGCCTATCCCCGCGCCAGCCAAACGCCCCTCCGCCCCCCTTCACCCTCACACAGACCCGACACCCCGATCAAAGTCAACATCTTGCACATGACTGTCCCCATCGCCGTGTTCGCGTCAGACGATGGGGTTGGATGACCGACCAGGGTATGGTAAAAATCGAGCAAAGCCCGCGGAAAAAAATCGCGGAACGAGGCAAACTTTCCGAACTTAAGCCGGTCAAGGTGCGCTAAGATGAAGCAAATCAAGCGATTAGCAAAGAAAAAACTCGCGATTTGGGAGGTAAAACAGGCTGTTTTCCAGTGGATTCGCCCCCAAAAAGGCCAAAAGATCCAACAGGTTTTTCGCCATAACCCCCAGGAAAACAAGCACTTCTAAAATTTAGGA # Right flank : CCAATTGTAACGCCGCTAATTCACTACAGACTCAGTATTTTGTACCACTGGCTTGGATATCGTGGCTCTTATTTTCCAGCATAAATACGAACGTGGCCTCTATTTTCAAATATTCGCTGCATAATCTTTCCACCCAGTTCCCAACGCCCAACGCCTTGTTTGAAAACAGATCTTCTTCTAAAAAATTCAACTTTTAAATACACCAAAAAAATACTTCCCTCTTTGAACCTCCGGCACATCCATCCTAAGGGCAAAAAATTGCCGAGGCGAGGCAACACCAAGGATGAAGCCCGCCGTCGGTCACACAAGCGGGGCGGTTTCCGACAAGGCGTCCTGCACCAGCCCTTGCCGCCAGGCCCAGAGCGCGGCGCCGACACGGCCCGCGACCCGAAGCTTGCGGTAAATGGACTTGAGATGGTTTTTGACGGTGTTCTCGCTGATGCTCAGGCGCGCGGCCACGTTCAGGTTTTCGTATCCCAAGGACACCCATTTCAGCACCT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAGTGACCTACATCCACTACAACAAGGATTGGAAC # Alternate repeat : CTTAGGGACCTACATCCACTACAACAAGGATTGGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 526677-527075 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000002.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 526677 38 97.4 34 .....................................C AATGACCGGCGACAATGTTCAACAAATTTTGATT 526749 38 100.0 34 ...................................... AAACCCGCGCTTGCTGTGAAATAGGTGGGACACT 526821 38 100.0 34 ...................................... GTGATCCTGACGGGTTTCCCGTCCACAAAGACAC 526893 38 100.0 34 ...................................... CCAGCGCGGCCGTGGTCTCACCAAGTAACGGCAC 526965 38 100.0 35 ...................................... CCTTGCCGCCGTTGCGGCTAATGCGCTTGTTAACG 527038 38 68.4 0 G..C.C......A.G....G...C...C...GCA...C | ========== ====== ====== ====== ====================================== =================================== ================== 6 38 94.3 34 CTTAGTGACCTACATCCACTACAACAAGGATTGGAACT # Left flank : ATAGATAATCATTGAATCGCAGCTAATCATAGGTTCCAGGGTGGAAAATAACCGTGAGCCAGGGCACGTGCGCTAAATGGGGAGCAATGCCCACGAGGGAACAGGCGGTGGTGGCGCAATGGGGGTAAAGCGGCGATGGGATCGGCCTCAAACGTGGGTGTGGCTTGCTTGCATGCTTGGCCGCAAAGCCTGAGGGGTCGGACCAAGGCGAGCGCCGGGGTTCATCCCGGCGGGAGAGGGCTTGGTTTTTTGGGGCGGGGCTGTGATTGTGATGGGTGCACGCGTCGTGGAAAAAATGTTGGAACGAGGCAAACTTTCCGAACCCAAGCGGTCAGAGATGCGTTAAGATGAAGCAAATCAACGAATTAGCAAAGAAAAAACTCGCGATTTGGGAGGTAAAACAGGGTGTTTTCCGGTAGATTCGCCCCAAAAAAGGCCAAAAGATCCAACAGATTTTTCGCCGTAACCGCCAGAAAGTAAAGCACTTCCAAAAAATAGCT # Right flank : CCTCACTCCAGCAGTGACATCGCCGTGTCCAGCACGTCCTTGACCATTTCGGGGTCGGCTTCCAGCTTGGTGGCGATGAACAGGCCCTGGGCGATGCAGCAAAAGGTGCTGGCAATTGCGCGCACATTCACCCCGCGCGGCAACTCGCCCACTTCCTTGGCGCGGACCAGCGTCGCCCGAATCGCGGCGGTAATGGTTTCGAAGTGCGACAACAGCATCCTTTTGATTTCCTCATCCGCCTCGTTCAACTCCGCGATGGTGTTGCCCACCAAACAGCCCGGGCTGTTCGGGTCCAGCGCGATTTGACCCATCACTTGGAACACGTCTCTTATGTTTTGCAGGGGGGAACCGGGGCGGTCCAAAATTTCTTGGATCATCACTTCCTGCGCGTGGCCGTAGCGGTTGACCGCTTCCATAAACAAACCGCGTTTGTCGCCCCAGGCCGAGTACAAACTCTGTCGCGCGATGCCCATGGTCTCCACCAAATCGGACATGCCCGA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAGTGACCTACATCCACTACAACAAGGATTGGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 13-1095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000029.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold27_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 13 37 100.0 33 ..................................... TGCCAGCATGCTGACCGTTTGGCCGGGCGTAAA 83 37 100.0 35 ..................................... GCGAGCTACTGGGCCACGGCAACCGAGAACGCCGA 155 37 100.0 32 ..................................... AGAACGATAAACGAGGTGTCGCATGGTAGCCC 224 37 100.0 32 ..................................... ACAACGGGAAGGATAGGGCGTCCTTGTGGACG 293 37 100.0 34 ..................................... CTTCCTGCCGAAAGACGTGGAGGACCCGGACGAT 364 37 100.0 32 ..................................... GGCGCGAACGTCGCGGCACGACTCCGCAAGGG 433 37 100.0 33 ..................................... CTCGGTTTTGTAGGCTGACGGCCCATGGATGTG 503 37 100.0 32 ..................................... AGGTCGACTTGTGATCCCGTGGCTTCCTTCTG 572 37 100.0 33 ..................................... CAGCGCGGCCTCGGCGCACCGTGGGCACAGTTC 642 37 100.0 32 ..................................... CGTGTTTTCGTAGGGGATCGATTCGAAAGCGG 711 37 100.0 33 ..................................... TTACGGCGATTCAGGGGTGGACGCCACCGGCGC 781 37 100.0 32 ..................................... CAGTCTCAATGTTACCCGTAACCATTCCACCG 850 37 100.0 33 ..................................... GAAGAAGCTCGCGCCGCGCCGTTCCCTTTGGTT 920 37 97.3 32 .........G........................... CCGCTGACCACTCTGCCAGGTGGCTTCAGTCA 989 37 86.5 33 .....................A.C..T......T..G GCGTCAATTTTGGGCTCCGGGACGGTGTATGAT 1059 37 81.1 0 ..................GT..C........T..GCG | ========== ====== ====== ====== ===================================== =================================== ================== 16 37 97.8 33 GTCGCAACGCCCCTCGGGTCGTTGCGCGGATGGAAAC # Left flank : CGCCGACAATAGG # Right flank : GCCTCTTTTTGGGCAAGCGAGGAATCCTATGAACATCATTGATTTGAGAAGTGATACCGTCACCCGACCTACCGAAGCGATGCGCGCCGCCATGGCCGCGGCCGAGGTGGGGGACGACGTTTACGGCGACGACCCCACCGTGTTGCGCCTCCAGCACCATCTGGCCGAACTGGCCGGCAAGGAAGCCGGTCTATTTTTGCCCAGCGGCACCCAATCCAACCTCACCGCTTTAATGGCTCATTGCGGCCGCGGCGATGAGGCATTGGTCGGCGCCAAGGCCCACGCCTATTGGTACGAGGGCGGCGGCATGGCCGTGTTGGGCAGCATCCAGCCGCAGCCCGTCGCCCAGCACGCCGACGGCACCCTCGATTTAGCCCTCGCGGAAAAACTGGTAAAACCCGACGATGTCCACCACGGCGTCACCAAGTTGCTCTGTCTCGAAAATACCTGGTTCGGCCGCGTGATGCCGGAGGCTTATCCCGACCAGGCCCGTGCCTTTT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGCCCCTCGGGTCGTTGCGCGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.60,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 9492-10783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000029.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold27_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 9492 37 100.0 33 ..................................... AGTGGTACCTGTACGACGAACAGAACAAGCTGA 9562 37 100.0 32 ..................................... TTCGACCACAGTTGATCCCCTTTCGAGTTGTG 9631 37 100.0 33 ..................................... ATCCATGCTACACCCCCACCACCTGATTGACGA 9701 37 100.0 32 ..................................... CAAGCTACTGGAATTGAACCCGATGGTGGTTT 9770 37 100.0 32 ..................................... GGACGCTTACGTTATCCCGGTAAGCAGCGATG 9839 37 100.0 33 ..................................... TTAAACCTCGATAGACAAGGTGGTCCCGATCAC 9909 37 100.0 32 ..................................... ATCAGGAAAGGGCACCGACCTGATTACGGCTG 9978 37 100.0 32 ..................................... TCTGTTAGTCGACGAGGTTCTAATGCCTGGCA 10047 37 100.0 33 ..................................... CCGCGCCCTGAACCGGGATCGTTCCGTAAGGGG 10117 37 100.0 34 ..................................... GTAAAGCTCCTGCCCCATTGCATCCATTCGATCG 10188 37 100.0 32 ..................................... ATTGTCGAGTTGAAAAGGCGTTCGATTCGCCC 10257 37 100.0 32 ..................................... ATTGTCGAGTTGAAAAGGCGTTCGATTCGCCC 10326 37 100.0 34 ..................................... ATCCCAATGCAGTGGCGAAAGTATACGGCCCTGG 10397 37 100.0 34 ..................................... AGGCAATACGTGATTACGGGGGTACCTGGAAATT 10468 37 100.0 33 ..................................... TTTGATGTGTTCAAGGGCGGTTTTGTGGATTTC 10538 37 97.3 32 .................A................... ATCTACATCGATCCAGACGAGGTCGAAAACTG 10607 37 97.3 33 ......................A.............. GTGTCCCGAACCTTCGAAGCCGAGGCCCTGAAG 10677 37 91.9 33 ......................A........T....G GTTCGGCCGACCAACAGTGGGCTCTTTTTCGAA 10747 37 75.7 0 ...A....C....C.............C...A.CGCT | ========== ====== ====== ====== ===================================== ================================== ================== 19 37 98.0 33 GTCGCAACGGCCTTCGGGTCGTTGCGCGGATGGAAAC # Left flank : GTGGCGGCGCGGTCCACAACCTCGCGGTCTGGCAAAAAGACCGTACTCCGTTCCCGCGCCGGCGCGCCGCTTCGAATCCTGGCTGGTCGACCAAGTCGAAGGAAACAACCGCGAAGCCCTGCTCCATTTCCGAACCCACCCGGACGCGGCCTGGGCGCACCCAACCGACGAACACCTGCTCCCCATATTCGTGGCGATGGGCGCGGGCGGCCAAGGCCAAACCTACCACCGCGCTTTCCTCCACAACGGCCTGGCCATGACCGCCTTCGCATTCGCGGAACCAGGCACGGGGTTCAGGCGAAGGAACGAAGCCAAAAACCCGTCCGCGGATGTGAAGCAAACATAAAAACCCGGGACATCGGCGAATTTTGTAAGTGGTTTAAATTGAGCTGTTTGTGATAAACTAGCGAAAATTCGCTAGTTTTCAAAGGTGCCAAAAACAGACATCTGCGAAATCGGCCCCTTAACACCCTGGGAATAAGTGTGTTAAAAAGGCTGCA # Right flank : TGTTTTTTGGCGCAGGGCCGCCCGCGGCCCTGCAGGGATCACCCAGTTTGCAACTCTCGTTGGATGCCCCGACCCTTTGCCTTTTAGAAGGGTAGGGGGCCCTCTTTGAGGCGTTGCTGCAGGCGGTTCAAATACCAGCTATTCCCTTTTTTGAAGAAGGCCAACAACTTTTGGTGGGCTTCCGTTTCATTAAAGCCGCTCATGATCACGCTGACCTTGGTTTTGCCCGCGCCCACTTCTTCCAAGCGCAGGCTGGAAGGGATTTCCTTGAGCGTGTCCCCAAAGCCGGTATTGGCGGGGGATTGGATGTTGCGCGCGGTGTAATGCCAACCCGGCTTAAGCGCCGTGAATTGGACCTTGATGTTGTTGGGATCGTCGCGTTTGGCGTTGGCATCGTAGCTGGTTTCCATGATCCCACCCTCGCGCAAATCAACCCAGGCAACCGGCGTGATCCAACTTTCGATGCCCTCTTTCGACGTGAACAACCGCCACACCGCTTC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGGCCTTCGGGTCGTTGCGCGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 64172-63158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000029.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold27_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 64171 37 97.3 33 ...............................G..... GCGGGTTAAGATATCATCTTTAGATACCGCCAC 64101 37 97.3 33 ...............................G..... TTTCTCTACCCCACCGTGGATAACCCATAAGCA 64031 37 97.3 33 ...............................G..... ACACCATCCCAAGCTTTTGCGCTACGAGAACAA 63961 37 94.6 33 .......T.......................G..... CTCAAGGGAGCAACCTCCCTGGCCAAATATGCC 63891 37 94.6 33 .......T.......................G..... CTCAAGGGAGCAACCTCCCTGGCCAAATATGAC 63821 37 94.6 32 .......T.......................G..... CCCCAACAACCACCTCACCCTTAGCCTGGCGG 63752 37 94.6 33 .......T.......................G..... TTAAACATGTAGACTCCCGCGTGGTCTGATGCC 63682 37 97.3 32 .......T............................. AACGCCGCCATGACCGGAACGGCGACCGCATC 63613 37 100.0 33 ..................................... GCAGCTTGGGCTTGACCTCACCGCGTCCGTGGA 63543 37 100.0 32 ..................................... TTGGCGCGGATAAGTTGGCGTTGCTCTCTCAT 63474 37 100.0 33 ..................................... TCAAGGGCGAGAGCCTCCTGAGCCGCGCCAATT 63404 37 100.0 33 ..................................... TCCAAGCTCGAAAGTTTGTGGTCATGTTAACCC 63334 37 100.0 34 ..................................... CGCAATCGTAGCTCGCGGGCAATGTGAAGCAAGT 63263 37 83.8 32 .C.................T....T...A..G..G.. ACTTAACCCGAATCCGTGCCCGTCTTCGCGCG 63194 37 70.3 0 ...A....A...A......T..GA.C..T..C...CA | ========== ====== ====== ====== ===================================== ================================== ================== 15 37 94.8 33 GTCGCAACGGCCCTCGGGTCGTTGCGCGGATTGAAAG # Left flank : TGGCCAAAGTGTTGATCGAGGTACCAAAACCCGCGTTCGGCGGGGTCCCAGTGGGCCCGCATGGCGACGCCGGCCACTTTGTCGCGGACGGCGGGCAGGCTGAGGGCCCGGGCGCGATCGAAGTCGGGCGCCTCTATTTGCCAGGCCGCTGCAAAACTCAACCAAACCCAAAGCACCGAGGAAACCACCATGGTCCCGCCTCCTAAAAGAAAACGATTTCGTCGCCAACTAATATATCAACAAAATACACAGGCCGTCATCAGCTTTCCAAATCGGGAAGAAACAAAATGGAGTTAGAACGGGAAATAAGCGCCAAAGGTGGTCCGCGGACCTAAAGCGAACATAAAAACCCGGGACATCGGCGGATTTTGTAACCCAAATATTTAAAGCCAGTTACAGAAGATCAGCGAAAATTCGCAAGAAAATAAAGGCGACAAAAACAGACATCTGCGAAATCGCCCCCTGAACACACTGGGAATAAGTATGTTAAAACGGCTGCA # Right flank : ACAGCCGAAAATCATTCTTTATCAAAGTACTCGGCCCAAACAGCGGACCCACCCACGAAACCCACATTTCGCTTCAATGCGCCGATGTTCCCCTTCAGGCCACACGGGGCGCTCTACCCTATGCACCTGATTTTATTTAGATTGCAAAATCTCACACACGAAAAAGAATAAAAAAACCACACCAGGTGAGCCGAAACCCGCGGCGTTTACGAAATACAAAGTAGGCGAACACCACTTTTATCTTATTTCCTTAAACGGGAGGTTTCCCTCAATGAGCCATTTTCTGGAAGAAGTCGACCTGGTACGCAATCCTGAGCCACGCATCCCCTGTGTGTTGCTGCTGGATACATCCGGTTCCATGATTGAAGACGACAACATTCACGCGCTAAATGAAGGCGTACAACACATGATCGACGACATCAAGGCCGATTCCTTGACGCGCAAACGCGTTGAATTGGCGATTGTCACTTTTGGCGGCCGCGCCATCGTGCGCCACGATT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGGCCCTCGGGTCGTTGCGCGGATTGAAAG # Alternate repeat : GTCGCAATGGCCCTCGGGTCGTTGCGCGGATGGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 12985-14411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000041.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold38_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 12985 37 100.0 32 ..................................... ATCCTCTGGGCGCGGTAATGCATGTAGCTGAC 13054 37 100.0 33 ..................................... TCGCCGGTACCGGGGCAGATGAGCATCAACACA 13124 37 100.0 31 ..................................... CATTTTCCCGTGGGTGTCGCAGTTCGACGGG 13192 37 100.0 33 ..................................... TTCGTTAATGCGCTTCAAAAGATCATCGGCGAG 13262 37 100.0 33 ..................................... GTAGAGGGCTAGCCGATTAGCTCGGCTAGGCAA 13332 37 100.0 32 ..................................... GATGCTATCAAAGTAGATGCCTTGTTTGAACA 13401 37 100.0 33 ..................................... TACCTCAGTTCGAGATAACACGTCCCGCGGAAT 13471 37 100.0 32 ..................................... TGGGAAAAGGCCGACGCCACGCCACACAGCCG 13540 37 100.0 32 ..................................... ACGCCCGGCATCTCCTCGGCTTTAGCCCAAAC 13609 37 100.0 32 ..................................... TCGCCGGTAAAATCGGCGAGGCCTGCCTTGAT 13678 37 100.0 33 ..................................... ATCACCACGGAGTCGCCGGCCGAGGTGTACAAA 13748 37 100.0 34 ..................................... ATCGTGGTCTTACCGGTAACAGACGGGTTGCTAC 13819 37 100.0 32 ..................................... AGTCCTCGCCGCCATTCACGGCCGCCGGGAAA 13888 37 100.0 32 ..................................... AGTCCTCGCCGCCATTCACGGCCGCCGGGAAA 13957 37 100.0 34 ..................................... TCGTGAGTCTCGATGTTCATCATTGGGCCAACTC 14028 37 100.0 32 ..................................... GTCTGGGTCGCCCGGATCAATAGGGCCACCAC 14097 37 97.3 32 ..............A...................... GTCTCCACCGGTTCCGGCCTGTTCGATGACCA 14166 37 97.3 33 ..............A...................... TTGCGTGTTATCCAACACGCAAAACACACCGTA 14236 37 97.3 32 ..............A...................... GCTGTATACCGCGCGGCATATCTCGATGGCGC 14305 37 97.3 33 ..............A...................... AGAAAAGTCCGAGAAGAGGACCCAAGCAAACTG 14375 37 91.9 0 ...T............................TC... | ========== ====== ====== ====== ===================================== ================================== ================== 21 37 99.1 33 GTCGCAACGGCCTACGGGTCGTTGCGCGGATGGAAAC # Left flank : CTTTTTGGCGGGCGACGGGCGCGGCGGTATCGCGGGCGCGGCTTAAATCGCTGGCAAAAATCGCGTCATAGGTAGTATTCGCTAGTTTGAGGGCCAGCGCCTCGGCCTGATCGCGGCCAACCTGGTTGAGTTCGATATCGGTTTGGCCTTGGATGCGGCCCTCGGCATTCCAAGCTGTTTCCCCATGGCGCACCAAATAAATCTGACAAGCTTCCATCATCGCCTCCCCGTGTTGCGGGCCCATCATACATCAAGGCGCCGGCAAAGTGGGTTGCTGGTTGTACCCTGTGATACCAAGCCGGGTTTGGGCAAAAAATAGGCGCCCGCCGACCCCAAGCGAACATAAAAACCCGGGACTTCGGCGGATTTTATAAGTCAAATGATTTGAGTAGGTTAGTGAAAGCTAGCGAAAATTCGCAAGATTTCAAAGGTGCCAAAAACAGACATCTGCGAAATCGGCCTCTTAACATACTGGGAATAAGTGTGTTAAAAAGGCTGCA # Right flank : CGCGGACCTGGTTGTTTTAGTGCATCCATAGTGCGTCGCAACAGCCAACGGGTCGTTGCGCTTCGTGATCGCGGCCTAAAGCAGGGGTTGGCGGCTTTTGGTGACGGTTTCGATGGCTGTTTGGATCGCCAGCACGTTTTGGTCGTATTTGTTGCCGCCGTTGAGCTTCGTGGCGGTGTCGAGCATTTCGCCCAACACTTCCAGCGCCTTGTCGTGGTGGAACTTGTTGTCGGTGCCGTCCACCAAGGTGGCGATGCTTTCCGCGTGCTCCTGTAACGCTTTCATTTTGTTACCGTCCGACTTGCCCGAAAGTTCCAAAAACGCCGTCGTGTTGCTCAGGTACTCCAGCCGTTTGGGGACCGGCATCTCGGTTTTTAAGAGTTCCGTCATGTTGCTCAGGGCGCGATTGGCCGTGGTTTTGGCCAATGAAGGATCGTTGGTGTTTTGGGCCAACGCCAACTGAAAACGGGGGAGCTGCTGACGGGCGAACAGTTTGGCCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGGCCTACGGGTCGTTGCGCGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 71625-72385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000046.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold43_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71625 29 100.0 32 ............................. GGCGTCGGCGGCCTGTTTGGTAATGGTGGAAT 71686 29 96.6 32 ............................C CACACCCATGCGGCCTTCACCGTTCCAAGCCC 71747 29 100.0 32 ............................. TTTATTCCCTTCTTCCTGTCCATTATTTTTCT 71808 29 100.0 32 ............................. GCCTATTTCAGGGCCCTCTAGGCGAAATGCTT 71869 29 100.0 32 ............................. CTCTACGTCTCTCACGAGACCGGCGCCAACCT 71930 29 100.0 32 ............................. GCGACAACGCATGAACGAAGCATTCACCATCA 71991 29 100.0 32 ............................. TTCAAGCGGGCGAGATCTTTACGCATTTTGAC 72052 29 96.6 32 ..........C.................. ATTGTTCCGGGGTTTTGCTTTCCGTTTCTCGG 72113 29 100.0 32 ............................. ATACCTGAATCGGTAACCCAAAATCCGTTATG 72174 29 100.0 32 ............................. ATGACATTGGCCATGTCCAGCAGGGGCGGGCG 72235 29 96.6 32 ....G........................ ACGAGGTGAAGCAGCTTAACCGGGAACTCAAG 72296 29 100.0 32 ............................. GGTATGTTAGCCGTCATTGCACCACGCAACGA 72357 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 CTGTTCCCCGGACGCCCGGGGATGAACCG # Left flank : CCCGCGCGGTGCAGGCTTACGCGCGCCCTCCCGCGCGGTGCCGGACTTACGCGAGCCGCTCCAAGCGACCAACCCAAAAACGAAGACAACCCTGTCCAAAAAGGCCGAGCGAAACCAAGGTGACAGGGAACCCAATCCAATCTAGAATCAAGAAAAAACCACAAAACACCAAGGCAAAAAGACGACAGAACAACGACCAACCAGAGTCACCCAACCCAATCAAAATGATCGACCTAAAAAACCGCCACCATCCAGAACACCTCACAAACCCATACAATTCCAAATGCTTGCAAAGAAGCTCTGGTAAAACGGCATTTTGCCTAAAACCACCGTTTTCGTCTCCACATCAAGCGACAGAAAAATCCACCTAAAAACCTTTTGATTAAAAGACTTAACCAAAACCCGCCAACACCAAAGAAAAAACATGAAAAACCTAAGCAAAATCGGTACACTTTTCCAACTCTTCCAAATCCCGAAACTATCGTGTAAATTTACTTAGT # Right flank : CCTTGAAGAACAGTTCGGAACCACGATTCCAACTGTTCCCCGGACGCCTGTATTTGGCAAGCAAAAAGGGACCCACCTCGATCACCGAAAAGGGACCCACCGTTTTTGTGGGTACACGGATTCCCGGCTCTCTCAGCTTGAGGTGAAGAGCCTTTGGTTGATGGTGGTGTTTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGGACGCCCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.60,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63-439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000051.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold48_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 63 31 100.0 39 ............................... CCCTAAAACTAAACTTTACGCTTCAGCAAGCGGGTTTCC 133 31 100.0 38 ............................... TTCGCCAGATTATCTTTAAAGAGATTGAAAAAGTTTCC 202 31 100.0 38 ............................... CCGACCGCGAAAGCATTAGAAATACGGCTCTTGTTTCA 271 31 93.5 38 ..................A..C......... CGCCTGAAAAGGTCCGCCCCGACAACGGCGGTGTTTCA 340 31 93.5 38 ..................A..C......... GGCACAGTGCAGAGTTTGTGCAATTAATAAGCGTTTCA 409 31 93.5 0 ..................A..C......... | ========== ====== ====== ====== =============================== ======================================= ================== 6 31 96.8 38 ATCCGCGCAACGACCCGAGGGGCGTTGCGAC # Left flank : AACGACCCGAGGGGCGTTGCGACCTATTGTAGGCGAAGACGGCGTAACCGAACTTAGTTTCCA # Right flank : CTGCAGCCTTTTTAACATACTTATTCCCAGGGTGTTAAGGGGCCGATTTCGCAGATGTCTGTTTTTGGCACCTTTGAAAACTAGCGAATTTTCGCTAATTCATCGCAACCAGCTCAATTTAAACCGCTTACAAAATCCGCCGATGTCCCGGGATTTTATGTTTGCTTGGCATCCGCGGACTGGGTTTTAGACCGCAACGCCATCGACCAAAATTAGGACACCCTGCTCGCGCCCCGCGGTCAAGTCGCGGACCACACTCGAAAATCAATCATAAACCCGACGCACAATCCAGGCAAAACCCAGCCATGCACCTTTCAAACATTCCGCGCCTTTCCTCCAAGTTCGACAACCTTGGTTACCGACACGAAAAAGGGTCTTTGTTGGCAGTCAACTCAAACTTTGCGGTTAGCGGGCGCGACGGTTCCTTGGGAACCTGGTTTAGGCAATTCGGAGCGCGCGCATCTCGGAGAAAAAAGGCAGCGACGCGCTCACCTTGTTCC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCGCAACGACCCGAGGGGCGTTGCGAC # Alternate repeat : ATCCGCGCAACGACCCGAAGGCCGTTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.40,-6.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 19482-20731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000055.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold52_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19482 29 100.0 32 ............................. GTCCTCGCGGTCGACGGGCCACCTCACGGCAG 19543 29 100.0 32 ............................. ACGATGTCCCAACCGTCGCCGTACTCGGCCAC 19604 29 96.6 33 ......................G...... ACTTGGCGAGTAGTTCATGATATCCACCCGGGG 19666 29 96.6 32 .................A........... GTGTCTGTCACCTGTACCGCCTGTAATGGCGA 19727 29 100.0 32 ............................. CAATGGTGGGGTATCAGAAGCCCTTCGCTGGG 19788 29 100.0 32 ............................. CATCTGGCCTGCGTAGCCGACCGTGGATTGCA 19849 29 100.0 32 ............................. AGGTCTCGGTGATTGGCATATTTCTAACGTTG 19910 29 100.0 32 ............................. TGAGTGCCAGTCCGAGGGTTGTGGAAGATGAA 19971 29 96.6 32 .A........................... GTAAAAAACGGGGCCATCGTCCTGATCCATCC 20032 29 96.6 32 .................C........... GTACGCCGCGAGGAATGTATGTCCTTGCTGGG 20093 29 96.6 32 ............T................ CCGGCGCAACTGTTCCTTGTGGGCCTCCGCGC 20154 29 96.6 32 .........................T... TCCAAACACTCGTTGATGAGGTTCATTAACGG 20215 29 100.0 32 ............................. GCTCTCATGCGCGTCAACGATGCCCCTTTGCG 20276 29 93.1 32 ..........C.................C CTTCGGTAAAAAAGCACCCGAGGTTATCGAGC 20337 29 96.6 32 .....................G....... ACACCTCGGGGATTGTCAATCTCTCGCGCTAC 20398 29 96.6 32 .........................T... AATGCGAGCCTTTTTGGTTCGATCTCGACGGA 20459 29 96.6 32 .......................C..... TTCGTGGTGGACCATGACAGCTCTGTTCTGAC 20520 29 100.0 32 ............................. GCGCGATGGTCAAGTCCGGCGATGCGCGGTTG 20581 29 100.0 32 ............................. CACCATGTTTCGGTATGCGTCATCACCCAAAT 20642 29 96.6 32 .........................T... ACCCATTCGATTGCCTCGGATATGTCGCCGCC 20703 29 86.2 0 ........A..C..G......G....... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.4 32 CTGTTCCCCGGACGCCCGGGGATGAACCG # Left flank : CGAACAGGGATTCTCATTCGAAACATGCGGTCGCAACCGCCGCATTCCGGTCGATTTCGACGGAATTAAGCTGGTATCCTTTTTCCCAGAGGGCGACGAAGCGGAAGAGAACAACGATGACTACGACGATGAAATCCCGTTCTAAAGACCCAATCAAGACCTAATAATCCAACAATATAACCGCTGACAGACACAAAGAAAGAGTCAACCAACTCAATCAAAATGATCAAGTAAAAAAAGTGCTAAAGTCGTCACCAAGCAACAAAACATTATAAGCCAGAGCCTTACAGAAAGGTTCTGGTAAAACGGTATTTCTCCAGTTTTTCACCTTTTCGTCTCATCCCAGCGAGACACCCCCCATCAATACACAAGCATCTAAATTAAATAAGGTTACAAAGCCAACCAAAACAAGAATAAGTAAAATAAAGGCATCTAATGCAAAATCGGTACACTTTTAAATTATTTACAAGTATCGAATTTATAGTGTAAATTCTCTTAGT # Right flank : GGCCGGCCTGGGGGACCATTTGTCGCAAAGAACTGTTCCCCGGAAGGCTTAAACTTTTGTGTATTCTGAGTCAAACAAACGCCTGGCGTTTGGTGCCACCCACCTACCGCCCTTCTGAGTTCCCTTCATGCCACAGAAAAGCGCCACCGATCACCACCACCCCGCACCCCTTACCGGCCGAATCGCTTGGTTGAGGCTGCTTGGGCTGATACTCCTCGCCACTTGCGGCGCCCGGGATCGCCACGCGTTCCTCGGCTCCGGCCGACCCACCCCTGAGGCCGCCTGGGTTACCTGGGTCGACGCCGTGGCCACCCAGGATTACCACCTCGTGCGCCAAGTGGTGCGTTATTCCGGGCCGGAATGCGGCGGCATGGAAATGATCGCGCTTAACCCGCACGATCCCAGTGCCATTTCCCGCTACCTGGCCGACCACATCGACCACGCCCCCCAATCCATGGGCAACGTCGACGGCCCCCTCTACCACCACCAACAGCGCGACA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGGACGCCCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.60,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34593-34199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000057.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold54_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34592 28 82.8 32 GC...A..A.-.................. CTTTAATTCGCCTCTCGATTGTGACTTGAGCC 34532 29 100.0 32 ............................. ACAGGTGTCATCGCCTGCCACTCGGCACCGGG 34471 29 93.1 32 ..............T............G. TTGTATCAAAGGGCATTCTTAAACGGCTGGAA 34410 29 96.6 32 .........A................... CCGCAATAGAGGTCACGCGCCACAACCACGCG 34349 29 93.1 32 ..........C.....T............ TCGTGGAAGGGTTGGCCGGTTTCTGGCGGGAT 34288 29 93.1 32 .........A..................T TTTATGCCGGTCCCGTGTCCAAGGGTGCTGCC 34227 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 CTGTTCCCCGGACGCCCGGGGATGAACCG # Left flank : TCACTCCAGATCTGCCTCCTTCAGCTTTTTTCCGATATGCCAAAGAAAGCAGATTTTCGGTTAGCGTGGGTCCCTTTTCGTTTGTCGTTACCCCTTTTGGTGGGTCCCTTTTAGCTT # Right flank : ATCTCACAAAACACATGCGGTGCCAGTCTTCTGCAAACAATTTAATTTAGGCAACTTGGCCCATTCGCTTACATGATCGGGCACGTACATTCAAAACGCCGTGGACCGCAAGCAGAAGTCCCGCGCGGTGCCAACTTTTCCGCTCAGCGCAATCAAAGGTTCCGTTTCGCTCTTTTCACACGGAGTCCAAAAAAATTAGCCAAGTTGCTCGGGTTCAGAAAGTGTGCCCTTGGTTAGCAAGGCCAAACCCGCCATGGCACTTTTGATCTTGGTTTCGCCACCCACCGCTTCCAACAAAACGCACCCTTCAACCGTCGCCAATGCCAAACCGGCAAGCGGCTCGCGAAAGGCGGGGTCTTCAACGCGAAGGTTGTTGCTGACCCACTGGTAGAAACTCGTCATGATCTCGCTTGCAACCGTTGTCATGGTGGTCTCGCCGGCTGAAGCCCGCGCGGTAATTTCGAGCCAAAGCCGGGTAAACGGCTGAATCCTAGGATCGG # Questionable array : NO Score: 3.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGGACGCCCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4650-4195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000050.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold47_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 4649 37 100.0 32 ..................................... CGCAGCGACTTAGGTTTATTTGTGTTTTTTTT 4580 37 100.0 34 ..................................... ATCTGATGCAATCCGCCACCATTCCTCTTTTAAA 4509 37 100.0 32 ..................................... ACATCGCCCTCCTGTAATGCCATGCCGCCACC 4440 37 100.0 32 ..................................... AATGTCGTCAAGTAGGGCACCATGAGATTCGC 4371 37 100.0 33 ..................................... ACCAACGCGGGCGCTGTTGATGGCTAAAAAAGT 4301 37 100.0 33 ..................................... GAACGAAATAAGGGAAGACGGCGTTGCCCCATG 4231 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 7 37 100.0 33 GTCGCAACGGCCTCCGAGCCGTTGCGCGGATTGAAAG # Left flank : TGTTCGGGGGGCGCTCGCTCGAGGGTTCATGTCCCTTCCCGGCCGGTTAGGGTGAAGGGTTCGCCGCGCGCCAGGGTACAGGTCGCGCGGCGAGACCTGAAGGAAGCCGAGGGCGGAACGCTGATCCGACGTACCGGAATCGTATCAGGCGGTGGCATGATGTGCTTGAGGGCTGGGTCGCGGATGTTTACCGCAACGGTGCGTTGGGTGCCGTCCGCGGCGGGGGTCCTGGTTATGGTCAGGGGTGCCCATGCCGTGTCGATGAGCACCTCGGGCGGCGGAAAGGTGGGCGGTTGCGACCGGGAAGGGGCCAAAGAGCGAATCCGCCGACCCCAAATGAACATAAAAACCCGGGACTTCGGCGGATTTTGTAAGCTGTTTTATTTGAGTTGGTTACGGGAAGTTAGCGAAAATTCGCTAATCTGTAAAGGTGCAAGAAACAGACATCTGCGAAATCGACCTCTTAACACGCTGGGAATAAGTATGTTAAAACGTCTAGA # Right flank : TTGCCATGACCGGTGTAGTGGGAGTCGCCCTTCCAATCTCACCCGTTTCCCAGCGGTGTTCGCGTCGCGCTCCCGTTGCTTGGCCCGCTTCTTTACCCGGCCGCGTAACGTGGGAAGCGCAGCGTGACGCGGGTGCCTTCGCCCAAAGTGCTTTCGAAGCTGAGTTTGGCGCCGACCGAGGCCAGCGCGTTGCAGGCGTAGTGCAGGCCGAACCCGTGGCGGCCTTTGGTGGAGAAACCCAGCTTGCACACGGCGTCGAGGTGCTCGGGCGCCACGCCGCGGCCGTTGTCTTCAACGGTCAGTTGCGTACCGTCCTCGGTTCGGGTCATGCGGATGGTGAGGCGCGCTTGTTCCGTTGCGATCAGCGCATCCAGCGCATTTTCAATGAGGTAGGCCATGGCGCGTTTGATGGTGTAGGTGGGCAGGTTTTCCTGGTTGCTGTCCGCATAGTGGGTTGCCACGGTGACGGGGATCGCTTCAATCCGCGTCGAGAACAAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGGCCTCCGAGCCGTTGCGCGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 2 13874-12233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000050.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold47_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 13873 37 100.0 32 ..................................... GCGTTCGCGCTCGACACGCTCCCAGCCAGAGA 13804 37 100.0 33 ..................................... AGTTTGCCAAGGCTGAAATCATGACCACGGTGA 13734 37 100.0 34 ..................................... CTAAAGCAGGACACAGTTCAAGCTGACCGCTACC 13663 37 100.0 33 ..................................... TTCCAGGTCTTGACCGTACTCACACCGCGAACC 13593 37 100.0 32 ..................................... CGATTGTCGAGATTATGCCGTATTGCCCCTTT 13524 37 100.0 33 ..................................... CCATAGCCTTGGGGTTCTTGCTGCCGCAACAGC 13454 37 100.0 33 ..................................... TCTGGTACGTCACCGCCGAGGAGTGCCACGAAG 13384 37 100.0 32 ..................................... GTTAACCCGGCCAAAGGTGGCGGGTTGATTTC 13315 37 100.0 34 ..................................... TGGCCTGGCTACTTAAAGACAACAAAATCGCGCT 13244 37 100.0 32 ..................................... ATCGTCATCACCTCCGGGGATTGTAAATGTTC 13175 37 100.0 33 ..................................... GTGTTGGATAACACGGAAAAAACACCGTATTTT 13105 37 100.0 33 ..................................... CCCAATTTAGGGGGGTGAATCGTGGCATCGAAA 13035 37 100.0 32 ..................................... TTTAACCCCGAGAATGTTTTCGCTCGGGAAAG 12966 37 100.0 33 ..................................... CAGCGTGGGACCGCACTACCACCGGTGCGGTAT 12896 37 100.0 33 ..................................... GCACGCTGCAAGGGCGCGGTTACAGAATTACAG 12826 37 100.0 34 ..................................... TTTGTATAACTCAGCTTGTAGCGGCGGCAAGTTA 12755 37 100.0 31 ..................................... CAGCCGATCCGCGAATACGCCGCGGGGGTCT 12687 37 100.0 32 ..................................... CGACCCTGGGCCAAACTGGCGAATCATATGGA 12618 37 100.0 33 ..................................... CCGTGGGTGTCGCGACGGGCGATGCTCCAAACC 12548 37 100.0 34 ..................................... AAAACTGGACCTCGCGTCATATCCGCGCGGGTGG 12477 37 100.0 32 ..................................... GGTGCAATTGGGCGACGTTATCGCTCTCTTGA 12408 37 100.0 33 ..................................... CAACAGCGGATGGTCCGCTTGTAGATCTCCCGT 12338 37 100.0 32 ..................................... CCAACAAAACCATTGAGTTCGTAAGTAACCCC 12269 37 91.9 0 ....G..........................T....G | ========== ====== ====== ====== ===================================== ================================== ================== 24 37 99.7 33 GTCGCAACGGCCTCAGGGTCGTTGCGCGGATGGAAAC # Left flank : CGCGTTAACCCGCGCTTTCCGTGGGGATTGGCGACAAAGCCGGTCGTGGGTTGTCGGCGGTGGGCCGGGTGCCGAGGCCGGCGTGTTGCTGCAACCGTCGGCCACGGACCCTGCCCGAGATGCGGCGGTGGGCTGAAGCGCCTCGCCGCATCGGGTGGTGCAAACCATCCGGGTGCGGGGTAGGTGTTCATGAGGTCTGGGTGCGTTGGGCGGTTGGCGCGAAGTTGCGCGAATGGTAGCAAGACGGCGAAACACGGGCGTCGGCAGCGGCGGATGCGCAACAGGTTGTCCGAAGGCGACTGAGAAAGGGGCGAAACAGGAGTCCGCCGACCCCAAGCGAACATAAAAACCGGGGACTTCGGCGGATTTCATAAGTGTATTAATTATAGCTGTTTATAGGAAGTCAGCGAAAATTCGCTATTTTTAAAAGGTGCCAAAAACAGACATCTGCGAAATCGGCCCCTTAACACCCTGGGAATAAGTGTGTTAAAAAGGCTGCA # Right flank : AGGGTAATCGGTTGGAACGGTAAATTACGAGCGTCGCAACGGCCTCGGCTCCTGGCATGAGCCATTTCAGCGAGAAAGTTTGCTTGAGGGTTCAGAAAGCGCTTTTTGCATGGAAATTTCCAAAAGTTCAGAGAAAACGTCAAAGGGAGTGAACCATGACGCCTTTTGTGTTCTGTCTTTTGTTAACAACCTTAATGAGCGAACCCATGGTTGGCGCCGATGCTTCCCAAAGCATCGCATCCTCCGAAATCACCGTGCCCTCCGGCGCGCTTGATTCGGAACTCGCCCCAACCACCCAGACTGACCTTAACCGTGAAAATAAATCCCATCCCCCGCTGCTTGTCTCCGCTTCCGCGGTGCGGAGTGGCGGCGTCTGGCGGCTGGTGTACTCCACCACCACGGCCACCGTGCAAGGGGGCTGCGCGCCCTACAGCTACCAATGGCGTGCCGGTCCCTATGTGGTTCCCGATAGAGGGCTTACCGGTGCTCAGGCGCGGTTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGGCCTCAGGGTCGTTGCGCGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 46443-45081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000050.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold47_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 46442 37 100.0 32 ..................................... AATGAGCCACCGCAGAAACGCCAGACCATGAG 46373 37 100.0 33 ..................................... TTAAAGAGGACGCGCCAAAGCAAGAGATCGAAA 46303 37 100.0 32 ..................................... GACATTGGTGGCGATTTTGACGGCTGACACGT 46234 37 100.0 33 ..................................... CATACCGACGTTTATAACCGACTTTTCGAGCTG 46164 37 100.0 33 ..................................... ACACGGTCCGCGAGGCTGTTGATGTGGGGAGGT 46094 37 100.0 33 ..................................... CGGCAACTTCCGGCGATCCTACAACCATGGAAA 46024 37 81.1 33 ..................A...G.A......T.C.CT CCACGGTCCGCGAGGCTGTTGATGTGGGGAGGT 45954 37 100.0 33 ..................................... CGGCAACTTCCGGCGATCCTAAACCACTGGAAA 45884 37 100.0 32 ..................................... TGGCCAATCCTTGGGTTCTGCGCGATCGTCCC 45815 37 100.0 34 ..................................... CGTTATGATGAGATGGCGTGCTGGGTGGGTTGAG 45744 37 100.0 32 ..................................... AAAACCTCGCAAGCCGATCTAGCGGCTCAAGC 45675 37 100.0 32 ..................................... TTGGTTCAGGAAGCCACCGGCGGCAAACTTTT 45606 37 100.0 32 ..................................... AATGTGCTTATACGCCTCCGAATTCAGCGTAT 45537 37 100.0 35 ..................................... AACGGTATCGCCGGATCGAAACGCCACGTTGTTGA 45465 37 100.0 32 ..................................... ACTGAAAAGATGTACCGCAAAATCCGGGGCCG 45396 37 100.0 33 ..................................... CTGTTCCATTAGGTCGCCGATACTGTCTTGGAT 45326 37 100.0 33 ..................................... CCCAAATGTCTCGTACATGGGGACATCACTATT 45256 36 94.6 33 .................T.-................. AGGTTCGAGGAAGGCGAAGCCAACGGCTTGACC 45187 37 97.3 33 ...A................................. AAGAGCATCGGGATTGTGGGTCAGGATGTGACC 45117 37 83.8 0 .......G..T......................GGCT | ========== ====== ====== ====== ===================================== =================================== ================== 20 37 97.8 33 GTCGCAACGGCCCTCGGGTCGTTGCGCGGATGGAAAC # Left flank : GTCCAGCGGGTGCCCGGTTTGAGGTGCGCGGGCTGCGCGCTGAGAAGAAGGTTAGAAAAAAGCAAAAAGAACAAACTGGTTCGATAAATAAGGTGCATGTGCATCGCCTTTAATAAAGATGGATGGCGGTAAAGTGCAATTGAAGAGAGCGATGCGGTGAAAGAAGCGGGCGAAAAGCGGTGAGCGACCGCGGGGCGGATGTTTTGGGCCCGCATCCAGGTATTCAAGCATGAAGCGCGGGGCGGCGAAAACAAAAAGGGGAGAGGTGTTTGTTAATTTTTGATGAGGTGCAACGGGGTGGGTTGCGAAGCGATCCGGGCGAGCCGCGGACCTATAGCGAACATAAAAACCCGGGACTTCGGCGGGTTTTGTAAGATGTTTGTTTCGAGTTGTTTGCGAGAAGTCAGCGAATATTCGCAAGTTTAGAGAAGGCTCAAAAACAGACATCTGCGGAAATGGCCTCTTAACATACTGGGAATAAGTGTGTTAAAACGGCTGCA # Right flank : TTCCGCCCTTGACCCTTCCATCCAAGGCCGCAATCCACGTCAGCACGAAGATTACTGCCCAAAAGCGCCTTCGCCGCCGCAGCGCCGCGGCGAAGGCTGCGCGACCAAGTAAGCGAAACAATCGCATGGCTTTCGGCTTCGTAGCAGAATTCCTTGCTTGAACCGGGGGCTAAGTGGGGAATGCGACCAGGTCGCCAATGGCGACGTACAGCTTTCGTTTGCCCCGGTAGGGATTTCGTCCGTGGGCCACCGCCGTGTTGTCGAGCACCATGACATCGCCCGGCTCCCAAGCGAAGGACTGTTCCAGTTCGGCGTACACTGCCAAAATTTCCGCCATGACGGCGTCTTCGATCCGGCTGCCGTCGCCGTAACGGCAATCGCGGGGGAATTGGTCGGGCGGCACCACATCCGCGAGCGCCTCGCGCAAATACTCGGATAAACAGGACGGGTGCCAATGTTGCGCTTGGTTGACCCAGGTCGCCATCCCCGTTTGCGGATGG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGGCCCTCGGGTCGTTGCGCGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 4 49643-48491 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000050.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold47_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 49642 37 100.0 32 ..................................... ACACCGGCAGGCCGGAAATAGAGGATCGAACC 49573 37 100.0 32 ..................................... TGATGTTGATATCGTGGGGGTTGATCTCGATA 49504 37 100.0 33 ..................................... CGTGTCATGGTTACGCCTCCACACTGTTTGGCG 49434 37 100.0 33 ..................................... ATCGGAGATGCCGAACTGCTGCCGCTGCCGGCT 49364 37 100.0 33 ..................................... GATTAATACGTTTTCGCTGCTCTCGACTTGGCT 49294 37 100.0 33 ..................................... GCCAAGGCGACACAGCAAGCGGCATTATATCCG 49224 37 100.0 33 ..................................... ATCCCAATGCAGTGGCGAAAGTATACGGACCCG 49154 37 100.0 33 ..................................... ACCCCAAACGTTATTTTGTTGCCCCGTGCGGTC 49084 37 97.3 33 ............C........................ ACCGACACGCATTCCCGTTGTCATCAGGACGTG 49014 37 97.3 32 ............C........................ ATTCCAACCGCTGGTGGCTGACCGATTTTTAT 48945 37 97.3 33 ............C........................ AGAAGACTCGCCACACGGTCGGGTATGAATGCA 48875 37 97.3 32 ............C........................ CAATTGCCGTGGGTAGGTGATGTCCAAATCTC 48806 37 100.0 33 ..................................... TCGGGCCCTGCCACCGAACACCCAGCGCTCGCG 48736 37 91.9 33 ............CTC...................... CTCATACAAAAGCTGGTGAAGGCTCACCATAAA 48666 37 91.9 33 ............C..A.......A............. TGGTAGGTCGCCTGGTAAACAGCGATCCATCGA 48596 37 91.9 32 ............G................C......A ACCGCACTCACGTCGGGCGGGCAATACACGTC 48527 37 70.3 0 ............C.C...CT.CC........CTCTC. | ========== ====== ====== ====== ===================================== ================================= ================== 17 37 96.2 33 GTCGCAACGGCCTCAGGGTCGTTGCGCGGATGGAAAC # Left flank : GGTGAACCTATTCGTCTTTCCAACTAGCAGGTCGTCTTTTCGAGGCCATATGTGCTTGCCCCAAACTGGGAGATTGGTGATTCCTGCCGCCCAGGCTCCCTCGAAGCTCTTTTCCTTAGGCCTTTGTCCAGACCAAGCCCTTTTGGTAAAATTGCCCTTGCTGGAAGGTTAAGAGACCCCAAGCGATGCCGCTGCTTTCTTTGTAAATTGTGGCCGAATTAAGTAAAGAATATGTAAAGATCATTTGGATGTCGCCCATGTGTCGCTATGCGAAAATCTCTTCTTGCTAAGCGTATAAAATGGAGAGACTTAGATTGTTCTCTCTGCACCTGCCAAGCGAACATAAAAACCCGGGACTTCGGCGGATTTAATAAGATGATTGTTTTGAGCTGGTTGCGATAATCCAGCGAATATTCGCAAGAATGCCAAGGCAACAAAAACAGACATCTGCGAAAATGGCCTCTTAACATACTGGGAATAAGTGTGTTAAAACGGCTGCA # Right flank : ACCACCCGGCGACCGGGTTAGTTGCGGCTTAGTTGGGTTTCCTCAAATGCGGCGTGGCGGGCTTCGGCGGCTTTGACCAGGGTCATCTGCACCAGCCGCGCCCACCAGGTGCCCAGCGCACTTTCGTGGAATTCGACCCACGGGCGCAGCTCGGCCTCGGGTACCGCGCGCCATTGGTAGATCAATTGGCGGAACAGGCCTTTTTCGGCGAGTGATCGGAACTCGGCATCGCGCAACAGGGCCGCCAACATATACCGGACCGCGTTTTCCTGCTGCTTGGGTCGCTTGCGGTTCGCGATCAGGCTCGCGTTGCTCAGCACAGACTGTCGGTACGCGGCGAAGTGGTGGTTGGCCCAGTCAACCCGCTGCCCGGCCAACAAACGCCGCATCAAAAATATGTGTTTTTGCGCATCGGGCACCGTATCGAAAAGGTCCCGAATACCCTGGTCCAAGGTGGCCTCGTCGACGGGTTGGTAATTGCGTACCACCGCGGCGGCGGG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGGCCTCAGGGTCGTTGCGCGGATGGAAAC # Alternate repeat : GTCGCAACGGCCCCAGGGTCGTTGCGCGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 240317-240989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000016.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 240317 35 100.0 34 ................................... TATCTTTTATGTTTAATACCGAATGGCGTTCCAT 240386 35 100.0 35 ................................... TTTAACTAGTTTTCGTTTCGGCCTCGGCATCCAAG 240456 35 100.0 35 ................................... TTTTTCTTGGGTTGTGACGAGCCTTTCCGCGATCA 240526 35 100.0 34 ................................... AGTGTGTCCGGTTTTCCTTTTTCCCGAATGCTAT 240595 35 100.0 37 ................................... GACTGGGCTTTCCCAGTTTTCCCAGCCTTGTAGTTGT 240667 35 100.0 36 ................................... TTTTGTAGAATCACCTTTAGCTTGGAATCTGGGTTT 240738 35 100.0 38 ................................... TTACAGGATTGGACTTTACCGACCCCAATACTCAGTGA 240811 35 97.1 36 ..............A.................... GCTGAATGTCCCATGGGACCTCCTCCTTATCGTTGA 240882 35 100.0 38 ................................... GTAAAAAGGCGTTCGTTTGAGGGAGCCCGAAAGGCCTT 240955 35 68.6 0 .........G......ACA....C.....TTTTGT | ========== ====== ====== ====== =================================== ====================================== ================== 10 35 96.6 36 GTTGCAAAGACCTCCAGTTGTGGAGGGATCGAGAC # Left flank : CCTTCTATGCCGGCTTCGATATGATTCGTCAGCAGAGAATTAGCTTGATCCGTCGCGGCACACTGGAAGGACATTGGTCGCCCGTTTTGATGTTTCTGTGTGATAACAATCCCGCAGTGGCGGAACCATCCCCGATCCCACTCATCTTTACCACCTGGACAAACGCGGCGAAAGAACTGGGTTTACAAAGCTGCTTCCCAAGCCCGGGAAGGTTGTGGCCCGCCATTTCAGAAAGCATGGTTTCATCAATCGACAGCTTCACCTTTGATGCCTGTTCTTTTCGCCTAAAGGTTTGTAAATGAAAATGTTAACCAAGGTTTCATGGTTGGTTGTTGTTGATGGAGGTTGGTGAAGTCATTTAAAGTGAAGTTTTTAGAGTGAGGAGCGTATGCAGTTGCGGCGTATAATTTCCCAAAAAGAGGTAAAATTCCGTTGCGCTTGTGGATGTATGTGAAAACCACCTCTGTAACCCTTGTGGCACAAGGGTTGACCAAGGGTCT # Right flank : TTATCATCCTCGGTGAAACCCGCTGGGGTTTCCACGGTAAGTCGGTTGCCAAAGCAAACGATGCCCGACTTGGTACGTGTCGCGGTTCATCCCGCGCTTACGCAAATGACCTTTCGGGCCGCCGTGCCCGGAAGGGGTGTGGTTTATGATGCCGTCCGCTTTTTTTCTGCTTCGGCTTGACTGGAATGTCCTCAAACCGATCACCCGCGTGCCCCATTACCAGGGTATGTTGTGGTCCGCCCTTTTGCGTCACGCCTACAATCCTTGGCTCAAACACGGCGAATCCTTTCACCAAGCCGGGCTGGTTCTTGAACCCGCCGATTTCGGTGTCCCCGAATACGAAACAGGTGACCGCATCGCCCTTGGTCTGTTGGTTCCCGTGCACGAGGCCCTGCGGTTGGCCCAAGTTCTGACACGGCTGGATCAGGCGCCCGGTACCCATGGGCAATTCGCGCCGGGCCGCACCATCCAGCTCACACGGGTCACCTGTCGCTTTTCCG # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAGACCTCCAGTTGTGGAGGGATCGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 244300-244748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000016.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 244300 35 100.0 33 ................................... GTAAGCCTCGGCCATTCGGCGCCGAGCAGTTGT 244368 35 100.0 38 ................................... ATACGATATTCCCCCCTCAATATCTAGGAGCCACCTTT 244441 35 100.0 37 ................................... AATTGCCTCTGTACTGAGGCAGGGAATCCTGGGATCA 244513 35 100.0 30 ................................... ATTTCTTCTAACGTATTCTCTATTTTATGA 244578 35 100.0 33 ................................... ATTTCACTTTTTCTTTTTTCGGTGGGAGTGGAG 244646 35 97.1 33 ............................C...... TCTTTGGTCCTTATGTCTCCGAATTCTTGAAAC 244714 35 82.9 0 ....A........T...A.C..........A..G. | ========== ====== ====== ====== =================================== ====================================== ================== 7 35 97.1 34 CTTGCAGAGACCTCCGACCGTGGAGGGATCGCGAC # Left flank : TGGATGAGGTGAACCATGGCCAAAAAATTTAGCTACTTGGTCAGTTACGACATATCGGAGCCCAAAACCCTGCGAAAAACCGCGGCTTATTTGGAACGCCGGGGCGTACGTCTGCAAAAATCGGTGTTCCTGCTGTAATTACCACAACACCAGATTAAAGGGGTGAAGGCGGATTTGGCGGCAATCATCGGCGACCACCATCACCTGATGTTGACTCCCTTGTGTACGCGCTGCTTTGAACAAAGCATGGTGCTCGGTAAGCAGCCAGAACCCTGTGTGGTTATCTAGAAAACCTTGGTTTTAATGGGTTTATATGGTTTTCTAGGGCTGGTTATTTTTGTTGATGTCGGTGAAGTTCAACAGATTTAAATACTTAGAAGCCAAGAAGCAGGAAACATCACTCAAAATACGACCAAGACGATCACTGTCTTCGACTTGCTCTTGAGGTTGGTGAAAACCGCCTCGAAAACCCTTGCCACGCAAGGGCTCTGGAAGGTACT # Right flank : CCTATGTCTTGCTCGCAAGTGGTCGGTTTCGTTGGGATGCCGCATAGACCTCTACTTGCGAAGGATCTTTGTCTAAATTGAAACTTTGCCTGCTGGGGTTTCAGCAGTTTGTTGGCTGCCAAAGCAACCATTGGCCGCCATTTAACGTGCCGTTGTTCATCTCACTTTTACCCAAATGACTTCCTGACCACCTTGTTCGGAAGATGCGTGGTCCACCGTGGCATTTAGTTTTTTGAGACTCAATTGAGCAGTCTTCAAACCCAATACCCGCGTGTCCCCCATTTTTGTAACATGCTGTGGTTGGTCCACTCCCCGCCACGTTCTGACTAGGAACCCCGTAGCCATGGAAATCGCTCGCCGGGCTGCAGCGTTCAGCGCTCACAAGCCGCATTCCATGCAACCCAGGAGCCGGTTCTGTATTTCACTCAATGCAACGCGTTGATTTGCAGCCCCTTGGAAACAGCGACGTAAGGTGAACCGACCGAAGCCTTGGTTTCACG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAGAGACCTCCGACCGTGGAGGGATCGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 250394-250771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000016.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 250394 35 100.0 30 ................................... TGACATTGAGGGCTTCTTGTTGATTGGGGT 250459 35 100.0 32 ................................... TTTAAGCTCGTCGGCCTGGCTCGAAGAGATAA 250526 35 100.0 41 ................................... TTTTTATCAGGTTTTCCATTTTCTTTCCTCCTGGATAAAGA 250602 35 100.0 29 ................................... AAAGCCTCCCCGTAATTCACCTTAATTTT 250666 35 100.0 36 ................................... AATGCCCAAGAACCTTCGCCTCATCATCTTTTTTCA 250737 35 97.1 0 .................................G. | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 99.5 34 CTTGCAGAGACCTCCGACCGTGGAGGGATCGCGAC # Left flank : TGGATGAGGTAAACCATGGCCAAATAATTTAGCTACTTGGTCAGTTACGACATATCAGAGCCCAAAACCCTGCGAAAAACCGCGGCTTATTTGGAACGCTGGGGCGTGCGTCTGCAAAAATCGGTGTTCCTGCTGCAATTGCCACAACACCTGATTAAAAAGGTGAAGGTGGATTTGGCGGGAATCATCGGCGACCACCATCACCCGATGCTGATTCCCTTGTGTACGCGCTGCTTTGAACAAAGCGTGGTGCTCGGTAAGCAGCCAGAACCCTGTGTGGTTATCTAGAAAACCTTGGTTTTAATGTGTTTACATGGGTTTTCAGCGCGGGTGGTTTTTGTTGGTGTCGGTGAAGTTCAACAGATTGAAATACTTAGAAGCCAAGAAGCAGAAAACATCATTCAAAATACGACCAAGACGATCACTGTCTTCGACTTGTTCTTGAGGTTGGTGAAAACCGCCTCGAAAACCCTTGCCACGCAAGGGCTCTGGAAGGTACT # Right flank : CAATCTCCACTCCAAAGCGAAACAAGCCTACTGTTACAGCATCAAATTTCCTAAAGACTCATCTGACGCGCCATCAAGCTACCGGGGTTCACCCTGCTTCCCGCCGGCACGGCCTTTCTTGGCTTGGTGCCGGGTCTTTTTTGTCCCTGAATTCGTCTCCGCGGGATGCTCACGGTGGCTTTGGCGTTGCTTCCATCGTTCAGCTACAAGGCTGTTCCACGCGGCGCACAAGACATCGAGTGGCCGTGGGTCGGGTGGGGCCAACAAGATACCGCGCAGCCGGGGGCGAAACGCCTCGGGAACCAGATTGAGCCGGATTTCAAACCGAAGGTCCCCCTTCGCAAGGATGAACGCGGTCATGCCTTCCCGATCCGCAAAGACATGCCGCGCCATTCCCTCGATAATTGGGCCATGTTGCGATAAGGCTTCGTTATGAAGTAGCTGATTTAGGAAGGCCTGTTCGAGGGAGTTCAAGCGAAGCGGTTTCCCTTGTCGTCTGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAGAGACCTCCGACCGTGGAGGGATCGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 103660-105086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFREP010000006.1 Acanthopleuribacter pedis strain KCTC 12899 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 103660 37 100.0 35 ..................................... ATCATTGCATGTAATTCGTTAGACAAGTCTTTACC 103732 37 100.0 37 ..................................... AATGGTACGACAGTTGTCTCGCAACTATTCGCATCGA 103806 37 100.0 36 ..................................... CCCACCCAGCTTGATTTAATCAAGGAAAAAATTGAG 103879 37 100.0 36 ..................................... CCCTAACGGGGCTTGCCAGGGCAGCCTGGAGCGGGT 103952 37 100.0 35 ..................................... TGGTGCGAGAGAGAGTGAGCTTGGGAACCAATTGG 104024 37 100.0 35 ..................................... ACACCGGAAGAGGTGCGCACGTTGGTTGCATTGTG 104096 37 100.0 36 ..................................... GGCCGGTAATCGCGGAAAGGTCGGCCATGGATTGCT 104169 37 100.0 36 ..................................... AAGTGCGTGCGGAGGGTCAAGGACAGGCGAGGGCAT 104242 37 100.0 36 ..................................... CTCATCGGCGCCGATTGGATCGCTGATGTTATTGAA 104315 37 100.0 36 ..................................... ACAGAAACAGCCACAGTTGAAGGAAGCACCGCCGAA 104388 37 100.0 37 ..................................... AGAGTTCATGAGTCCTCTTGTAATGGAGTACATCAAA 104462 37 100.0 36 ..................................... GAAAGTTTTTTATGCGGATATGCACATAGAAGAGGA 104535 37 100.0 37 ..................................... ACCTGCTCAGGGGTTGGGTCTCCCTCCCACAACCAAT 104609 37 100.0 36 ..................................... AGTTACGGTTTCCAGCCTGGCCAGCTTGCTTTCTTG 104682 37 100.0 36 ..................................... CTATTTGGGGTTTAGGCCTGGTTATCATGGCCTTCT 104755 37 100.0 38 ..................................... TTTTTAATCGTGATCAAAAAAACGTGGGGACTTTTAAA 104830 37 100.0 35 ..................................... ATCTTTAGAGGAGAGAGTCGCTTCGGTATCAGCTT 104902 37 100.0 36 ..................................... ACGGATGAACGAAAACGTACAATCTCGCCTGAAATA 104975 37 100.0 38 ..................................... CTTAGAAGTGAGCAATCTTAAGGAGATGTTAAAATGGA 105050 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 100.0 36 GTTCCAATCCTTGTTGTAGTGGATGTAGGTCACTAAG # Left flank : AAGAAATCCATTCTGTGCGACGCCAGTTATTGGCTGTACACCGACGAGGGCGGCATTTTGCAGGTATACCCCAAGGTTACCGAACGGGTGGTGGCCGGTGAACACGTGGCACACGTGAGCACCATTTTCGGCAAAAAGGTCAAAAGCTACACCAGCCCCGAGGACGGCATCATCGTCGGCCGCGGTGTTAACCCGCTCAACCAAACCGGCAGCCGCATCATCCACCTGGGCCGCAACCCGCGCGAAATCGACTGCGTCACCGGAACCGAAGACTAAACCCACCAGTGGGCGCAACGCCGGCGCCCACCCATTTCTCCATGGCCGTCGCCCGAGCATGGCCGAAGGAAAGGCCGACAAAGCCAAGGGCAAAGAACCGGGCCGGCAACACCCGCGGGCCAGAACATGTGGCATCGTGTCCTACCGAAATAGTGCGACTTTGTCTGGCTTCTAGGTTAATCACTAAGCAACATTAATGCAACTCCCGATGCGTTAGGGATTGA # Right flank : GAGCTATTTTTTGGAAGTGCTTTCCTTCTTGGGGTTTACGGTGAAAAACCTGTTGGATCTTTTAGCCTTTTTTGGGCCGATAACACCGGATAACACCCTGTTTTGCCTCCCAAATCGCGAGTTTTTTCTTTGCTAATCGCTTGATTTGGTTCATCTTAGCGCATGTTGGTCGGCTTGGGTTCGGAAAGTTTGCCTCGTTCCGCTTCTTTTTCGCCGACTTTCGTTCGGTTTTCTCGCGCCATCCACCACCGCCTACCCACGGCAGCATGCACCCCGATGCCCAACACTGATTGGCCAACGGCTATCGCCCAACACTGATTGCCCTACGCTGAAAACCCAACGCCCAACACTGAAAGCTCAACACTGAATGCCCAACGGCTATCGCCCAACACTGATTGCCCAACGGCTATCGCCCAACACCGAGGCCCTAACGCTGAAAACCCAAGGCCCAACACCTTAACCTCTATGCCCCATGCCCAACCTACAACACCTAACGCGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATCCTTGTTGTAGTGGATGTAGGTCACTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //