Array 1 107442-106393 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYI01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R4934 NODE_1_length_577718_cov_80.728265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107441 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107380 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107319 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107258 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107197 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107136 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107074 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106971 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106910 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106849 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106788 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106727 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106666 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106605 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106544 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106483 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106422 29 96.6 0 A............................ | A [106395] ========== ====== ====== ====== ============================= ========================================================================== ================== 17 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125494-123574 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYI01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R4934 NODE_1_length_577718_cov_80.728265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125493 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125432 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125371 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125310 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125249 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125188 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125127 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125066 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125005 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124944 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 124883 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124822 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124761 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124700 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124639 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124578 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124517 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124456 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124395 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124334 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124273 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124212 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124151 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124090 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124029 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 123967 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 123906 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123845 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123784 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123723 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123662 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123601 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //