Array 1 3587373-3585421 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013990.1 Leclercia adecarboxylata strain USDA-ARS-USMARC-60222 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3587372 28 100.0 32 ............................ TACGTCCATATGGAGTACGGAACGGACATAGT 3587312 28 100.0 32 ............................ GTACTGGCGGTGTGCTGGACATGTGGAACCGA 3587252 28 100.0 32 ............................ TACAGGGGAAAGCCCGGAAAACGCAGCATCAG 3587192 28 100.0 32 ............................ CGAAGGCCGCGCCCATTTCGCTGTAAACGTCC 3587132 28 100.0 32 ............................ GTATTAGTCCTCTGGTGTCCTCCGGCGTTCTT 3587072 28 100.0 32 ............................ GGAATATGCCTTGCAATCCATCCCCGCGCAGC 3587012 28 100.0 33 ............................ CTGTACGGCTGACACCGCAGGCAGCACCTGGAA 3586951 28 100.0 32 ............................ GCTGGTTATCGGTGTAAATGTAATGGTTGATC 3586891 28 100.0 33 ............................ GATATCAGCGCCAGCGGTGACGGCCGGGGGAGT 3586830 28 100.0 32 ............................ GCCAGTTGTTCCGTTGTTGGTAAAGTGCGTGC 3586770 28 100.0 32 ............................ AGCGATAGAGAGCGCCATAGTGGATACCACCA 3586710 28 100.0 32 ............................ TGAAAAGGCGACCAGAAAAGCCAAAGAGAAAT 3586650 28 100.0 32 ............................ TGAAAAGGCGACCAGAAAAGCCAAAGAGAAAT 3586590 28 100.0 32 ............................ TGAATTCCATCGCCGTCATGCGGTGCCTTGAC 3586530 28 100.0 32 ............................ TAACCATACCCGGCGATGCGTCAGCCACCAGT 3586470 28 100.0 32 ............................ GCGACACGGCAATTTGAAAAAATGCCCCCGCA 3586410 28 100.0 32 ............................ ATAACCCAGCAGAATAGACGGCTGATCCAACT 3586350 28 100.0 33 ............................ ATTTTTTCGTTATTGCCCAGGGCGCGAATATGG 3586289 28 100.0 32 ............................ CCTGTCGTATCGCCGGAAAGCAAAAACCCCGC 3586229 28 100.0 32 ............................ TTCATCGCTTAAGGGGCTGCCTGCCAATGATT 3586169 28 100.0 32 ............................ AAAAACACTGGTCTTTGCGGCAATGAAATCCC 3586109 28 100.0 32 ............................ ATAAAACGTGGACTCACCCGGCGGCGGGTCGT 3586049 28 100.0 32 ............................ ATAAAACGTGGACTCACCCGGCGGCGGGTCGT 3585989 28 100.0 32 ............................ CACAACTGACAGTTACTGCGCTGGTCGGTGTT 3585929 28 100.0 32 ............................ TCCCTGGTCAAAAATGGCTGGACAACGGACGA 3585869 28 96.4 33 ......................C..... GTATCCGGGTCTAGCGCACAACTCAGGATGATT 3585808 28 100.0 32 ............................ TCGACCTTCATGCCCCGATCAATCAGCGGCAC 3585748 28 100.0 32 ............................ TCGTTGTGCAGGTTTCGCGGATCGAAACGCAC 3585688 28 100.0 32 ............................ GTGGGTCGGCTCCGGCCAAGTTACCGGCACGC 3585628 28 100.0 32 ............................ TACCAATGAGCATGAGCGATGCCCGGAAGATC 3585568 28 96.4 32 .......A.................... ATTACGCACCCACGGACACACCCACGGTTTCA 3585508 28 100.0 32 ............................ TGACGAAGAATGCCCCGTCTGTTAAGGAGGGC 3585448 28 96.4 0 ...............A............ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCGCGCTCGGTAAACTCGAAGAGAGCCGATGGCGAGCGGGCTTGAATGATTACTGTCGTGCGACGGCGATCCTGGCGATACCCGCCAACACTGGCTGGCGCGTGGTCAGCCGTGTGCAGGTAAAAAGCAGCGTTGAGCGTCTGGTTCGTCGTTCATTACGTAAGGGCTGGATAACTGAAGAACAGGCGCAACAGCGAATAGCGGAAGGGAAGGACAAACGTTGTCATTTGCCATTTTTACCGCTTAGAAGTTTGTCTACGGGTCAGAGCTTTAAGTTATTTATCCGCCATAGTGAAATACAAACGGCACCAGTAAGTGGTTCGTTTAGTAGCTATGGCCTGAGTGACACGGCAACAGTACCCTGGTTTTGACCCTTTTTTTCGTGATTTTATAACTTGTTGATTTTTAATGGGTGATAGTGAAGGTCAGAAAAAAGGGTTTAACGCTTGAAACGGGGGGTTATATAACAGGATCATAGGGATAGGTATTTTAGGTTCCA # Right flank : AAAGTGGCCACCGATATCGAGGAGCTGAAATCGTTCACTACCTATTCCATTGCCGATTCGGTACAGGCACCCGTTTTTTTGCCCCGTCTGGCTTATCGCCAGGCGGGGCATTTTTACGTCCTCACCCGTTCAACCGTCTCCTGCCAGGCTTGCCAGCGTGTCTGCAGCCGGGCATGGCGCGCCATATCTGGGGTAAAAGTGACATGCTCCGGCAGATACTGTCGCAGCTGCGCGGTAGTCAGGTTAAACAGCGCCTTACGGGCCAGCAGGGCGGCTCCCATGGCTGAGAGTTCCGGCACGTCACTGCGCATCACCGGGCAGCCAAGCAGATCCGCCTGGTACTGCATCAGCCAGTCGTTTTTCGTTGGCCCGCCGTCGACCATCAGCGCGTTCAGCGTAAAGCCCGGATGGATGCGCATCGCCTGCACCACGTCGGCAATCTGATAGGCAATTGCCTCCAGCGCCGCACGGATCAGGTGCGCCCGCTTCACGCCCCGGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //