Array 1 10482-8346 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQF01000012.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1501d x_contig000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10481 30 100.0 37 .............................. TTGAACATTTTGCCAACTGAGATTACGCCATTATTTA 10414 30 100.0 36 .............................. GTGCCTGGTGGCTCTGATGGATTATGCGTCGTTGAA 10348 30 100.0 34 .............................. ATCATAGCTACATCATCAGCAGTAAATCTTTGAG 10284 30 100.0 36 .............................. TAGTCTTTTTTCCAGCCACTATTTATTCTGGCTTCA 10218 30 100.0 36 .............................. TAGTCTTTTTTCCAGCCACTATTTATTCTGGCTTCA 10152 30 100.0 34 .............................. AGTTTTCTGAGTATAGAAATGACCCGTTTTGTGA 10088 30 100.0 38 .............................. TCAAGCTTAAACGACAAGCTAACTGAACTTTTTAATTT 10020 30 100.0 38 .............................. TTTTACGACTAAGTATTAATTCATACCGAATAAATACA 9952 30 100.0 36 .............................. TATTTGTGAGTTTTTAGCAAATTTGCACAAGCTAAT 9886 30 100.0 34 .............................. ATAGGTATCCAGTCCGTATGCTCCGCCTTGTTTC 9822 30 100.0 34 .............................. TTGATGTAGGATCTGTTAAACTTAAAGGAATTGC 9758 30 100.0 35 .............................. TTTGTCCGTGGTCTAGTAGCTGGTTTTTTACCCAT 9693 30 100.0 36 .............................. CATTTTCTTTTTGGATTAAAAAAACAAAATTGACCA 9627 30 100.0 37 .............................. TAGAATTCAAAAAAATCAAGGCAACTGTAACAAGAGG 9560 30 100.0 35 .............................. GCCGAAGTTGATACGACAATTATGACACAGTATCA 9495 30 100.0 36 .............................. CACTATCAAAATAAAGAGAGACAATCTCAAATAAAA 9429 30 100.0 36 .............................. TTTTCGTAATGGCTATTTATCTCATTTTTGCCATCT 9363 30 100.0 36 .............................. GTTGAGCCTCTACCTCTTTCCTGCCTTGTTGTAAAA 9297 30 100.0 35 .............................. TCATAGTATATTGATACCGCATAAGTGGATCTATC 9232 30 100.0 39 .............................. AATTTTGGCGATAATATAATTTCATTTATCTTGAGTTTT 9163 30 100.0 34 .............................. AAAATTCATTCAACATTTTTTCCCTTTAAATTTG 9099 30 100.0 36 .............................. TAGGTTGGCATTAGGAATCCTTTTCAAAAGGGCAAG 9033 30 100.0 34 .............................. TAGCGTAAATGTCGAAGTTATAAACGAGTGCTTA 8969 30 100.0 35 .............................. TACCTTTGGCGGTGGCTATGGGATAAGCCCTATTG 8904 30 100.0 36 .............................. CTGCTGAACAGAACACTTGAGATGAACTCTTCTCTT 8838 30 100.0 36 .............................. TAGGTTGGCATTAGGAATCCTTTTCAAAAGGGCAAG 8772 30 100.0 37 .............................. TGCTTGAAACAATGCCTGGTAACCAATTTTGCAAGAA 8705 30 100.0 35 .............................. AGTTCATCCCCATCCTTTTTCTCTAAATATTTGTC 8640 30 100.0 36 .............................. AGTAAAGGAAAGTTAAGAAATGATAGGCAATTTACT 8574 30 100.0 36 .............................. AAGGCTTTAGAAGACGCAAGGGCTAAACGTGAAGAA 8508 30 96.7 36 ......................A....... TATTTTTGCAATAATAATCAAAAGCATACTGCCACA 8442 30 100.0 37 .............................. CAAAGCTCATTTGCTCTTGCTCTTCTTTTGGCACAAG 8375 30 96.7 0 .........................T.... | ========== ====== ====== ====== ============================== ======================================= ================== 33 30 99.8 36 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TTGATGATTTTATAAATACTATATTAAGCCATTTTTTAGTAAAATAAATATAGTAAAACTTGGTACAAAGTACTAAATTTAGCTGTTTTTGTTGC # Right flank : TTTTGTGATTTGCATTTTTTATCGCTGTTGTAGCTGTTTTGATATTTTTATCCAAAACATCGCTTAGGGTAGTGGCTGTTTTGTTGATCTTATTAAAAGCACTATTAAACTCACTTAAATCAACTCCAAAGGTTAGAGTAGGATTTGCCATATTTAATCCTTTATGTTATACTTTTTAAAAAAGGCTTGTAAATGTTTAGTTTTATTATTATGGTTTTGGTTTTTGCTTTAATAAAATTTTATTGTCATTTTGATTTTAGCTACTCAAAGCCTTACACTGGTAAAACTGATACAAGATATAAAGATATCAAGCTTTAAGCCTCATTTATCCTTTTTGCTATCTCAAAATAATCTATAAATTCATTTAAATCCATAGATAAAATCTCATTAAACCCAAAATAGAAAATTCACATTTTTAGGATTTGTAGCTTACCTTTTTTATATTATAATAACCATATGGAAAGCATTTATAAAACTATACTTGAGCTAATAGCTCACAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 3291-255 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQF01000020.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1501d x_contig000020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3290 30 100.0 34 .............................. TGTTTGGCTAATTGAGCTTTGTAGCCGTTGATTT 3226 30 100.0 34 .............................. TCATAGTTAAATCCCTGTGCCCCACCATTTTTTG 3162 30 100.0 35 .............................. GCGGAAGCACAACAGCAACATTTCTAAGCGCCAAA 3097 30 100.0 37 .............................. TCTTAAGCTCACACTCTTTTAATGGGCTACCTTTATA 3030 30 100.0 34 .............................. ATTTCTAGCTGTTTAAGGCTATTAAGTGCTTCAA 2966 30 100.0 38 .............................. TCAGGGATAATAACTCTACTTGCATTGACGCTATTAAC 2898 30 100.0 36 .............................. TATCAGGATATAGCTCCGTATCTGCAAAGGCTGGAT 2832 30 100.0 38 .............................. CCCTTGAAGTAAGTGTTGAGAAAATTTCTCAGACTTTG 2764 30 100.0 33 .............................. TAATCAAGAGAGTTTTTAAAGATTGCTCCAAAA 2701 30 100.0 36 .............................. GCAAATGAGAAAGGCATAGGTAAAAATCTTGCAATA 2635 30 100.0 34 .............................. GACTTTGCAAAGTCGTTTCTGCAGTAACTTCTGA 2571 30 100.0 37 .............................. AAAATTGAGTTTCGCTCAAAGTTTCTTTTGCAGTTTG 2504 30 100.0 35 .............................. ATTTTTCAAATGTGATTTTTTTTGAAAGTTGATAG 2439 30 100.0 34 .............................. GAATTACGTTGTTAAAGGACTTCTAATGCCAACC 2375 30 100.0 35 .............................. TACGATAACCTTAACCAAAACAATGACAAGTTTGA 2310 30 100.0 34 .............................. AAAATGAGCATTGAAACTTTGAAAAAATACCGCC 2246 30 100.0 35 .............................. GAATTGTGGCAGTTCCTGAGATGAACAAGGCTAAC 2181 30 100.0 36 .............................. TGTTTGCTATTTCCTCCTTTTGGTCATAAGAGTAGC 2115 30 100.0 37 .............................. TTTGTATTAGTGGCATTGCTATCTTGCTCTGATATAT 2048 30 100.0 36 .............................. TCCTTATTTAGTGGCGTTCCATTGCAAAGCTCTTTA 1982 30 100.0 37 .............................. TACTCCCTTTTTTCATACCACTCCTCATTGCCAAATT 1915 30 100.0 36 .............................. CGTAATTTGCACAACCCCTAGTAAAGCCTAAACGCC 1849 30 100.0 34 .............................. ATAGGTATCCAGTCCGTATGCTCCGCCTTGTTTC 1785 30 100.0 34 .............................. TTGATGTAGGATCTGTTAAACTTAAAGGAATTGC 1721 30 100.0 36 .............................. CATTTTCTTTTTGGATTAAAAAAACAAAATTGACCA 1655 30 100.0 35 .............................. GCCGAAGTTGATACGACAATTATGACACAGTATCA 1590 30 100.0 34 .............................. AAAATTCATTCAACATTTTTTCCCTTTAAATTTG 1526 30 100.0 35 .............................. TATCTATACTTTTTTGATTAGAAAATCCATCAACG 1461 30 100.0 35 .............................. GCTATCTTGAAAAAGGCTAAAAATTTATTTAGGTC 1396 30 100.0 35 .............................. TATCCCCATTTTTTGATAAGTTTGGTAATGCAGGT 1331 30 100.0 36 .............................. CGATTTCATCTTTTGATAAGTTACCAAATTTACCAC 1265 30 100.0 36 .............................. ATATAAACTGGCGAACAGTTTGCATATTCCATTGAG 1199 30 100.0 37 .............................. TGCTTGAAACAATGCCTGGTAACCAATTTTGCAAGAA 1132 30 96.7 34 .............................T TAGAATGTTTATCAAAAAAACAGATGGATATATT 1068 30 100.0 36 .............................. CTGCTGAACAGAACACTTGAGATGAACTCTTCTCTT 1002 30 100.0 36 .............................. TAGGTTGGCATTAGGAATCCTTTTCAAAAGGGCAAG 936 30 100.0 36 .............................. AGTAAAGGAAAGTTAAGAAATGATAGGCAATTTACT 870 30 100.0 35 .............................. TATCCCCATTTTTTGATAAGTTTGGTAATGCAGGT 805 30 100.0 36 .............................. TATTTTGTGTTTGATAGAGAGCTAAAAAATGATAGA 739 30 100.0 34 .............................. CCCTGAGCCAATTAACAAGCTTGATTTGCTCTTG 675 30 96.7 36 ......................A....... TATTTTTGCAATAATAATCAAAAGCATACTGCCACA 609 30 100.0 33 .............................. ATTTGATTTCATCTCGCAATATAATAGCATCGC 546 30 100.0 37 .............................. TTTTTCATCATTTTTATGATTTTTTTGTGATTGACTA 479 30 100.0 35 .............................. TTTCATCTACCAGCACCAAACTATAAATAAGCAAA 414 30 100.0 35 .............................. CCATCATTTCTATGGTCTTTTTTAAAAACGCAATT 349 30 100.0 35 .............................. AAAAATATCTTTGCAAGTTTGGCAAAGAGAGGCAG 284 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 47 30 99.9 35 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TTGATGATTTTATAAATACTATATTAAGCCATTTTTTAGTAAAATAAATATAGTAAAACTTGGTACAAAGTACTAAATTTAGCTGTTTTTGTTGC # Right flank : CTAGGGCTATATTTTGCGTATAGTTTTACCATAATTTTTATAGCTAAATTTAATCGGTTTTCATAGTGCTTTAAAATCTTTGATTTTATATAAAATAAGCAAATAATAATTGCAAAAAAGCCGATTGATTTAATTCACACCAAGGACTAAATTTGATACTTTGTGATACAAATTACCCTAGTATTTTAGATGATATATGCGATGAGCTTACTAAAGCAGAGATTGAGCTTGTATTTGTTAGTAGTGATGAAATGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //