Array 1 5838-6355 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBM01000013.1 Escherichia coli strain MOD1-EC6171 MOD1-EC6171_13_length_129313_cov_20.7724, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5838 29 100.0 32 ............................. TGTCCGAATTACTACACCGCCGAACAAAACGC 5899 29 96.6 32 ............................A TGATCGCCGCCATGATTACTTGCCTTTTTTGT 5960 29 100.0 32 ............................. GTCAGCACCGCGTGCTCTGCCTGCAGGCTGTC 6021 29 100.0 32 ............................. TCTATATCGGTGCATATATCCCCGACGAAAAA 6082 29 96.6 32 ............................A GCGGCGCATAACTGATAAACAATAAATGCCGC 6143 29 100.0 33 ............................. GGCCATCACGGTTTTATTCAGGTTACTGCAGAC 6205 29 100.0 32 ............................. CTGCGCGATCCAGCGCTCGACTTTGATCGTGA 6266 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 6327 28 75.9 0 ..A........C..T....A..-.C...C | T [6346] ========== ====== ====== ====== ============================= ================================= ================== 9 29 96.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGGGAAATACAGCCGCCGGCCCCACCTGAAGATGCGCAGCCTGTTGCTATTCCACTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGCTGGAAGTCCGTGCAGGAGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATATCCGGACTGGCGGAGGAGGGCAATGTAGTGATGGCATGGGCAACGAATACAGAATCGGGATTTGAGTTCCAGACATTTGGAGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTAAAAACAAGGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATCAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCTTTATCAATATGTTGCTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCTTTATTCCCAAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACATCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1110-166 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBM01000080.1 Escherichia coli strain MOD1-EC6171 MOD1-EC6171_80_length_1216_cov_13.4105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1109 29 100.0 32 ............................. ACTCTTAATAATGCAGGCGACGCGCGCGGCAA 1048 29 100.0 32 ............................. CGTTCTGCGTTGCTATGCAGATCGCGCAGCGT 987 29 100.0 32 ............................. TGTTCCGGTCATATATTGTCAACATTGCGTTG 926 29 100.0 32 ............................. GTCGCCGCGATAAAGTGCGGCGGCTGGCGACT 865 29 100.0 32 ............................. CCTGCAGCTGGCATGATTCGCGCCGATGAGGA 804 29 100.0 32 ............................. ACCCCCAAAAATTTTTGCCCTTAAGCCGGGCC 743 29 100.0 32 ............................. AGGGGGGATACAACTTCCAGCAATGGCATCTG 682 29 100.0 32 ............................. GGATTCTGATTAATTGTTGTCATTATTTTCAC 621 29 100.0 32 ............................. TTCCAGCAGCATCTGCTATTGATTGGATCTTA 560 29 100.0 32 ............................. CGATCGGCAACAGCATGGCGGTGCCGGTAATG 499 29 100.0 32 ............................. CCGACGTACAACTACGGAGGCGTGTCGATTCC 438 29 100.0 32 ............................. TGGGGGCGATTGACGAGCAGGCGCGTACCGTT 377 29 100.0 32 ............................. CAATCCACGCCGAAGCGCTGGAAATGGAAAAA 316 29 100.0 32 ............................. CGATCTTTTCCTACCTGGTACAATCAGTAAAT 255 29 93.1 32 .T..........G................ GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 194 29 89.7 0 A...............T...........A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTATTATTTGTATAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //