Array 1 61690-62123 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNRJ01000001.1 Staphylococcus sp. 191 SC191_S10_L001_Assembly_Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 61690 36 100.0 30 .................................... ACGGTTTAGTTAATGCAGACTATAATCGTC 61756 36 100.0 29 .................................... TCAATCTATAAAGAAAAAAGAACCAACGT 61821 36 100.0 30 .................................... CACAAGGTAAACCAGTTACTTATCGTGTTA 61887 36 100.0 30 .................................... TAATCGATGCTGCTAGAGCTATAGGATTAT 61953 36 100.0 29 .................................... AGCATAAGGACGGTAGTACCTCAGTACGT 62018 36 100.0 30 .................................... CCAGTTTAATGTTTGTTTCTATTCTTGCGA 62084 36 80.6 0 ..............C.......T.A......C.CGG | AA,CT [62105,62114] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.2 30 GTTTTAGTACTCTGTAATTTTAGGTATAAATGAAAC # Left flank : ATTATATTAGAAATGAAAAGCAATTATTGACAGCAGAGTTTATTGATCACTTGGTGTGGGATGCACCACTTAATTTTGAAAAGCATGAAATTAAACGTAGCTTAGAAAAAATTATTCAATTATATCAAGAGGTCATTGAATTAACTCCGAAGATTTCAAATTATAATTTAGCTGATATCATTGTGTTTGAGCCAATAGATATCTATGTTGTCGTAAGATACCTTAAACATGCAAAACAAGATTTTGAATTGGATATCCATTATGATAATTTACCGATTGCTGTAGCGAAATATATCAAAATGTATGATTTGAAGTTTAATAAATAAATCTAAACGCCTATTAAAGGGAAAGGTTCTAGCGCTTGGTCAATTGACTTGTAAATCAATCGATTAATCAAGCGCTTCTAGATTATTTTAAACAAAATTAAACGAAAATTTAAAAATGTCTAGCATAAACTTGCTTATAATAATCATAAAAATAAGCTATAATTATAGCTAGAG # Right flank : GATTGTTATAAAATTTGTTTATAATAAAGACAGAGATGTTTTCTAAGATACCTCGTGCTTTTTATTGATTGTATAGCACAAAAAGGCAGAGAAAAATTTGTGAATGTTTTTAACATTTGATATTAAAAAGAGACAAGAATCTTAATTATGATTATAACTATGTAAATGATTATAAAACTTGTATCTTTATATGTAGTACTGTAAGTTTAGTAAACAAATTAGAACAAATTTTAAAATTGTTCAAGACTCATATAATTCAATATATGAAAAATACAATAATACTAAAATCAATTGACAAGTATTCTTGCTACTGGCAAACGTTGTGACATAAACAATACGGTAGCTTTGTCTATAAAAGTATAAGCTCATTGATGTGAATCTGCTATATACATCAATGAGCTTTTATTTTTAAAGTACTTGTAGAATGAATACACTAAAATTCAGAATTTAATTATTATGTTCAATATTGTTAATTACTTGTTCATATGATGTATTTGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 34939-34686 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNRJ01000003.1 Staphylococcus sp. 191 SC191_S10_L001_Assembly_Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 34938 36 100.0 36 .................................... CATCAATCCTTTTCTTTTGTTATTTTAATATTAACA 34866 36 100.0 38 .................................... TGAGTTGATTTGATTGTTTTGTTTTTCCATTTAAATTT 34792 36 100.0 35 .................................... GTTGATTTATCTGTTGTAATGTTTTTAGCGTTTGA 34721 36 94.4 0 ..................................GA | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 98.6 37 AATCAGATAGAGCCCCGTACAAAAGGGGACGAGAAC # Left flank : AAATGTATGATAAAGAGACATTGGATTTCATGGGAAATCATATAAAGATCGTTGATTACAGATTAAAGAGCACTCGTTTTCATTTAGAAAAGGTGAAAATACCTTCGTTTATGGGCGAATTCACTCTAAATATTACTGGGCCATTGCCATTTTTGCAGTTAACACATTTTTTATTAAGTTATGGTGAGCTTTCAGGTGTAGGAGTAAAAACCAGCTTAGGCATGGGTAAGTATAGTATTATAAAGAGAAGAAAAAAATAGAAATGTATAGCAATAAGATTTATATTTAATAAACTCTTTGATTACTGATGAACACATCTTAAGTTCGTAACAAGATTAGTTCTATAAAAGTAGTGTATAATTTATTATGGAGATAATGTAACTTAAATATAATGACCTAAAAGTGGACATCATTGTGTTATGGCAATGAGGTTAAGCCCATCTTTTGGACCAGTATTTTATACTCCTATGACTGTAAAATATGGATTTATACAGTTGACT # Right flank : TTGAAAACAAAAAGTTTTTCTTTTAGATCATCATCAATGAGAGAATAGCCATACAGAAAGCTTTGTGTTTGATTTGATATGTTGATGTTGCGTTTTAGCCATCTTCTATAAAATATAAAAATAAAAACTGGGCAACCGTGTGCCCAGTTTTTTGTTCAATATTTATTCGCGTTCTATGTTGAGGGGATGGTTCTTTTATACATCTCATTTGATGATGCCAATCCCCAATGAGTGATACAACTATTTGTATGCTACTGTGAGCTGTGAGGACCTCACTGTAACTATCCAATTTCTTAATTCATAGTCAAACCACCATCAACAGTAAAGTTTTGTCCTGTAATCCCTGAAGCTTCTTCAGATGCGAGATAAGCGACGGTATTGGCAACATCTTGAGGTGTTGTCACCCGTTTTAAAGGTGTCGTTTTTGCAATTAAATCAAATACCTCAGGGGTTGTTACAGCGCTCGCATCCGTTGTTTTGAGTAGTCCTCCTGAGACAAC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCAGATAGAGCCCCGTACAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //