Array 1 1680-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOHV01000012.1 Bacteroides fragilis strain AD135F_1B NODE_12_length_149158_cov_61.017218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 1679 35 100.0 34 ................................... TTAAGACTCCGAAGATTGACCGAGGCGGCTCGAT 1610 35 100.0 34 ................................... TTATGTGTCGTAGCGAAATTGATGCTGCTTATGT 1541 35 100.0 39 ................................... AGAATTTAGTATTAACTTAAAAATTTGATACCTATGAAT 1467 35 100.0 36 ................................... AGACATTGGATTTGAAGGTTTACAGCAATGTAAGCC 1396 35 97.1 34 ..................T................ AATTATTGTCTTCAAGGCCGGGAATATGTTTTGT 1327 35 100.0 34 ................................... GGTTACTGAAAGGCATTACCAGTTGAGAAATCAT 1258 35 100.0 35 ................................... GCTTCCTAAGCTGCTTATCTTAGTTATGGGTTGGC 1188 35 97.1 34 ........T.......................... AAAAATAACCGTCAATTTTGAAATCGACATTAAA 1119 35 100.0 37 ................................... TTTGAATACGGTGATTTGACGGTTTTGGCCGGTGCTT 1047 35 100.0 37 ................................... ATTAATTCTTTATATTTATGGAACGTACAGAAATATT 975 35 100.0 40 ................................... TCTTTTCAGGCCACCAGCAGACCGGAACCAAAGCAGTAGA 900 35 100.0 36 ................................... TGAAAAATTTTCAAAGTTTGCGGAAAACCGTGACAT 829 35 100.0 35 ................................... TCGGTCAAAGAAAGCGGGACTTATGTAACGATTTT 759 35 100.0 36 ................................... ACCCAAAGTCGTACCTCAACAAGGTATCGGTTCCGT 688 35 100.0 35 ................................... TCTATATGCAGTCTCACGGAGAGACAATGAAAGAC 618 35 100.0 33 ................................... TACATTACTGAGAGGTATAGAAAAGGCTATTAA 550 35 100.0 34 ................................... ATAATTATTCTGCAGCCCCTAAAGCACCTTTTGT 481 35 100.0 34 ................................... TTTGTTGCGCAATTGTTGCCGCTGTCTTATATGT 412 35 100.0 38 ................................... AAAAAGAAGCAAGAACTTCTGTAACCGTCAATGGTACC 339 35 100.0 36 ................................... TTAGGATTAATATCAGTAGCGTTAATAGGATTATTT 268 35 100.0 35 ................................... AGTGAAGGATTGGATTGGCGAACAATTCCAAAGAC 198 35 100.0 37 ................................... TTTTCAGCACAGTCTCATGAAGAAGGTAGACAGTTGT 126 35 100.0 35 ................................... AGTGAAGGATTGGATTGGCGAACAATTCCAAAGAC 56 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 24 35 99.8 36 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAATTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTTACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : TTTTTCAGCACAGTCTCATGAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 1122-2699 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOHV01000006.1 Bacteroides fragilis strain AD135F_1B NODE_6_length_405264_cov_74.770808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1122 47 95.7 29 ...A......A.................................... CGTTCAGCACATCTACCCATAGCTTCTCA 1198 47 100.0 30 ............................................... CGTCCGGCAAACCTACAAATTAAAAATCAC 1275 47 100.0 30 ............................................... AGATGATAGTTTCCCGGTTGCCTTCCCGTC 1352 47 100.0 30 ............................................... GTAGAGTCCTACCGTAAATTTGGCGTATAC 1429 47 100.0 30 ............................................... ATTGTATAAAAAAGCCCGCCCCATTCACTC 1506 47 100.0 29 ............................................... TGGATAGGGAATTAAGTGAAGCAGGAGGG 1582 47 100.0 29 ............................................... TTGTACTTGGCGGCTGTTGACTGCCAGTT 1658 47 100.0 29 ............................................... GATGTGCCTTTTTCTGCAAAAGTCGTGCA 1734 47 100.0 30 ............................................... ACAAAACTGGCATATTACCATTAACAAGAG 1811 47 100.0 29 ............................................... CGTACTTACCGTTTTCCGTCTCAAAATGG 1887 47 100.0 30 ............................................... CCAAAGATCTTTATTCCAATTGGCATAACG 1964 47 100.0 30 ............................................... CGTGGTAAATACACATGATTATACCATGCT 2041 47 100.0 29 ............................................... AGGAACAAAAAACCATTCGTAATACTCAC 2117 47 100.0 29 ............................................... TTCAATAAATCGGGTAAATACAAGAATAG 2193 47 100.0 30 ............................................... ACTCCTTGTCCGTCTTTATCTCGACCGAAT 2270 47 100.0 30 ............................................... TTTTATTTTGTTTAGCTCGTATTGTGCGGA 2347 47 100.0 30 ............................................... CCAAAGATCTTTGTTCCAATTGGCATAGCG 2424 47 100.0 30 ............................................... CCGCTACTGGTAAAGTTGGTGGTTCAGCCA 2501 47 100.0 29 ............................................... TCTGGACTCGTTTCTCCATAACCAAGATA 2577 47 100.0 29 ............................................... TCTTAATATGGTAAAAACCATTTTCAACT 2653 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGAATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 42176-41931 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOHV01000018.1 Bacteroides fragilis strain AD135F_1B NODE_18_length_42195_cov_59.178687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 42175 35 100.0 37 ................................... TTTTCAGCACAGTCTCATGAAGAAGGTAGACAGTTGT 42103 35 100.0 33 ................................... CTGAACTGGCAGCCGATGCCGAACCCCTGCGGG 42035 35 100.0 35 ................................... AACATGCAACAGCAGAAATGCTGCCGATAAAGCTT 41965 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 4 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TGGCGAACAATTCCAAAGA # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGCATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //