Array 1 843484-844575 **** Predicted by CRISPRDetect 2.4 *** >NC_020515.1 Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 843484 36 97.2 30 ...............T.................... GCCGATTTTAAATTCCATCTCAAGCTTTTC 843550 36 100.0 30 .................................... AAAGTCCCACGTCAAAATAATACTTGACAA 843616 36 100.0 30 .................................... ATGCTGACAAATTATTAGGCGTATGGCAAC 843682 36 100.0 30 .................................... GGGCAGTTGCAAGACATGTATCAAAATCTT 843748 36 100.0 30 .................................... CACAATCAAAAGCGATTGTTGATGATTCAA 843814 36 100.0 30 .................................... CGTACATTCGGTTATACATCAACGCTTAAA 843880 36 100.0 30 .................................... CCTCTTTGAGATGTTCCACGAACCACAACG 843946 36 100.0 30 .................................... CAGTGTATTCGCATTGGAAAGCGTAAAAGA 844012 36 100.0 30 .................................... TATTTTCTGTACCACAACCTTGCCTTGCTT 844078 36 100.0 30 .................................... CGTACATTCGGTTATACATCAACGCTTAAA 844144 36 100.0 30 .................................... CCTCTTTGAGATGTTCCACGAACCACAACG 844210 36 100.0 30 .................................... CAGTGTATTCGCATTGGAAAGCGTAAAAGA 844276 36 100.0 30 .................................... TATTTTCTGTACCACAACCTTGCCTTGCTT 844342 36 100.0 30 .................................... CGAAGTAAAAATCATTGGTTATGTAGGGCA 844408 36 100.0 30 .................................... AAGTAAATATTACACAGGAATTATGGGAGA 844474 36 100.0 30 .................................... CCGGCTCGGTGATTTGAGCAATGAGGTAAT 844540 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAGACGCTATCCTCAACCGTGCGTATTGCTTATATGGTATTACCGCCTGAATTATTAACACGTTTTCATCAACAATTGGGCTTTTACGCCTCTACGGTTTCAAACTTTGAGCAATATGTGCTAGCGGAATTTATTCAGCAAGGCTATTTTGAAAAACACATTAACCGAATGCGAGCCTATTATCAGAAAAAACGAGACCATTTGCTCTTTTCGCTCAAAAATAGCCCGCTTGCAGAAAAAATTACGATAAAAGAAGAGAATGCAGGGTTGCATTTTATTGTGCAATTTCACACGGAGTTAAGTGATGAACAAATTCTGCAATCTGCCAATGAGCAAGGTATAAAGATGGTGAGTTTAGCTCGTTATTATCAAGATAAAAGCCAAGCACCGAAAAATGCATTTGTAGTGGGTTATTCTAACCTAGCAGATAAACAAGTTGATGAGGTGGTGAGATGGTTGAAAAATATATTTAGTCGTAGAGTGCTATAGTTATATGTAGG # Right flank : TAGAGTGGTATGAACGCCTTATGTTATAAGGGGGTATTGCGTTTTTAAGCGATTAAAAAACGTGAAAAAATACCAAACAAGCGGTCTGTTTTTGGAAATTTTTTGCAAGATTTTGCAGAGTTTTTTGAAAACAGACCGCTTATTTTTCTCTGTTTTTTGTGGAAAATTGCCGATTTAGTTTATTTGTGTGAACAAAATATCGCCAATTGAACAAAAGTTTTTGTGTAGCGTAAAAAAAATTTTCTTATGGTTGATTTTATTAAAAAAGTAGCAATTGGTTTGCATTGACTTTTTCTTCTTGTGGTTTCAGTTCCCCCACGAGCAACAGCATTGATGTGAACTGTTTTTCGGTGATTTCCAAGCAACGCACGGAGCCTTCCTCCGGCAAATGTGCCGTCAGTCGTTTATTGTGCTTTTCTAATGAATCTCTTCCTCGCACAATGCGGGTGTAAACTGAAAGCTGTAACATTTGATAACCGTCTTTAAGTAAAAATTGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 2 950542-950176 **** Predicted by CRISPRDetect 2.4 *** >NC_020515.1 Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 950541 32 100.0 35 ................................ GACAGAGCGGTATTACAAATAAATCGTGTTGCTTG 950474 32 100.0 35 ................................ ATTTGCTGATAGTGGCTATTTAGAGACGGCAGCAA 950407 32 100.0 35 ................................ AAATGGAATGAAACGCAAATCCCTGTTTCAGAAAT 950340 32 100.0 35 ................................ CGCAACTTTATGAAAGAACACGGCGGAGTTCGTGC 950273 32 100.0 34 ................................ GGCAAAGGTTGGGTAAATCGTGTAGCAGGTAATC 950207 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 35 GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Left flank : ATGACTGTCGATCTTGGTATTAATAGTAATGATAAAGTGGGGGATGAAGCTGAGCTTTGGGGGGAAAATTTGTTAATTGAAGAAGTCGCTAATGCCATGGGGGTAATCAATTATGAATTAATTACCAAATTAACCCCAAGAGTGCTTTTTGAATATCTTGATTAACGCTAGCACATTTAAATAATCTTGTAACATCATTCAAAAAAAGGATATTACACAGCGTTGAATAGTTTGCAAAAAATTCCCTGAAATAGACCGCTTACATAAGATAAAGCAACATTACCTCCTAATGTTTCATGTTTATTTCTCTTCTCGCTAACCCTCGGTTCTCAGCAAAATACCAAGAGGTTAGCGATTTATTATTTCCCTTACGAATCAAGTTGTTACAAACTTCCATCATATAACAGATATTATGCTACACTATAAATCAATCCCCATATTTTAAGCTAGCGAATTGTTAGGGTTTAATCCTTGTGACGTAATGCTTTGAGATATAGGGA # Right flank : TTAATGGTTTTGCATACCGTTACCCCCTCAAGTAGCAGCTACCTACGGGTAGCTGCCATTCTATTTCTAGCAAAGATGAATGTTACTCAAACAAATCTCCAAGCAAGAATTGCAATACCGAATCCATTCTTAAGTGAGGAAGAGCTTGGTCAAAGTCGATTTTTCTAGGTTCAAACTGATCGAAATCGAAGGTATGATTTTGCCAAAAATCCGAATTCGGTAGCCGATTGGGGACGCTCCCTGCAAACTGGGTTACCTGTCGCTTATCCTTTGTCCGTACCCCTCGAATAGCTTTAAAGCTCTGCCCATTTTCACTCACCGTCACGGCTTCGGTCGCTCGAATTGCAGAAATGGCTTGATAAGCTGTTTCAATCCCGTCAAATTCAGCATGTCTGCCACCTTCCTGCACTAACTGTCGCATAAGACTTTCTAAATTTGGAAGCTGATCACTTGTGATGTGATCGGCTTTAGTTGCGGCAAATAGAAGTTTATCAATATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.80,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1552928-1554893 **** Predicted by CRISPRDetect 2.4 *** >NC_020515.1 Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1552928 32 100.0 35 ................................ AGGTTAAATCTAGACGAGATAATGGAGATTGCCAA 1552995 32 100.0 34 ................................ TGTTAAAAATAAACCCTGCACGGGGCAGGGTCGG 1553061 32 100.0 34 ................................ ACCGAAACCGAAATCTGGGCAAGTGAGAGCGACA 1553127 32 100.0 36 ................................ ACATTAGGAACGCAAGACCAAGCCTCATTACAAGGC 1553195 32 100.0 36 ................................ TTGCAGAGGATAGAAATTTCCGCACCCATATTTTCG 1553263 32 100.0 34 ................................ TTGATATTATTGATAATATGGAAAAAGAGATGAC 1553329 32 100.0 34 ................................ ACTCGAAGCCTTAGAGCCGGATTTTGTGCCAATC 1553395 32 100.0 34 ................................ AAATGAAAGCGTATAAATCTCGCCACTTTGCAAT 1553461 32 100.0 34 ................................ TGGCGTGGTAAGTACCGATAACATTCCCGAAGAC 1553527 32 100.0 34 ................................ TATTACAACATTTGACAATCAAACATTATGGGAG 1553593 32 100.0 35 ................................ CAAAGGTGCTATTGTACTTAGTAGCAAGTCAATTC 1553660 32 100.0 34 ................................ TAAGCAATTATAAAGAAAGAATAAAAGACGTTGC 1553726 32 100.0 37 ................................ ATCACCGTCCAACTTACCTTTGTTGAATGCTTGTGAG 1553795 32 100.0 34 ................................ TAATATGCCCTTGCATAAATTCCACTTTGCCGTG 1553861 32 100.0 34 ................................ CTGCCGAGTAATAAGCCAAGCAGAATTTCAAGCA 1553927 32 100.0 34 ................................ TTGTGAACATCGAGCAAAATATCGGTCATTGCAC 1553993 32 100.0 35 ................................ ATCATAAGTGGCTTTACGAGTGGCTCTTGGCTCTT 1554060 32 100.0 34 ................................ CCTAGCCCCCAAGCACCTTTGGCAATAGTCTGTG 1554126 32 100.0 34 ................................ GAGATTTAGTAATTGCTCCATTGAAACGTGGAGA 1554192 32 100.0 37 ................................ GTGCCGAGACTTGCCGGTGTATCGGTCACAGCTAAAC 1554261 32 100.0 36 ................................ ATAGCCGCCCAGCTCCTTAATCTTATCCAGCGACAT 1554329 32 100.0 35 ................................ AAATTATGCCTTAATAATACTTTAAGTTTTTAAAA 1554396 32 100.0 35 ................................ TCTTCTGAGCTTTCCAGGCATTAAAACCTTGCTCA 1554463 32 100.0 34 ................................ TCAGGGTCGCATAACTCCACTTTGCAGCGATGTT 1554529 32 100.0 34 ................................ AGTGAATATACCGCTCAGCGTGCGTTAGAAAATC 1554595 32 100.0 35 ................................ GCCGTTTAGATAACCTTGTCAGGCTTGGCACGATT 1554662 32 100.0 34 ................................ ACTATTTTTCACGTTATAGAGATCGTATTAGCAA 1554728 32 100.0 34 ................................ ATTACCCTGCCAAATTATCGGTTGGCTGAGTTCG 1554794 32 100.0 35 ................................ TCATCGGGCTTTAAGGTCAAGGCATTATCCACTAA 1554861 32 90.6 0 .........................C.A...T | G [1554881] ========== ====== ====== ====== ================================ ===================================== ================== 30 32 99.7 35 CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Left flank : AATCCTCCAATTATTGTGATTCACGGTAACCAAATTGAGCGTTTACCAGATAGCTATAAACGTTATTTATCAAATTATTATCGCAAGAGCCTAAAAATTATCGGCTCACCGATTCGAGTGCTATTCCAAGAAGGTAACAACCCCTTTGCCGGCAAGCGCAATAAACTCACACCAAGCCAGCTTCGAAAACGTAAACGCTTGATGAAGTTTATTAAGAAAAATCGGAAGTAACTTATTTGCACCTCAATATCCTTAGTATTGAGGTGCTATTTTCTATTGATTTTCTCAATATATCCTACCGATGTATAATTCGCTATCTCGGAGTTCTCTCCAAAATCGTATTAGGTTAGCGAATTTCATTTTTCCTCAATAATTCAATATGTTAGCCTATTCACGCTATTTTATCTTTAACCTTATGCTATACTGAATCAGCCTATTTTAGGATATTAGCGAAAAAGAGGTTTTCGAGCCTTGATTTGTAATGCTTTTTACCATAGGCA # Right flank : TACTTTTTCCACAAACAAGAGTCTATTTAATGCTTACTCTATATTGCAAAATAATATGTATATCACAACGTCCCCTTTGATTAATCTAGATAGCATGCGATCTTAGGAATAGGCATTGTAAGTTCTTGTATATAATTGTAGTATACATCATCCATTCTCTGCATAAATTTACGAGCTTTAATGAGTAAGACCGAATTTATCGCCCATGTTCGAAAATCTAACAAACAGTTACAGTCCGTTTCAAACCATCTTTTAGAAACTGCCTCAATCGCAAGAACTTTGGCTGCTAAATTAGATTTAGCTGATGCTGGGGAATTACTCGGTTTAATGCATGATTTTGGTAAATATTCTAAGAAGTTCCAAACATATATTCGCCACGTAACCGGTATTTTAACTTACGCAGATTTAGATAGCGAAGATGAAAATAATGGAGGGGATCATTCAACTGCAGGCGCTCAATGGATTTATGGTCGTTTAAGAAAATTGGGCGCAGCTAAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1563910-1565142 **** Predicted by CRISPRDetect 2.4 *** >NC_020515.1 Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1563910 32 100.0 36 ................................ AAAATTGCGTGGACGGACAATCCGGCGTGGATTTTG 1563978 32 100.0 35 ................................ TAAAATTATGTTACTACACTTGGTTGACGTAACAT 1564045 32 100.0 35 ................................ GCTTCTGAATATGATGCTCAAGAATGGCTAAATGC 1564112 32 100.0 35 ................................ ACAGTCATAACGTTGGTGCAGCACAAAGCCGTTAT 1564179 32 100.0 35 ................................ TTGCCAGTTTAAGTAATACCATTTCCACAGCAGCT 1564246 32 100.0 35 ................................ GTGTTTTACCAGGATTTCTTTTGCTAGTGTCTCAG 1564313 32 100.0 34 ................................ TTTCGCACGTTGTGGCGATAAAGCAGGAAATAAA 1564379 32 100.0 34 ................................ TAGTTCTTTACTTTAATGAACTAAAAGTACATAA 1564445 32 100.0 35 ................................ GTACGTAGCTGGATACAAAAGGCGCAACCGTTAGA 1564512 32 100.0 33 ................................ TTTTATGTACACTAAACGTATAATGAAGTCAAT 1564577 32 100.0 35 ................................ TAAATAACGGAGCAAATCATCAAGACAACTATCAA 1564644 32 100.0 35 ................................ AAAATGACGTGGTCGGAGCAATGCCGAAAAGCCAA 1564711 32 100.0 34 ................................ ATCTATTGAAGGCTGATAATATGCTTGACTCTGA 1564777 32 100.0 35 ................................ AATTAAGTACCGTACGTTGATGACGGAACTTGAAG 1564844 32 100.0 35 ................................ GCTATGGGGGATTCGTCAATTTCAATTTTATGGTG 1564911 32 100.0 34 ................................ CATTGCAACCTGCCATTCACTACGAAATCTACAT 1564977 32 100.0 34 ................................ CGATAAGCCGGTCAAATTACCGAAATGCTCCAAT 1565043 32 96.9 36 ..........C..................... CTTGCGAGTGTTGATACGGTCAATTAGCGAGAAGTT 1565111 32 93.8 0 ..........G..A.................. | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.5 35 GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC # Left flank : TCAACGATGATGATGCTGATTACTTACGATATTTCTTTTGATGATGCCGAAGGGCAGAAACGCCTACGCCGTATCGCCAAACATTGCCTCGACTATGGTATTCGCGCTCAATATTCGGTTTTTGAATGCGATGTCACACCCGATCAATGGGTTAAACTCAAACAAAAACTCCTCGATACTTACAATCCTGAAACAGACAGCTTACGCTTTTACCATCTCGGTAGCAAATGGCGTAATAAAGTGGAACACCACGGCACCAAGAAAGCGGTAGATATTTTTAAAGATACATTGATTTTGTAATATTGGGAACATCGCTAACGTCTGGTTCTCATCAAAATACGAGGAGGTTAGCGATTTTAATTTGTCCTTTAATAATCAATCAGTTAGAAATTTCTCCGAGTACTGCACATCTTATGTTACACTTAAATCACTCCTTTTATTTCAAGTTAGCGAATCACAGAGCGTTAAGCCTTGTGGCGCAATGCGTTGAAATATAGGGA # Right flank : CATCTTGAAGTATATCTGGATAGCGTCTCCAGCCTTGCATCCTCCACCACGAGGTTGTCGCTTGAAATATTGCATAAGAAAACACAAAACAATCTATATTTTCTGCTGAAGTAGCTAAATATCCGTTATAATGTCGCCATTTTTCATCTTATCTTAGAGTAAAAAATTATGATGATGCACTACTCCTCTCAATTTAACCATGCAAAAGTATTAGTGCTTGGTGATGTGATGCTAGATCGTTATTGGTTTGGATCCACAAATCGAATTTCCCCTGAGGCACCGGTTCCTGTTGTCAAAGTGCAGGAAAATGAAGAACGTGCAGGTGGTGCGGCGAATGTCGCGATGAATATTGCTGCGCTTAATGTGCCTGTCACCTTACATGGCTTAGTTGGGCAAGATGATGCAGGTTCAGCATTAGATAAATTATTAAACTCTCACCAAATTCAAAACCACTGCGTAGCATTGGATAGCCATCCAACTATCACTAAATTACGCATTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //