Array 1 3014931-3013210 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 13311 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3014930 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3014869 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3014808 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3014747 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3014686 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3014625 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3014563 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3014502 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3014441 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3014380 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3014319 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3014258 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3014197 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3014136 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3014075 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3014014 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3013953 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3013891 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3013788 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3013727 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3013666 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3013605 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3013544 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3013483 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3013422 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3013361 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3013300 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3013239 29 96.6 0 A............................ | A [3013212] ========== ====== ====== ====== ============================= ========================================================================== ================== 28 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3032861-3031063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 13311 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3032860 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3032799 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3032738 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3032677 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3032616 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3032555 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3032494 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3032433 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3032372 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3032311 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3032250 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3032189 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3032128 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3032067 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3032006 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3031945 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3031884 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3031823 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3031762 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3031701 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3031640 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3031578 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3031517 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3031456 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3031395 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3031334 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3031273 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3031212 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3031151 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3031090 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //