Array 1 29455-26748 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483445.1 Moraxella catarrhalis strain NCTC11020 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29454 28 100.0 32 ............................ AATCACTGCGTACGCCGATTGGCAAGATTGGC 29394 28 100.0 32 ............................ AGTAATTTGGGTAATCTTTGATAACCCAAGTT 29334 28 100.0 32 ............................ ATCCGCCATCAATGAGCCAAAGAAAATCAACA 29274 28 100.0 32 ............................ GTAAAAAGTCGGTCAATGCAACGCCTGCCCCT 29214 28 100.0 32 ............................ GATAAGATATCAAGCACTTTATCAGCGTCTGC 29154 28 100.0 32 ............................ ACAGGGGATTTGTCCCAAAAATACAACCAAAT 29094 28 100.0 10 ............................ CTGGCGTTTT Deletion [29057] 29056 28 100.0 32 ............................ AGTGATGCTATCCCATGCGACAGATATAGGCA 28996 28 100.0 32 ............................ ATGGTGATAACCTCACTTTTTTCAATGAGTTC 28936 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 28876 28 100.0 32 ............................ TTACCTGATGATACCATTTCCAATTTAACTTC 28816 28 100.0 32 ............................ CTGCCACCTCACACAGTGGCAGAGTTTACCCA 28756 28 100.0 32 ............................ TTTAACTCAAGATACGGCAAACAATTAATACC 28696 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 28636 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 28576 28 100.0 32 ............................ AGCTTTTTAAAATACTGCTTGATGGATTCATC 28516 28 100.0 32 ............................ TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 28456 28 100.0 32 ............................ AGCTTTTTAAAATACTGCTTGATGGATTCATC 28396 28 100.0 32 ............................ TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 28336 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 28276 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 28216 28 100.0 32 ............................ AGTTCCTTGCCGACCAACCCCATAAAATGGGT 28156 28 100.0 32 ............................ ATATCCAGCGCCATTACCAGCCACCCACTGCA 28096 28 100.0 32 ............................ ATGATTGAAAATGGGGCTTTATTTTAGGAGAT 28036 28 100.0 32 ............................ AGTATAAGTATTCTATGCTGTACCCAGTGCCA 27976 28 100.0 32 ............................ TAGCAAATCAGCTTAATCTTTTTATTAAAGAC 27916 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 27856 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 27796 28 100.0 32 ............................ TTCGTAGGTGTAACTATCACAAAGGTGAACTT 27736 28 100.0 32 ............................ TCATATTCAGCATTATAATTGACATGGCTGTT 27676 28 100.0 32 ............................ CTTGATAATTTCTAATTGCGCGGCGCGTATAT 27616 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 27555 28 100.0 32 ............................ AATATCAATATCATGTACAGTTTTCATTAAAT 27495 28 100.0 32 ............................ TAGGCAATGAGCCTGAAGTCAAAACATTCACC 27435 28 100.0 32 ............................ CACACACGCACATCATTTCAATAGATTTTATT 27375 28 100.0 32 ............................ AATCATACTTGAGCAATACGAAAACAAGAAAA 27315 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 27255 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 27195 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 27135 28 100.0 32 ............................ AAAAAACCGTTGTGGATAAAATCGCTCCTCTA 27075 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 27015 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 26955 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 26895 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 26835 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 26775 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 46 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAACAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //