Array 1 138311-133240 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDU01000039.1 Bifidobacterium longum strain APC1482 contig0039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 138310 36 100.0 37 .................................... GTGTACAGTCTCGGAGAACTCGCCTATTGCGGCTGGT 138237 36 100.0 35 .................................... ACAACGGCATGACGTTAATGCGGATGACGCTTACA 138166 36 100.0 35 .................................... TCCTCCAACACCTGCGTGGTCACGTTGAGTTCGTC 138095 36 100.0 37 .................................... GCCCCTTTCCGGCATGTGAAGTCAATGGAGGGCGTCC 138022 36 100.0 35 .................................... GGCTTGGGCTCGGTGGGGGTTATCGACATTTCGAA 137951 36 100.0 37 .................................... GCGCATGGCGCTGGGCTACTACAACACCGATCAGAAG 137878 36 100.0 35 .................................... GGCTGGCCGAAGCTCATACACGGCGTGAACGTGTT 137807 36 100.0 35 .................................... GCTGGAAAGTCGGCGTCTTGGCCGTCGTACCGGTA 137736 36 100.0 36 .................................... GCGGCCATGTCATGCTGCCTCAGAAGAGCGCTCGCC 137664 36 100.0 35 .................................... TGGCAAATGCAAGAGTGTTACGTGCGAGGTGATTT 137593 36 100.0 36 .................................... AGTTACCATGATGGCGAACTCACGCAGACGGCAGTC 137521 36 100.0 35 .................................... GCGATCGCATGACCGAATCGATAATCAGCGCACTC 137450 36 100.0 36 .................................... ACCAAGGGTCAGGCTGACGCGACGTTTGCCAAGCAG 137378 36 100.0 36 .................................... TCGTACCGTGGCGTGGACTACGGCGCCGACCGCATC 137306 36 100.0 36 .................................... GTTTCAATGTTCTGGCCCGACTGGTGGAACGTAAGC 137234 36 100.0 37 .................................... GATGGTCGAGCATGGTGAGGCGGATGACAGCGGTTGC 137161 36 100.0 36 .................................... TGGAGATCGTGGATTGTGGGTAGCTCAGTACGCGAA 137089 36 100.0 35 .................................... AAAAGAGACCTCAGCATGAGGCGTGCGATGATTCT 137018 36 100.0 37 .................................... GACGGCTTCAGCATCGGCTTCAGGCCGGTGGAAAACA 136945 36 100.0 37 .................................... CTTCGTCAGATCGCTCGACTGGTCCGGGCGAGGATTC 136872 36 100.0 35 .................................... CAGTGGACGACCACGCGGGCCGCCAAATCACCCTT 136801 36 100.0 35 .................................... GGGCCTTCAACTTGTCGACCTCCTCCTGACGGGAC 136730 36 100.0 36 .................................... GCAGTTCGAGTTTCCGGCACGTGACAGGCAGTGTGA 136658 36 100.0 37 .................................... TCGAGCAGGTAGGGGCTGAGCTTGTCTCGGTGGTCTC 136585 36 100.0 35 .................................... GCGGCCAACGACTCCTCTTCCTCCCGGCGGAGCAG 136514 36 100.0 35 .................................... ACGAAATGGCGTGTCGACGAATATTCTGAATGCTG 136443 36 100.0 36 .................................... CAGCAGACGACCGCCGACCTGAGCGCGTTGAAGCAG 136371 36 100.0 37 .................................... CTATGGGGCGCTACTGGTGTCGGAAAAACCCGACATG 136298 36 100.0 36 .................................... CGGACATACAGGGGTTCAGGCGTCACCCAAGCCGCG 136226 36 100.0 36 .................................... AATATGATTCCCGTAGACCCGGTGACACGACGACCA 136154 36 100.0 35 .................................... ATTCAGGGCGTTGCCGCATTCGTCCGCGAAGTCGA 136083 36 100.0 37 .................................... GGAGTCCCGACCGTATGGTTGCAATTGGACTGAGATG 136010 36 100.0 36 .................................... TCCTCCATTCGGTCCATCTCGTCTTGCAGCAGTCTT 135938 36 100.0 38 .................................... GTTGATGATCTTCTGGTTCGCTCCGTCGCGCCCGCCAA 135864 36 100.0 36 .................................... ATGCTGGAAGGTAACGGCGTAGGGCATGGCAGAATC 135792 36 100.0 36 .................................... TGGGTGCCCTTGCGCCAACACTGTCTTTCGCGCAGC 135720 36 100.0 36 .................................... GACTACAGCAACGCAGAGACCGCCGAACTGAACACC 135648 36 100.0 35 .................................... GTTGGGAAAACCCACACGTTCGTCCCCGTTGGATA 135577 36 100.0 34 .................................... GCACAAAAAGCTGCCCCCTGCTCAGTGGCGGGAT 135507 36 100.0 37 .................................... CCGGACGTACTGGTGTTCTTCAATGAGACGGCGAGCG 135434 36 100.0 36 .................................... AAGCCCCACGGACGTGCCCCGCCATACTCAGGAGAA 135362 36 100.0 40 .................................... CCGCTCCGGCGGCCAGAGTGTTCGTGGCCCATGAATGGCG 135286 36 100.0 38 .................................... GCCACAACATAGGGACAACCATAATGCGCGCGTTCGGG 135212 36 100.0 36 .................................... TCGGGAGAACCGTCATACACGGCCCAACTCGGCATA 135140 36 100.0 35 .................................... TCGACCTTGGTCTGGGAATTGGGCACTTCGACGTA 135069 36 100.0 35 .................................... TCGTCGGCGGTGGTCCAGATGCCCATCAGCGAGAA 134998 36 100.0 35 .................................... GAACGCGACTATCCCGCGACTCATTCCGAGGCCGG 134927 36 100.0 36 .................................... AACATTGGGCACCGACCCGGGTGTTCTGGTTACGGA 134855 36 100.0 36 .................................... ATAATAGTAGGGCCATACACCTTATTAGTGCATGAC 134783 36 100.0 35 .................................... TGTTGCGAGGGGCCGTGGGCCTTGACCTTGGTGAC 134712 36 100.0 37 .................................... AAGCCACATCAGCCGAGAACAATGCGTATCCTTCTTC 134639 36 100.0 35 .................................... ACGTAGATGCCTTGGCCGGGTTGGAGGTATGTGTA 134568 36 100.0 38 .................................... CCGCCAGCAGCGTGCACTGTTACGAGGCTTCTACGGTC 134494 36 97.2 37 ................T................... GCGTTCCAACGGTCCATGCTGCCGTTGCCGTGCGGCG 134421 36 100.0 35 .................................... ATGTTGTCGAATCCACGTTTCTTTCTCTTGCGGTT 134350 36 100.0 37 .................................... GTTACCGGAATTGTCAAGGCGATACTTGGGCAACGCA 134277 36 100.0 36 .................................... AACCAGTTCATCGACATCCTCGTAAATCGTATCGGC 134205 36 100.0 35 .................................... TACGGTCACCAGTACCAAGTCACAGGGTATGAGTG 134134 36 100.0 35 .................................... TCATCGACCACGTAGTCAAGTCAAAGGACAACCGG 134063 36 100.0 36 .................................... TAAGCGACCAGGACGCGAGGACCGCTAGCGAACGGT 133991 36 100.0 35 .................................... AACAGTTGCACCATGCAACAATATCCAAACTTGAG 133920 36 100.0 37 .................................... TCGGTAATCCAGCAGCCGGATATGCCGACGAATCGGC 133847 36 100.0 35 .................................... GCGAGTGCGATGTGCATGTTCCCGTCGTTGTCGAG 133776 36 100.0 36 .................................... GGCGCGCGTCTGCACATGATTGTCGTCCCGCCCGGC 133704 36 100.0 35 .................................... CGCAACATCGGTCATACTTGGTTCTGTGTCCATCA 133633 36 100.0 37 .................................... CTCAATATCTGGACTCAGATATACGGCGCGCTGGGTA 133560 36 100.0 35 .................................... GACATGCCGTTGTATCGCATCCCGTTGGACGGTAT 133489 36 100.0 35 .................................... CATGAGATAGGCGTATTGCGATACAAAAAAGCCAA 133418 36 100.0 35 .................................... TTGGTGGGGGCTAGCTCGTCGTGGCATATGCTGAC 133347 36 100.0 36 .................................... TGGTCACGGCGATTCTGGGAGTGGAAAATCTGCACC 133275 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================== ================== 71 36 99.9 36 CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Left flank : TGAAAATCCATACGGCTTATTTAAGGAATGTGATTTATTTTTTCGCGATATGCGATAGATGTTTGATAACTAAATAGTGGTACTAAGATAAGGGGGTGCGGATGTTTTTTTTGACGGTCAGGCGGCCAGTCCAAGGTGTTTGCGGTATTGCACGGGGCTTATCCAGTCCAGTGACTTCTTGATCCTAGTCTCATTGTAGTGGGTCAGGTAGGTGTATTGCTTCAATGTTTGTTGGGCGGGTTCGGCAGTGTTTTTCCGCCCCTTACGCTTACGAAATCAACGGCTCGACGACGAACTGACATCCACGAAAACAGCAATAGCGCCTATTGTTTTTGCGAGATCTGAATCGCTCCTGAATGAGCTACTAGGCATTCGCAATGAGAATATAGCGGTTCTGTGGATCTGAGAATCGAGATTGCTATGTTAGAGGACGTAGCCGTCCTCCACCTCTCGCAGTTTTGTCGGGAAAACCTCCAGTGATACTATAAATTCGAGCCTGC # Right flank : AGTGTGAGGCATGAAAGAAAACTCTTACACTCTGGCCTTGCATATGATGTGACCTGGTTTTTTGTTCCGCATCTCCTATCAAGTGAGAGGAAATGCGGAACAAAAACCAGGTCACATCAATATCGATACACTTCCGTGTGAAGCTCGTCATAGTGGATTGCACGAAAAACAGGTAGGGGGCTTTCCGCCATCAACAGCGGAAAGCCCCCTATTCTTACGGTCTATCTGCCCTAATTAGAGTACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTTTCCCACGGGAACTCAACGTCTGTGCGGCCGAAGTGGCCGTACGCGGCGGTATTCAAGTAGATCGGGCGCTTCAGGTCGAGTTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 24045-24389 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDU01000042.1 Bifidobacterium longum strain APC1482 contig0042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 24045 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 24111 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [24117] 24195 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 24255 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [24303] 24303 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 24360 27 81.5 0 C.............C.....C....CG | GC,C [24377,24381] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //