Array 1 2889170-2890468 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062983.1 Anaerolinea sp. 'rifampicinis' chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2889170 37 94.6 37 ............C..C..................... CCGTACCATGGCCTTCACGACCGCTGATGTTGTTAAG 2889244 37 94.6 37 ............C..A..................... CCGTACCATGGCCTTCACGACCGCTGATGTTGTTAAG 2889318 37 94.6 36 ............C..A..................... ATATTCCCATGAGCCGTGGCACCTGGAGGGGATCTC 2889391 37 100.0 39 ..................................... TGCCAGAGTGTAGAAGGTTTTCTCCTTAGGAGTCCCCTT 2889467 37 94.6 38 ............C..A..................... GCAATAGCCCAATTACGAATAATACAAAAGCGAACTTC 2889542 37 94.6 36 ............C..A..................... TTTTGGTGATCATGAAATTCTCCTTTCTGATCACTC 2889615 37 89.2 37 .......TA...A.....................G.. TGTAGTTCAGCCTCGTCCGTTGCGAATACTCCAAAGG 2889689 37 100.0 37 ..................................... TGATAGCCTCAAGAGAGCCATCAGAACAGCAAACAGT 2889763 37 100.0 37 ..................................... CAGAACCACAGCAACGCTGCTTACCTGTGCCACAGTC 2889837 37 91.9 38 ............A...G.T.................. CTGCGCCATTAATATGATCCGCAAAACCTATACGCAAA 2889912 37 97.3 37 ............A........................ CATTGGCTACCAGTAGGGAGTGCTTCAGTGCCAAGAT 2889986 37 97.3 36 ............A........................ GGTAGTCTTGGTAGGCCAGCCGCTCCGTTTTCTCGT 2890059 37 97.3 36 ............A........................ GGTAGTCTTGGTAGGCCAGCCGCTCCGTTTTCTCGT 2890132 37 97.3 38 ...............A..................... TGCCCAGCAGGGCACACATTACAACAATGAAGTTCTTC 2890207 37 94.6 38 ............C..A..................... ATTTATCTCGAAATCAGGACCTTCTACCGACTGCCAAC 2890282 37 97.3 35 ....................T................ AAGCTGGTGCCTTCACATCCGGCTGATTGCATAGG 2890354 37 100.0 39 ..................................... TAGAGCATCTTCAATAATGCTCTTACTCCGGTACATATT 2890430 37 100.0 0 ..................................... | GG [2890464] ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 96.4 37 CTCTAAGAGGTGGCTTACCCCGCAAGGGGATTGAAAC # Left flank : GCATTTTGCAAGATTGAAGATCATATCATCAGTGGGGATGCGTTCGCTGTTCTCGATACGTACCAGCGTCCGTGTTGAGACACCGATGAGATCCGCCAGGGTGCGTTGACTGATGCCGCGTTGATTTCGAGCTTCCTTGATAAGCCTTCCGATAGTCATTAATCCCTCCCGATGTTCCCCTTTGTGTATCTACTATGCCATGCATGGGGCCTTAACCTATAGGGGACAACCCCTATGATTTACACGAATAGGTTCGGGAATACGCCCTAATTTGCTCCCTTGAATTTGACACGGGGCCAAAAAAGGCGAAATCACTATGCTGAGGGGCGTTCCAACGAGAAGTGGGGGCTAAAAATGAGTCAAAATCGGACAAACCTTGGCGAAAATCTCACCGAATTTGGTTTTTAAAATGTAACGCCCGATAATGGACACAATGTCCAGCAAAATCGCTTGTTTTTCCTCAGAAAATGGGTATATTTAAAGGTGTGAGTCAAACAGCC # Right flank : CTAAAAAGCCACCCTCGTATGAAGGTGGCTTTTTCGTGTAACTATATAGATATAAGGTTTAGATTTTATAGCTGCACATTGAAGTATTCTTGTGCATCACGATCATATTGATAATGTTGGACTTTGTATTGTAAATCACGATAGTTAGCACCCAGAGCATACGTGATGCCTGCGACTGGACCTTGTACAAAGATATGTAGTTGTGGGTTTTCGTGACCCTTGTGGCATAATTTGATAGAATTTTGAATGGTGTTTACTGCATCTTTCCACTGATTTTCTTCTTCTGTCGGTCGATCAAGAATATAACTTAGGCTGTTTGTTTTGGTATGTTGGTTATAGGTGATTTTTGCAGGCCCTCTAACCAGTAACATTCTTAAGTGAGCTTTTGGATCTTCCTTTAAAAAGTGTTTTGCAATACGTACTGGAAAATCGTCTGATTCATATTGGCCTGAAAATTGCAGAGCTACTTGTATATTAAACTGGTAGTTCATTTTGTCGTC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTAAGAGGTGGCTTACCCCGCAAGGGGATTGAAAC # Alternate repeat : CTCTAAGAGGTGCCTAACCCCGCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 2 2893556-2894392 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062983.1 Anaerolinea sp. 'rifampicinis' chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2893556 37 91.9 36 ...........T..C......T............... TCTATCATCTGCATAATGGTAGCAAACGAGATATGA 2893629 37 94.6 35 ...........T..C...................... GTCATGATATGGCTGACGGGTATGGTGGTGCTCAT 2893701 37 94.6 35 ...........T..C...................... GGGTAAAACCGCGATGTGGTCTCTTTTACCCACAC 2893773 37 94.6 37 ...........T..C...................... ATACCATTACTCCTTGATAAGTCCGTTATCCCAATAT 2893847 37 94.6 36 ...........T..C...................... TTACCTGAAGGTGAAGGTTGAGATCCGCTATGAGGT 2893920 37 100.0 35 ..................................... CTGTGTGGTTTGGGGGCTGTTATCCTCCGTAGCTT C [2893937] 2893993 37 100.0 36 ..................................... TCACGTTGGCAGTACTGAGATAGCGCGGTCCTGTCC 2894066 37 100.0 34 ..................................... TGTCACCCATGCGCCCCTCATGGTGCCCTCGTTT 2894137 37 100.0 35 ..................................... ATACTGCCTATCGTGGCGATCATCTGATTGATATG 2894209 37 91.9 37 ...........TC...............A........ GCGATCGGGTTGCGCTGGTAGGCCGCGTGGGTATTCT 2894283 37 100.0 36 ..................................... AGGCGCAGGATGGCCGTGCCGTTGAACACATGGAGC 2894356 37 83.8 0 ...........AC.............A.......GCT | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 95.5 36 CCTGCAGAAGGCAATTTCCCCGCAAGGGGATTGAAAC # Left flank : CGACAGAAGCCTGGGACCTGTTTTTGCTGTATGGCGTCAGCGTGAGGGATTATCAGACGCGCCTGGTGCAGGTGCCGATGAAGCAAGCGATGATCCCGGCGTTTTGCGGGGATGTCAGCTATGGGGTAGAGCCTCCGACGCGGGCCTTAAAGCGTCTGGCGGAACAAGACGCGCTTGCGGCAGAAGTTGTGGCGCATTATGATGATTTATGTTGCTTGCTGAACCTGTTAACCGATTTTGGCTTTTATAGTGGCGTGGGCATCAAGACGGCGCAGGGTATGGGCATGATGCGCCGCTATCATGAAACAACATAAAAGAATCGACATCATGTGACGAAACTCCCCTGGGTTTTCGTGCAGGAAACGAGTTTCGTCAGGGAGCTTGTGCGATGGCTATTTTTGCGCTAAAGTTGAAAAAGTCGTATCTTAAAAACAGCCTTTTCCGGCAATTTGAGGCCTTAAAGGTCTTAAATGTGCTGTGTTCGTTGTTTTTCAGGCAGG # Right flank : TTTATTTCCGAGAACCGCACTCATTCAGGTGCGGTTTTTTGTTGCTGAGGTGGTCATTTTTGCCTGCTGAAATTTGACACGGGGCCGAAAACGACGAAATCACTATGCTGAGGCGAGCTTTAGGGAGAACTCGGGGCTAAAAATGAGTCAAAATCGCACAAACCTTGGTGAAAAGTTCACCGAATTTGGTTTTTAAAATGTAACGCCCGATAATGGACACAATGTCCAGCAAAATCGCTTGTTTTTCCAGAGGAAATGGGTATATTTAAAGGTGTGAGTCAAATAGTCCTCTAAGAGGTGACTTATCCCGCAAGGGGATTGAAACTAGGGATGAAGATATCGCCGATACCGCTGGGATCTAATACTCTAAGAGGTGACTTACCCCGCAAGGGGATTGAAACAGTGTGAGCACATGCGAGAATTCGCTTTCGGTGTAGCCTGCAGAAGGCAATTTCCCCGCAAGGGGATTGAAACACCGTACCATCTGTTGCGACGGTGTG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCAGAAGGCAATTTCCCCGCAAGGGGATTGAAAC # Alternate repeat : CCTGCAGAAGGTAACTTCCCCGCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 3 2894680-2895878 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062983.1 Anaerolinea sp. 'rifampicinis' chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2894680 37 73.0 38 .TCTA...G.TG.C..AT................... TAGGGATGAAGATATCGCCGATACCGCTGGGATCTAAT 2894755 37 78.4 36 A..CT.AG...TG.C...................... AGTGTGAGCACATGCGAGAATTCGCTTTCGGTGTAG A [2894772] 2894829 37 100.0 34 ..................................... ACCGTACCATCTGTTGCGACGGTGTGCGTCTCAC 2894900 37 94.6 36 ............T.........T.............. AGGTCTCCGGGTTCGACGTTAAGCGTGATGAGCTTC 2894973 37 91.9 34 ........G..AC........................ GGTAATTGCTAATTGCTAATTGCTAATTGCTAAT 2895044 37 94.6 37 ............TG....................... TCACAATCGTCAGTAAAGCCGGAACCACGCGTATGAC 2895118 37 97.3 34 ............T........................ GATGCAAAGTGGCGCACCTTCAACAAGCACGCAA 2895189 37 97.3 36 ............T........................ ATCATATACAGGGCTGTGCATTGGATAGTGCTGTAA 2895262 37 100.0 35 ..................................... CGGCACTTTACCGGTAAGAATAGCCACAATCGTGA 2895334 37 100.0 35 ..................................... ATCAATGCCAGAAATGTTGAGACAACTTGCGCTAA 2895406 37 97.3 34 ............T........................ GTCACATGATCTTCGTGAATAAAAGCCATTGCGG 2895477 37 97.3 36 ...........T......................... ATCAACAAAGAGCCAATTATATTGGGGGATGGATAA 2895550 37 97.3 35 ...........T......................... CGGTTGATGCTGCTCACGTGGTACGGCAGCACGTG 2895622 37 100.0 36 ..................................... ACGGTTGCGCCGTGACCTGATACCAGCGTTTTGCCA G [2895636] 2895696 37 75.7 34 G..CT.A....TCC.AA.................... GAACGACCAATTGCTTCAATGCTCGGGAAGCTCT G [2895708] 2895768 37 75.7 36 ...CT.AG...TCC.AA.................... ATAAACCAGTCGAAGAGGTCCGTCAAAAATGGCGAG G [2895780] 2895842 37 97.3 0 ............T........................ | ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 92.2 35 CCTGCAGAAGGCAATTTCCCCGCAAGGGGATTGAAAC # Left flank : CCTATCGTGGCGATCATCTGATTGATATGCCTGCAGAAGGTCATTTCCCCGCAAGGGAATTGAAACGCGATCGGGTTGCGCTGGTAGGCCGCGTGGGTATTCTCCTGCAGAAGGCAATTTCCCCGCAAGGGGATTGAAACAGGCGCAGGATGGCCGTGCCGTTGAACACATGGAGCCCTGCAGAAGGACATTTCCCCGCAAGAGGATTGAGCTTTATTTCCGAGAACCGCACTCATTCAGGTGCGGTTTTTTGTTGCTGAGGTGGTCATTTTTGCCTGCTGAAATTTGACACGGGGCCGAAAACGACGAAATCACTATGCTGAGGCGAGCTTTAGGGAGAACTCGGGGCTAAAAATGAGTCAAAATCGCACAAACCTTGGTGAAAAGTTCACCGAATTTGGTTTTTAAAATGTAACGCCCGATAATGGACACAATGTCCAGCAAAATCGCTTGTTTTTCCAGAGGAAATGGGTATATTTAAAGGTGTGAGTCAAATAGTC # Right flank : CACCAGATGATGGGCTATTTCTGGCGCGTGTGTCCCCACCGAAAGACTATTTTCATCAGTAAAGTTAGCAACTTCAATTCAGGTACCTCAGCCAGTTCAGAGATAATACGAGGATAGGAAAACAAAAAACCGACAGAAAATATTCTGCCGGTTTTTGTAAAACCCAGTTTTCGAAATGGGTCTTATACTGCGGGGAGGACAGGATTCGAACCTGCGGCCGGAGGATAAGTCCGGCAACCGCTTAGCAGGCGGCCCCAATCGTCCACTCTGGCACCTCCCCATGAGGTAAAACGATGTAGTTATAAAGGAATGTAGCGGAGAGGACAGGATTCGAACCTGCGGTACCCTTGCGGGCACGACGGTTTTCAAGACCGTTGCCTTCAACCACTCGGCCACCTCTCCAAGCCGAGGTCGGCTAGCGAGAAGAATCCTAACATACAGGCGAATAAGCGTCAATGCTGAGGTGTTGATATTGCCTTGAAAGTTGCTCTAAAAGAGCG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCAGAAGGCAATTTCCCCGCAAGGGGATTGAAAC # Alternate repeat : CCTGCAGAAGGCTATTTCCCCGCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : NA // Array 4 3362884-3362474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062983.1 Anaerolinea sp. 'rifampicinis' chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 3362883 38 100.0 36 ...................................... CTTCATGATGTTACTCCTGAATAGGATTGGATATTT 3362809 38 100.0 36 ...................................... ATTCCCTTCGGAATCCTGAGACACTGCGAGAACGAT 3362735 38 100.0 35 ...................................... CAGACTGGTCATCCCTACTTGAAAACATAGTAGGG 3362662 38 100.0 36 ...................................... TACGGTCCGCGTTGGGATGTCCGTTACCTTAAGTTC 3362588 38 97.4 37 .....................................A AATTTCTCATCTGACCGCCGTCCTCAAATACCATCGG 3362513 38 89.5 0 ..........T.....A...............T...T. | CT [3362478] ========== ====== ====== ====== ====================================== ===================================== ================== 6 38 97.8 36 CCTTAGGCTGCGCCTATCCCCTACGGGGGACTGAAACT # Left flank : AAAGGTGGACGTTACATGCTTGATAATGACGATCCAGCAATGTGGGAATCAGCGCGGCAGTTTGTAATTAAGTCGATTCAAAGTGTAGGAGCTTCGGCAAATACCACACTCCACTTTTTCGCGCAGACGCCTGCAACATTGATGGGTGGCATCACCATACCGTTTTATCGCTTCTGGCACGTGAAGATATATAATTTTGGTGGCAGCGATTACGCTGAAGTGCTCGACATACCAAGATCGTAACTGCTCAAATACGCCTAAAAATTGACTGTTTTAGGTTAGAATTTTTGTCTCCCGTCCGCAAACGGCGCTGAGTGGCGCTCAGCAGAGCATCAACGAGAAGTGGGTCTCAAACGAGGCCCTCTTTTTGTTTTCTAGAAGCATCAATTACCACCGATTTTGGTTTCAAAATTGTAAGGCCTGCGAAGCGAACAAGTTGATGCGATTTTGTTGCGTCTGAGCGCGATTTTGGTATGATAGAGAGAGGTAGACAAACAGCC # Right flank : ACTAGTGAAAGATTTGACATAAGTGGAGACAGTCGGAATTATTGCCGATCTTATCGGCATTGCCGGAGCAGTGTTCGCGTTTTTTGCCTGGATACAAGCACGTCAAACACAACAAGAGCTAATCAAGGAACGGAAGCGATTAGCGAAGAAAGTCATTGTCAAATTGAATTATGGTGGGCAAGAGTTGAACTTACCTGTTGAACTTCGCCGTGCCGAGTTAAGCCGCGCTGAAATATTAGGTCGAATCGGCATGTTGCCTATGCGTGAGCCAGGAAAACGTTTTTCATTGGAGTTCACCAGCACTCCAGATTTTCTTCAGCGTCTCAATCAGGTTATAGATAGCACTAGTGAAGAAACTTTAATCATTCCATGTAGTAAAGAAGAGTTTGAGCAGTTCAAGCAATGAAATGCCGCCTATCAAAGCGGCATTTCTACTCTAGGTTGCTGTCAGGCCAAAGCGTTCGAGGATGTTGTTATCAACTGTATTCGCGTCGCGGCCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAGGCTGCGCCTATCCCCTACGGGGGACTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.90,-11.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 3365186-3364184 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062983.1 Anaerolinea sp. 'rifampicinis' chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3365185 37 100.0 36 ..................................... GAAGAAGCACCGCCTGAAACTGAACTGTCATTATCA 3365112 37 100.0 37 ..................................... GTAACGCTGCTGGAATACCGCCACAACTTCTCTATCA 3365038 37 100.0 38 ..................................... AAATTCATATGTACCTTCGCTGGTTCTGTATTCCATGA 3364963 37 100.0 37 ..................................... CCCATCCATCCGGAAGATGTTGGATATCCAAGAAATA 3364889 37 100.0 37 ..................................... TATATGTCTTCATCAACCAGGATGAAGCCACCGTTGC 3364815 37 100.0 38 ..................................... TCAATCCAACCAGAACGACCAACAAAAATCCATTACGC 3364740 37 100.0 38 ..................................... CAATGCTGGCATGTACCAATCCATCCTGTAGGGTCGCC 3364665 37 100.0 39 ..................................... GTGAATCCCAATGTCCCACTTTGATAGTCTAGAACCACT 3364589 37 100.0 38 ..................................... GAAATAGAGTTCCTTGGGGAGCCAACGAAACGCACGCT 3364514 37 100.0 35 ..................................... CTGATACTGGTTTTGAGAGAAGTCATAAAATCCAA 3364442 37 100.0 38 ..................................... CCATCTTGGGCCGAAACGCCCATTACGCTAATTACGAG 3364367 37 100.0 36 ..................................... TCGAGGGTGTAATCTTAACCTCATCTTCTGCTCGGA 3364294 37 100.0 37 ..................................... TTGAAAATGAATTTGGATTCGATAGTTCGCACACTTC 3364220 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 100.0 37 CCTTAGGCTGCGCCTAACCCCTACGGGGGACTGAAAC # Left flank : GTGACCCATGCTATGGATCGTGAGTTATGACATTCCAAATGATAAACGCCGCCGAAAAGTGGCCAAAGTGATGGAAGGATTCGGGCGCAGGGCACAATACAGCGTGTTTGAGTGCGATCTGACGTTGGCGAAAATGGCTCAACTGACCAAAAGCCTGAAGCGACTCATCAATAATGAGGAAGATGATGTACGTTTTTACCCGCTCAATAAGGCCGATGTTCAGCGCGTTCGACTGCTAGGGAAAGCACAATTAAACCGTGCAAAAGGATGGTATATGGTTTGAATTTTTGTCTCCCGTCCGCAAATGGCGCTGAGCGGCGCTCAGTAGCGCATCAACGAGAAGTGGGTCTCAAACGAGGCCCGCTTTTTGTTTTCTAGAAGCATCAATTACCACCGATTTTGGTTTCAAAATTGTAAGGCCCGCGAAGCAAACAAGTTGATGCGATTTTGTTGCGTCTGAGCGCGATTTTGGTATGATAGAGAAAGGTAGACAAACAGCC # Right flank : ATCTCAACCATGTTTGTTACTCCTACACTTATTTAAAACCTTAGGATGTGCCAACCTACTGGGGACTGCTTCTGCTATGGTTTCGAGTGGAGGCTTTTTGATTTTTCGGTTACGATTGGCAGAATAAGCTATTCTAGGAGCTGCTCCATATGACCCAGATGTTCATCAGTTATAGTCGCAAGGATAGCACCTGCGTAAACCAGGTCGTCGATGAATTGAATAAAAGCGATTTTGAAACGTGGTTTGATAAAGCATCGCTAGAGATCACACAAGATTGGCTTGATCGCATCGAATCAGCGATCAAGGCTTCTGGCGTGTTCGTTTTGTTCTGGTCAAAAAACGCCAGTGAATCCGATTATGTGAAACATGAGCTGAGTTTTGCTAGACTTCAATCTATAAGTGGCAAACTTAAAGTGCTTGCGATCATGCTGGATGACATGCCGCTGCCGATGCCTCATTTACAGGCCTATGACATGAAGCATGGCTGTACTAACTCGAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAGGCTGCGCCTAACCCCTACGGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 6 3374208-3372841 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062983.1 Anaerolinea sp. 'rifampicinis' chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3374207 37 100.0 36 ..................................... GATCTACACAGAAAACATGTCCTGTGGTGCTATTGG 3374134 37 100.0 38 ..................................... TTAACCCAACCGCTTTCAGCCATTTCTATCTCAAGGGT 3374059 37 100.0 36 ..................................... ACAAAGCGTCTGAATATTTAAAAACACGGGAAGAAC 3373986 37 100.0 39 ..................................... AAGTACTGGAGTTGGCTGCTAAAACACCCTAGAGATGGC 3373910 37 100.0 36 ..................................... CAACACAATCGAACCATTCTCACAGCCTAAAATCGG 3373837 37 100.0 36 ..................................... TTGTGAAAGCGGATCCACAATTATCTTCTTCGAATA 3373764 37 100.0 38 ..................................... ACGAATGTCTTCAGCCCATACGTAGTACCAATCATTGC 3373689 37 100.0 37 ..................................... AAGCTCCCTCCTTCGTGATAGTGGACAAAATCTTCCA 3373615 37 100.0 36 ..................................... AAGCTCTGGACTGTACGAGCAAGCATCTTCTAAACC 3373542 37 100.0 37 ..................................... ATACGAGCCATCGCTGAACGTGACACGACTTCCGTTG 3373468 37 100.0 37 ..................................... GGACGGCGAGCGAATACAATTTCGTCTTGATCGGTAG 3373394 37 100.0 37 ..................................... ATGGCGCCGTTACCGTCGACGACACCATACACCCTGT 3373320 37 100.0 36 ..................................... ATGATTGTTGCACCGCCAGAAGCGAACAACATAGCA 3373247 37 100.0 37 ..................................... CAACTTCTGCTCGGCCTGAGCACTGTGGTTCTTTACC 3373173 37 100.0 39 ..................................... CCGTAGTTCCATGAGCAGGGTCGATCAGAGGATTGGACA 3373097 37 100.0 38 ..................................... GTCACCCGTAGGCAAGTGTTCGACCAGTTTAGATCTCC 3373022 37 100.0 35 ..................................... ACTGCACCAGTCGGTAGTCCGTCAGGCAGCTCTTC 3372950 37 100.0 36 ..................................... ACACTCAAGAGTGCGAAAAACAACAGATATTCCAAC 3372877 37 86.5 0 ................................TCTTG | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 99.3 37 CTTGAGGCTCTGCCTTACCCCTACGGGGGACTGAAAC # Left flank : GAGCCATTTCGGAACACGGTTGGTCTTCCTCGGGCGAAGGTGCAGTGTCACTGATGTCAGGTCGTTCTGGAAGTAACTCATATGCTTCCTAAATGTGATCAACTCAAACGAATATACTGATCACACTGTAATATGTCCCTTTTTACAAAGTTGGGGGGCACCCCCTACAGATAAGTATGAATTATCACTACTAACTTCAGATAAGCATATAACCAATTACAGATAATTGCAAAAACCATTTGCCTAAATTGTATCAGTCACAAAAGAGCAAGTTTTGGTTAGAATTTTTGTCTCCCGTCCGCAAATGGCGCTCAGAGGTGCTGAGCGGCGATAGGACGAAATACGTACCTGGAAATATGGAAGTGGGTGAGAGGTATCATACGTAAAATCTCACCGAATTTGGTTTTAAAATTGTAAGGCCCGCGAGGCGATCAAATTGATGCGATTTTGTTGCGTCTGAGCGCGATTTTGGTATGATAGAGAGAGGTAGACAAAAAGCC # Right flank : CTTTGTGAGGGTTGCTAGCTGGCTTGAACCTGTATTTTAGTTTGAGGCATGTTATGGACCTGTAAAATGCGATCCATGCGGAAGGTGCGTGTGGCGTGTTCGAGGTGGCACCACGCTTCGATATAGGTGGCGCCATTATTGCTGTAAATCATGGTCGGTTCGATGCGGCGGATTGTGGTTTCGCCGCGATATGGGCTGTGATATGTGATTTCCACTGAGGTTTGCTGGTCGTAAGCAGCGTGAATCGCTAATTGAATTGACTGACTGTTGTTTTGTGTCACATAGCCCCTGCGATCAAAACCAGCGATCCGCTCGCGGACGTTGTCAATCACGGCATCGACCTGCGTTTGCAATCCATGCAGCGTGGTTGGATCGATGTCGTCGGCTAACCAGTCGAGTAAAGCACCAGGCATCGCAATAGGCAGCTCACTGAAGGTACTCATTCGTTGATAGACACGCGCAGCCAGCCACAGATACTCACGCATATCATTCGATAAATG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAGGCTCTGCCTTACCCCTACGGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //