Array 1 12556-8498 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWF01000043.1 Salmonella enterica subsp. enterica serovar Muenster strain BCW_2884 NODE_43_length_41041_cov_1.56937, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12555 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 12494 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 12433 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 12372 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 12311 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 12250 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 12189 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 12128 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 12067 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 12006 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 11945 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 11884 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 11822 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 11761 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 11700 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 11639 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 11578 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 11517 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 11456 29 96.6 32 ............................T CGCCCACCCTGAGTATTATCACTACTCCGGAC 11395 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 11333 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 11272 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 11211 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 11150 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 11089 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 11028 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 10967 29 100.0 32 ............................. TATTTCACTGACTGACTACGGCGGATCGAGTA 10906 29 100.0 32 ............................. TCAGGAAACAGCGCAATATTGATTTACTCGCA 10845 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCGGAGATGGTG 10784 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 10723 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 10662 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 10601 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 10540 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 10478 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 10417 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 10356 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 10295 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 10234 29 100.0 32 ............................. CTGTTTTGTCTCACGCTGGCGACCTCCCTGGT 10173 29 100.0 32 ............................. GCGGGACCGGAGGCGCAAGTGGTGGCGCTTTA 10112 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 10051 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 9990 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 9929 29 100.0 32 ............................. GCGTTTGAATCCTCCTGGTGGCGTATGCAGGG 9868 29 96.6 32 ..........T.................. GCCCGAGACACCCGCGCGTTATTTTTGAACCT 9807 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 9746 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 9685 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 9624 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 9563 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 9502 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 9441 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 9380 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 9318 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 9257 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 9196 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 9135 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 9074 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 9013 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 8952 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 8891 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 8830 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 8769 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 8708 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 8647 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 8586 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 8525 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 67 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29810-29111 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWF01000043.1 Salmonella enterica subsp. enterica serovar Muenster strain BCW_2884 NODE_43_length_41041_cov_1.56937, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29809 29 100.0 32 ............................. CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC 29748 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 29687 29 96.6 32 ............T................ CCGAAATACGATGCCGGAATATCGTAAACGGA 29626 29 100.0 32 ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 29565 29 100.0 32 ............................. GATTTACTAAGGTCAACAAGGGATTGAATTGG 29504 29 100.0 32 ............................. CTCATGCGCAGCACTGGATCGAGAGCGAAGGG 29443 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 29382 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 29321 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 29260 29 96.6 32 ......G...................... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT 29199 29 93.1 32 .....A......T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 29138 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //